Wall clock time and date at job start Tue Mar 31 2020 11:43:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35746 * 116.99936 * 2 1 4 4 C 1.39213 * 120.81535 * 359.97303 * 3 2 1 5 5 C 1.38312 * 119.28418 * 180.02562 * 4 3 2 6 6 N 1.31613 * 120.97663 * 359.73528 * 5 4 3 7 7 C 1.32794 * 121.77594 * 0.53431 * 6 5 4 8 8 C 1.48186 * 119.69628 * 179.74421 * 7 6 5 9 9 O 1.21517 * 119.99765 * 188.37372 * 8 7 6 10 10 N 1.34774 * 119.99952 * 8.37966 * 8 7 6 11 11 C 1.47158 * 120.70951 * 8.01273 * 10 8 7 12 12 C 1.53889 * 108.03118 * 132.75628 * 11 10 8 13 13 H 1.09002 * 112.09707 * 181.90943 * 12 11 10 14 14 C 1.54552 * 107.82959 * 306.50091 * 12 11 10 15 15 C 1.54284 * 104.84474 * 89.07021 * 14 12 11 16 16 C 1.54544 * 104.85084 * 359.97438 * 15 14 12 17 17 H 1.09000 * 112.17838 * 146.40702 * 16 15 14 18 18 C 1.48429 * 120.83250 * 188.39344 * 10 8 7 19 19 N 1.48311 * 107.21025 * 58.36017 * 12 11 10 20 20 C 1.36929 * 128.07839 * 106.67762 * 19 12 11 21 21 H 1.07998 * 119.99935 * 165.51414 * 20 19 12 22 22 C 1.38819 * 120.00016 * 345.51966 * 20 19 12 23 23 N 1.31614 * 120.00198 * 352.85357 * 22 20 19 24 24 Si 1.86799 * 119.99774 * 172.85067 * 22 20 19 25 25 H 1.48499 * 109.47332 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.46877 * 119.99980 * 24 22 20 27 27 H 1.48496 * 109.47369 * 240.00135 * 24 22 20 28 28 C 1.39106 * 120.60873 * 359.47436 * 7 6 5 29 29 H 1.08999 * 109.47002 * 300.00944 * 1 2 3 30 30 H 1.09007 * 109.46829 * 60.00426 * 1 2 3 31 31 H 1.08997 * 109.47255 * 179.97438 * 1 2 3 32 32 H 1.07999 * 120.35473 * 0.04419 * 4 3 2 33 33 H 1.08004 * 119.51235 * 180.02562 * 5 4 3 34 34 H 1.08998 * 109.75059 * 13.12455 * 11 10 8 35 35 H 1.08999 * 109.75002 * 252.38846 * 11 10 8 36 36 H 1.09001 * 110.36324 * 207.90828 * 14 12 11 37 37 H 1.08998 * 110.36624 * 330.11863 * 14 12 11 38 38 H 1.08998 * 110.35859 * 241.15858 * 15 14 12 39 39 H 1.08996 * 110.36026 * 118.84346 * 15 14 12 40 40 H 1.09003 * 110.57643 * 107.75726 * 18 10 8 41 41 H 1.08997 * 109.57012 * 346.60957 * 18 10 8 42 42 H 0.96994 * 120.00099 * 179.97438 * 23 22 20 43 43 H 1.07997 * 120.51234 * 180.27921 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0453 1.2095 0.0000 4 6 1.3038 2.3877 -0.0006 5 6 1.9644 3.6029 -0.0011 6 7 3.2793 3.6590 0.0042 7 6 4.0262 2.5611 -0.0004 8 6 5.5034 2.6780 0.0001 9 8 6.1913 1.6887 -0.1572 10 7 6.0840 3.8816 0.1752 11 6 5.2793 5.0582 0.5407 12 6 5.9866 5.7766 1.7033 13 1 5.4263 6.6447 2.0506 14 6 6.2313 4.7388 2.8221 15 6 7.6075 4.1225 2.4954 16 6 8.0689 4.8433 1.2086 17 1 9.1503 4.9763 1.1768 18 6 7.5474 4.0536 -0.0040 19 7 7.3460 6.1384 1.2335 20 6 7.8221 7.3781 0.8997 21 1 8.8851 7.5390 0.7980 22 6 6.9382 8.4282 0.6920 23 7 5.6414 8.2037 0.6768 24 14 7.5894 10.1600 0.4342 25 1 9.0730 10.1452 0.4955 26 1 7.1544 10.6596 -0.8949 27 1 7.0584 11.0517 1.4962 28 6 3.4346 1.3020 0.0000 29 1 -0.3633 0.5140 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0276 -0.0005 32 1 0.2244 2.3532 -0.0003 33 1 1.3928 4.5192 -0.0011 34 1 4.2847 4.7412 0.8542 35 1 5.2001 5.7301 -0.3139 36 1 6.2567 5.2291 3.7953 37 1 5.4567 3.9722 2.8044 38 1 7.5105 3.0518 2.3159 39 1 8.3094 4.3097 3.3080 40 1 7.7590 4.6040 -0.9207 41 1 8.0281 3.0761 -0.0412 42 1 5.0238 8.9375 0.5320 43 1 4.0435 0.4101 0.0009 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001029416983.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:00 Heat of formation + Delta-G solvation = 28.694885 kcal Electronic energy + Delta-G solvation = -27568.494500 eV Core-core repulsion = 23809.278740 eV Total energy + Delta-G solvation = -3759.215760 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.93694 -39.71776 -38.36719 -37.45508 -33.68642 -32.45536 -31.63785 -31.43967 -30.26991 -29.15545 -27.92621 -26.33691 -24.38552 -23.71287 -23.28020 -22.99494 -20.34207 -19.55319 -18.87066 -18.07437 -17.41265 -16.51209 -16.14942 -16.05865 -15.55121 -15.34635 -15.12892 -14.74773 -14.40720 -14.08558 -13.92923 -13.65122 -13.18407 -13.02066 -12.85949 -12.65527 -12.48410 -11.89257 -11.72221 -11.60833 -11.55846 -11.39552 -10.98143 -10.87895 -10.72464 -10.31013 -10.03203 -9.88518 -9.68188 -9.57171 -9.45081 -9.28389 -9.09627 -8.98690 -8.42289 -7.93977 -6.73999 -5.77057 -3.12530 0.69103 1.23149 2.78937 3.04190 3.38138 3.44993 3.46448 3.58288 3.98060 4.33429 4.46154 4.48760 4.69589 4.79727 4.81736 5.05187 5.11913 5.14592 5.32409 5.39842 5.56636 5.72114 5.76948 5.81885 5.87979 5.90058 6.05751 6.17165 6.26056 6.36179 6.46273 6.52157 6.64381 6.73417 6.85108 6.91219 6.96885 7.01601 7.29011 7.46719 7.56549 7.74424 7.84556 8.16370 8.22895 8.65813 9.12752 9.74060 10.51850 11.34785 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.019818 B = 0.003956 C = 0.003531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.548241 B = 7076.204921 C = 7928.322193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.310 6.310 3 C 0.158 3.842 4 C -0.249 4.249 5 C 0.131 3.869 6 N -0.458 5.458 7 C 0.126 3.874 8 C 0.556 3.444 9 O -0.559 6.559 10 N -0.566 5.566 11 C 0.086 3.914 12 C 0.162 3.838 13 H 0.123 0.877 14 C -0.135 4.135 15 C -0.123 4.123 16 C 0.134 3.866 17 H 0.076 0.924 18 C 0.100 3.900 19 N -0.587 5.587 20 C -0.222 4.222 21 H 0.076 0.924 22 C -0.005 4.005 23 N -0.912 5.912 24 Si 0.911 3.089 25 H -0.281 1.281 26 H -0.291 1.291 27 H -0.291 1.291 28 C -0.149 4.149 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.103 0.897 32 H 0.140 0.860 33 H 0.166 0.834 34 H 0.116 0.884 35 H 0.077 0.923 36 H 0.051 0.949 37 H 0.046 0.954 38 H 0.055 0.945 39 H 0.053 0.947 40 H 0.067 0.933 41 H 0.075 0.925 42 H 0.253 0.747 43 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.080 -12.225 0.309 16.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.221 6.221 3 C 0.105 3.895 4 C -0.270 4.270 5 C -0.028 4.028 6 N -0.173 5.173 7 C -0.011 4.011 8 C 0.342 3.658 9 O -0.439 6.439 10 N -0.295 5.295 11 C -0.036 4.036 12 C 0.054 3.946 13 H 0.140 0.860 14 C -0.174 4.174 15 C -0.163 4.163 16 C 0.026 3.974 17 H 0.094 0.906 18 C -0.024 4.024 19 N -0.308 5.308 20 C -0.350 4.350 21 H 0.094 0.906 22 C -0.202 4.202 23 N -0.559 5.559 24 Si 0.742 3.258 25 H -0.206 1.206 26 H -0.219 1.219 27 H -0.218 1.218 28 C -0.171 4.171 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.121 0.879 32 H 0.158 0.842 33 H 0.183 0.817 34 H 0.132 0.868 35 H 0.095 0.905 36 H 0.070 0.930 37 H 0.065 0.935 38 H 0.073 0.927 39 H 0.072 0.928 40 H 0.086 0.914 41 H 0.093 0.907 42 H 0.063 0.937 43 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -10.241 -11.851 0.172 15.664 hybrid contribution -0.576 0.303 -0.267 0.703 sum -10.817 -11.549 -0.095 15.824 Atomic orbital electron populations 1.23138 0.77811 1.04310 1.01702 1.86082 1.21824 1.26204 1.88031 1.19188 0.92113 0.84693 0.93506 1.22366 1.01527 0.93265 1.09837 1.22857 0.90367 0.97195 0.92344 1.68214 1.06486 1.29689 1.12874 1.21217 0.94951 0.88384 0.96502 1.17812 0.85460 0.83835 0.78726 1.90713 1.63308 1.36805 1.53052 1.48477 1.08887 1.08635 1.63467 1.23488 0.95059 0.84720 1.00374 1.22097 0.87822 0.94867 0.89800 0.85952 1.22624 0.96078 0.98746 0.99979 1.22465 0.97313 0.98501 0.97977 1.21941 0.96186 0.87294 0.92024 0.90552 1.22665 0.79376 1.00146 1.00193 1.45229 1.08697 1.01057 1.75794 1.19058 0.91761 0.84157 1.40022 0.90630 1.24814 0.95508 0.98350 1.01481 1.69817 1.00469 1.30346 1.55247 0.86066 0.77934 0.84536 0.77297 1.20583 1.21852 1.21794 1.21351 0.91784 0.99709 1.04257 0.92267 0.92311 0.87908 0.84197 0.81688 0.86757 0.90459 0.93002 0.93477 0.92659 0.92779 0.91440 0.90676 0.93683 0.83000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.84 101.05 0.99 1.15 16 2 O -0.31 -3.39 10.51 -18.95 -0.20 -3.59 16 3 C 0.16 1.97 6.73 -38.85 -0.26 1.71 16 4 C -0.25 -2.64 9.12 -39.19 -0.36 -2.99 16 5 C 0.13 1.62 11.17 -17.62 -0.20 1.42 16 6 N -0.46 -7.42 6.15 -9.87 -0.06 -7.48 16 7 C 0.13 2.16 6.57 -83.04 -0.55 1.62 16 8 C 0.56 11.00 7.67 -12.17 -0.09 10.90 16 9 O -0.56 -11.89 15.85 5.35 0.08 -11.81 16 10 N -0.57 -11.55 2.26 -171.52 -0.39 -11.94 16 11 C 0.09 1.85 5.09 -3.22 -0.02 1.83 16 12 C 0.16 3.68 3.16 -65.65 -0.21 3.47 16 13 H 0.12 3.14 6.21 -51.93 -0.32 2.82 16 14 C -0.14 -2.69 6.18 -25.24 -0.16 -2.84 16 15 C -0.12 -2.36 6.19 -25.25 -0.16 -2.51 16 16 C 0.13 2.78 4.27 -65.68 -0.28 2.50 16 17 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 18 C 0.10 2.03 6.05 -2.55 -0.02 2.01 16 19 N -0.59 -14.23 2.81 -152.61 -0.43 -14.66 16 20 C -0.22 -5.88 10.38 -15.06 -0.16 -6.03 16 21 H 0.08 1.97 7.84 -52.49 -0.41 1.56 16 22 C 0.00 -0.13 5.44 -17.43 -0.09 -0.22 16 23 N -0.91 -24.82 10.42 55.49 0.58 -24.24 16 24 Si 0.91 21.33 29.56 -169.99 -5.02 16.30 16 25 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 26 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 27 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 28 C -0.15 -2.24 9.60 -38.89 -0.37 -2.61 16 29 H 0.06 0.31 7.71 -51.93 -0.40 -0.09 16 30 H 0.06 0.30 7.71 -51.93 -0.40 -0.10 16 31 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.14 1.00 6.45 -52.49 -0.34 0.66 16 33 H 0.17 1.58 8.06 -52.48 -0.42 1.16 16 34 H 0.12 2.29 4.44 -69.42 -0.31 1.98 16 35 H 0.08 1.92 7.95 -51.93 -0.41 1.50 16 36 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.05 0.90 7.84 -51.93 -0.41 0.49 16 38 H 0.05 1.03 7.86 -51.93 -0.41 0.63 16 39 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 41 H 0.07 1.45 7.11 -51.93 -0.37 1.08 16 42 H 0.25 6.73 8.31 -40.82 -0.34 6.39 16 43 H 0.15 2.27 7.66 -52.49 -0.40 1.87 16 LS Contribution 342.17 15.07 5.16 5.16 Total: -1.00 -30.72 342.17 -8.05 -38.77 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -5.85 Total: 4.09 kcal Atomic # 6 Polarization: 11.31 SS G_CDS: -1.92 Total: 9.40 kcal Atomic # 7 Polarization: -58.02 SS G_CDS: -0.30 Total: -58.32 kcal Atomic # 8 Polarization: -15.28 SS G_CDS: -0.11 Total: -15.39 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.72 -8.05 -38.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029416983.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.466 kcal (2) G-P(sol) polarization free energy of solvation -30.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.771 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds