Wall clock time and date at job start Tue Mar 31 2020 11:42:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35746 * 116.99936 * 2 1 4 4 C 1.39213 * 120.81535 * 359.97303 * 3 2 1 5 5 C 1.38312 * 119.28418 * 180.02562 * 4 3 2 6 6 N 1.31613 * 120.97663 * 359.73528 * 5 4 3 7 7 C 1.32794 * 121.77594 * 0.53431 * 6 5 4 8 8 C 1.48186 * 119.69628 * 179.74421 * 7 6 5 9 9 O 1.21517 * 119.99765 * 188.37372 * 8 7 6 10 10 N 1.34774 * 119.99952 * 8.37966 * 8 7 6 11 11 C 1.47158 * 120.70951 * 8.01273 * 10 8 7 12 12 C 1.53889 * 108.03118 * 132.75628 * 11 10 8 13 13 H 1.09002 * 112.09707 * 181.90943 * 12 11 10 14 14 C 1.54552 * 107.82959 * 306.50091 * 12 11 10 15 15 C 1.54284 * 104.84474 * 89.07021 * 14 12 11 16 16 C 1.54544 * 104.85084 * 359.97438 * 15 14 12 17 17 H 1.09000 * 112.17838 * 146.40702 * 16 15 14 18 18 C 1.48429 * 120.83250 * 188.39344 * 10 8 7 19 19 N 1.48311 * 107.21025 * 58.36017 * 12 11 10 20 20 C 1.36929 * 128.07839 * 106.67762 * 19 12 11 21 21 H 1.07998 * 119.99935 * 165.51414 * 20 19 12 22 22 C 1.38819 * 120.00016 * 345.51966 * 20 19 12 23 23 N 1.31614 * 120.00198 * 352.85357 * 22 20 19 24 24 Si 1.86799 * 119.99774 * 172.85067 * 22 20 19 25 25 H 1.48499 * 109.47332 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.46877 * 119.99980 * 24 22 20 27 27 H 1.48496 * 109.47369 * 240.00135 * 24 22 20 28 28 C 1.39106 * 120.60873 * 359.47436 * 7 6 5 29 29 H 1.08999 * 109.47002 * 300.00944 * 1 2 3 30 30 H 1.09007 * 109.46829 * 60.00426 * 1 2 3 31 31 H 1.08997 * 109.47255 * 179.97438 * 1 2 3 32 32 H 1.07999 * 120.35473 * 0.04419 * 4 3 2 33 33 H 1.08004 * 119.51235 * 180.02562 * 5 4 3 34 34 H 1.08998 * 109.75059 * 13.12455 * 11 10 8 35 35 H 1.08999 * 109.75002 * 252.38846 * 11 10 8 36 36 H 1.09001 * 110.36324 * 207.90828 * 14 12 11 37 37 H 1.08998 * 110.36624 * 330.11863 * 14 12 11 38 38 H 1.08998 * 110.35859 * 241.15858 * 15 14 12 39 39 H 1.08996 * 110.36026 * 118.84346 * 15 14 12 40 40 H 1.09003 * 110.57643 * 107.75726 * 18 10 8 41 41 H 1.08997 * 109.57012 * 346.60957 * 18 10 8 42 42 H 0.96994 * 120.00099 * 179.97438 * 23 22 20 43 43 H 1.07997 * 120.51234 * 180.27921 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0453 1.2095 0.0000 4 6 1.3038 2.3877 -0.0006 5 6 1.9644 3.6029 -0.0011 6 7 3.2793 3.6590 0.0042 7 6 4.0262 2.5611 -0.0004 8 6 5.5034 2.6780 0.0001 9 8 6.1913 1.6887 -0.1572 10 7 6.0840 3.8816 0.1752 11 6 5.2793 5.0582 0.5407 12 6 5.9866 5.7766 1.7033 13 1 5.4263 6.6447 2.0506 14 6 6.2313 4.7388 2.8221 15 6 7.6075 4.1225 2.4954 16 6 8.0689 4.8433 1.2086 17 1 9.1503 4.9763 1.1768 18 6 7.5474 4.0536 -0.0040 19 7 7.3460 6.1384 1.2335 20 6 7.8221 7.3781 0.8997 21 1 8.8851 7.5390 0.7980 22 6 6.9382 8.4282 0.6920 23 7 5.6414 8.2037 0.6768 24 14 7.5894 10.1600 0.4342 25 1 9.0730 10.1452 0.4955 26 1 7.1544 10.6596 -0.8949 27 1 7.0584 11.0517 1.4962 28 6 3.4346 1.3020 0.0000 29 1 -0.3633 0.5140 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0276 -0.0005 32 1 0.2244 2.3532 -0.0003 33 1 1.3928 4.5192 -0.0011 34 1 4.2847 4.7412 0.8542 35 1 5.2001 5.7301 -0.3139 36 1 6.2567 5.2291 3.7953 37 1 5.4567 3.9722 2.8044 38 1 7.5105 3.0518 2.3159 39 1 8.3094 4.3097 3.3080 40 1 7.7590 4.6040 -0.9207 41 1 8.0281 3.0761 -0.0412 42 1 5.0238 8.9375 0.5320 43 1 4.0435 0.4101 0.0009 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001029416983.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:59 Heat of formation + Delta-G solvation = 10.406012 kcal Electronic energy + Delta-G solvation = -27569.287565 eV Core-core repulsion = 23809.278740 eV Total energy + Delta-G solvation = -3760.008825 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.12101 -41.07974 -39.57244 -38.85785 -35.38422 -34.25864 -32.70724 -32.68940 -31.81466 -30.99806 -28.63567 -27.89418 -25.98000 -25.33838 -24.46173 -24.33455 -21.69252 -21.24871 -20.49147 -19.46770 -18.52405 -18.01473 -17.22925 -17.10971 -16.95026 -16.74435 -16.50902 -16.38953 -15.68446 -15.44419 -15.37396 -14.91608 -14.64143 -14.50784 -14.34203 -14.26211 -13.54552 -13.33686 -13.26965 -13.15137 -12.84089 -12.75467 -12.54133 -12.46804 -12.24902 -11.96600 -11.82332 -11.50480 -11.42122 -11.27520 -11.11000 -10.79700 -10.35805 -10.09753 -9.88026 -9.62079 -8.62472 -7.78027 -5.14704 -0.42883 0.22127 1.50763 1.52416 1.61121 1.69896 1.83253 2.28876 2.54264 2.78428 3.11468 3.39023 3.55941 3.60093 3.76653 3.97884 4.04760 4.12055 4.17331 4.23510 4.36164 4.41418 4.42101 4.50733 4.54220 4.67283 4.71990 4.78057 4.81090 4.90520 4.93979 5.02455 5.09539 5.15040 5.22499 5.28838 5.38218 5.58839 5.67347 5.71866 5.89563 6.16799 6.30022 6.52498 6.76736 7.13201 7.13496 7.77150 8.57406 9.32223 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.019818 B = 0.003956 C = 0.003531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.548241 B = 7076.204921 C = 7928.322193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.324 6.324 3 C 0.162 3.838 4 C -0.222 4.222 5 C 0.127 3.873 6 N -0.490 5.490 7 C 0.101 3.899 8 C 0.556 3.444 9 O -0.579 6.579 10 N -0.572 5.572 11 C 0.108 3.892 12 C 0.158 3.842 13 H 0.092 0.908 14 C -0.126 4.126 15 C -0.112 4.112 16 C 0.130 3.870 17 H 0.086 0.914 18 C 0.104 3.896 19 N -0.606 5.606 20 C -0.235 4.235 21 H 0.075 0.925 22 C -0.052 4.052 23 N -0.931 5.931 24 Si 0.971 3.029 25 H -0.273 1.273 26 H -0.297 1.297 27 H -0.293 1.293 28 C -0.157 4.157 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.123 0.877 32 H 0.185 0.815 33 H 0.194 0.806 34 H 0.133 0.867 35 H 0.035 0.965 36 H 0.056 0.944 37 H 0.055 0.945 38 H 0.061 0.939 39 H 0.069 0.931 40 H 0.050 0.950 41 H 0.086 0.914 42 H 0.248 0.752 43 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.082 -13.298 0.809 18.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.236 6.236 3 C 0.109 3.891 4 C -0.243 4.243 5 C -0.031 4.031 6 N -0.206 5.206 7 C -0.035 4.035 8 C 0.343 3.657 9 O -0.460 6.460 10 N -0.301 5.301 11 C -0.015 4.015 12 C 0.050 3.950 13 H 0.109 0.891 14 C -0.165 4.165 15 C -0.151 4.151 16 C 0.023 3.977 17 H 0.104 0.896 18 C -0.020 4.020 19 N -0.328 5.328 20 C -0.364 4.364 21 H 0.093 0.907 22 C -0.247 4.247 23 N -0.578 5.578 24 Si 0.801 3.199 25 H -0.198 1.198 26 H -0.224 1.224 27 H -0.220 1.220 28 C -0.179 4.179 29 H 0.093 0.907 30 H 0.092 0.908 31 H 0.141 0.859 32 H 0.202 0.798 33 H 0.211 0.789 34 H 0.150 0.850 35 H 0.053 0.947 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.080 0.920 39 H 0.087 0.913 40 H 0.068 0.932 41 H 0.104 0.896 42 H 0.058 0.942 43 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -12.246 -12.963 0.677 17.845 hybrid contribution -0.121 0.508 -0.472 0.704 sum -12.366 -12.456 0.205 17.553 Atomic orbital electron populations 1.23550 0.75084 1.06341 1.03182 1.86086 1.24556 1.25366 1.87543 1.19182 0.91318 0.86059 0.92588 1.22740 1.03494 0.91544 1.06485 1.23374 0.89107 0.99253 0.91376 1.67923 1.08551 1.29800 1.14339 1.20745 0.93396 0.89574 0.99753 1.18251 0.86963 0.82999 0.77470 1.90679 1.64392 1.37205 1.53773 1.48448 1.08709 1.08737 1.64208 1.23161 0.96053 0.84243 0.98084 1.22012 0.87132 0.94616 0.91198 0.89067 1.22509 0.96890 0.98098 0.98975 1.22370 0.96957 0.98411 0.97387 1.22111 0.96553 0.86073 0.92985 0.89618 1.22546 0.79916 1.00282 0.99288 1.45407 1.09664 1.01577 1.76105 1.19313 0.91903 0.85433 1.39715 0.90713 1.25492 0.95868 1.01364 1.01980 1.69993 1.01126 1.30698 1.55988 0.85128 0.77681 0.80614 0.76496 1.19771 1.22398 1.21976 1.21292 0.93388 0.98500 1.04723 0.90666 0.90766 0.85900 0.79815 0.78876 0.85044 0.94654 0.92504 0.92588 0.92029 0.91276 0.93175 0.89620 0.94234 0.83868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.10 9.84 113.37 1.12 1.21 16 2 O -0.32 -6.13 10.51 -90.71 -0.95 -7.09 16 3 C 0.16 3.64 6.73 22.74 0.15 3.79 16 4 C -0.22 -3.87 9.12 22.52 0.21 -3.67 16 5 C 0.13 2.83 11.17 84.74 0.95 3.77 16 6 N -0.49 -15.64 6.15 -185.13 -1.14 -16.78 16 7 C 0.10 3.46 6.57 41.85 0.27 3.73 16 8 C 0.56 22.34 7.67 86.89 0.67 23.00 16 9 O -0.58 -25.00 15.85 -3.77 -0.06 -25.06 16 10 N -0.57 -23.89 2.26 -814.86 -1.84 -25.73 16 11 C 0.11 4.76 5.09 86.55 0.44 5.20 16 12 C 0.16 7.34 3.16 45.47 0.14 7.48 16 13 H 0.09 4.84 6.21 -2.39 -0.01 4.83 16 14 C -0.13 -4.95 6.18 31.56 0.20 -4.75 16 15 C -0.11 -4.18 6.19 31.55 0.20 -3.98 16 16 C 0.13 5.42 4.27 45.44 0.19 5.62 16 17 H 0.09 3.35 8.14 -2.39 -0.02 3.34 16 18 C 0.10 4.29 6.05 86.28 0.52 4.81 16 19 N -0.61 -29.97 2.81 -636.73 -1.79 -31.76 16 20 C -0.23 -12.68 10.38 84.04 0.87 -11.81 16 21 H 0.08 3.94 7.84 -2.91 -0.02 3.92 16 22 C -0.05 -2.85 5.44 84.86 0.46 -2.39 16 23 N -0.93 -52.14 10.42 21.65 0.23 -51.91 16 24 Si 0.97 44.59 29.56 68.60 2.03 46.62 16 25 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 26 H -0.30 -13.76 7.11 99.48 0.71 -13.06 16 27 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 28 C -0.16 -4.60 9.60 22.72 0.22 -4.39 16 29 H 0.07 0.42 7.71 -2.39 -0.02 0.40 16 30 H 0.07 0.42 7.71 -2.38 -0.02 0.40 16 31 H 0.12 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.18 1.55 6.45 -2.91 -0.02 1.54 16 33 H 0.19 3.09 8.06 -2.91 -0.02 3.06 16 34 H 0.13 5.36 4.44 -36.92 -0.16 5.20 16 35 H 0.03 1.84 7.95 -2.39 -0.02 1.82 16 36 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 37 H 0.06 2.09 7.84 -2.39 -0.02 2.07 16 38 H 0.06 2.22 7.86 -2.39 -0.02 2.20 16 39 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 40 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 41 H 0.09 3.33 7.11 -2.39 -0.02 3.31 16 42 H 0.25 13.57 8.31 -92.71 -0.77 12.80 16 43 H 0.14 4.34 7.66 -2.91 -0.02 4.32 16 Total: -1.00 -68.74 342.17 3.95 -64.79 By element: Atomic # 1 Polarization: 18.40 SS G_CDS: 0.88 Total: 19.28 kcal Atomic # 6 Polarization: 21.04 SS G_CDS: 6.60 Total: 27.64 kcal Atomic # 7 Polarization: -121.64 SS G_CDS: -4.54 Total: -126.18 kcal Atomic # 8 Polarization: -31.13 SS G_CDS: -1.01 Total: -32.14 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -68.74 3.95 -64.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029416983.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.198 kcal (2) G-P(sol) polarization free energy of solvation -68.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.792 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds