Wall clock time and date at job start Tue Mar 31 2020 11:13:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36944 * 119.70482 * 2 1 4 4 C 1.47886 * 119.75411 * 359.97438 * 3 2 1 5 5 O 1.21541 * 119.99574 * 85.78283 * 4 3 2 6 6 N 1.34771 * 120.00705 * 265.77613 * 4 3 2 7 7 C 1.47161 * 120.71352 * 185.23367 * 6 4 3 8 8 C 1.53893 * 108.02716 * 132.76109 * 7 6 4 9 9 H 1.09001 * 112.09155 * 181.90814 * 8 7 6 10 10 C 1.54544 * 107.83185 * 305.87247 * 8 7 6 11 11 C 1.54281 * 104.85103 * 89.07518 * 10 8 7 12 12 C 1.54545 * 104.84650 * 359.97438 * 11 10 8 13 13 H 1.08999 * 112.18068 * 146.41115 * 12 11 10 14 14 C 1.47173 * 120.70565 * 4.96033 * 6 4 3 15 15 N 1.48314 * 107.20683 * 58.36642 * 8 7 6 16 16 C 1.36931 * 128.07705 * 106.70369 * 15 8 7 17 17 H 1.08003 * 120.00187 * 359.97438 * 16 15 8 18 18 C 1.38813 * 120.00005 * 179.97438 * 16 15 8 19 19 N 1.31624 * 119.99944 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00141 * 179.97438 * 18 16 15 21 21 H 1.48494 * 109.46775 * 90.00254 * 20 18 16 22 22 H 1.48501 * 109.47001 * 209.99631 * 20 18 16 23 23 H 1.48490 * 109.46977 * 330.00140 * 20 18 16 24 24 C 1.36298 * 120.48984 * 180.02562 * 3 2 1 25 25 C 1.40409 * 119.90111 * 359.96892 * 24 3 2 26 26 C 1.36113 * 119.41879 * 0.02562 * 25 24 3 27 27 C 1.34672 * 119.70111 * 179.97438 * 2 1 3 28 28 O 1.21968 * 119.95792 * 0.02562 * 27 2 1 29 29 H 1.09001 * 109.47161 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47303 * 300.05227 * 1 2 3 31 31 H 1.09002 * 109.46556 * 60.05147 * 1 2 3 32 32 H 1.08998 * 109.75039 * 252.39526 * 7 6 4 33 33 H 1.08999 * 109.75158 * 13.07938 * 7 6 4 34 34 H 1.08993 * 110.36365 * 207.91905 * 10 8 7 35 35 H 1.08999 * 110.36384 * 330.12357 * 10 8 7 36 36 H 1.08997 * 110.36128 * 118.83681 * 11 10 8 37 37 H 1.09004 * 110.36050 * 241.15664 * 11 10 8 38 38 H 1.08999 * 109.74735 * 346.87213 * 14 6 4 39 39 H 1.09005 * 109.74723 * 107.60470 * 14 6 4 40 40 H 0.96992 * 119.99992 * 179.97438 * 19 18 16 41 41 H 1.07997 * 120.04713 * 180.25379 * 24 3 2 42 42 H 1.07997 * 120.28891 * 179.97438 * 25 24 3 43 43 H 1.07995 * 120.24406 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1436 1.1895 0.0000 4 6 1.3921 2.4632 -0.0006 5 8 1.0163 2.9474 1.0489 6 7 1.1241 3.0871 -1.1647 7 6 0.4792 4.4098 -1.1775 8 6 1.2645 5.3133 -2.1445 9 1 0.8606 6.3251 -2.1796 10 6 2.7482 5.2918 -1.7127 11 6 3.3657 4.1031 -2.4782 12 6 2.1988 3.5138 -3.3025 13 1 2.5326 3.1113 -4.2589 14 6 1.4757 2.4628 -2.4503 15 7 1.2443 4.6555 -3.4737 16 6 0.5298 5.0175 -4.5843 17 1 -0.1186 5.8806 -4.5517 18 6 0.6386 4.2750 -5.7521 19 7 1.4291 3.2233 -5.7920 20 14 -0.3367 4.7683 -7.2670 21 1 0.4654 5.7119 -8.0863 22 1 -0.6499 3.5588 -8.0696 23 1 -1.6006 5.4263 -6.8492 24 6 3.5065 1.2082 -0.0005 25 6 4.2230 0.0007 -0.0004 26 6 3.5446 -1.1793 -0.0003 27 6 2.1323 -1.1698 0.0005 28 8 1.5162 -2.2224 0.0005 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5146 0.8895 31 1 -0.3632 0.5131 -0.8905 32 1 -0.5517 4.3136 -1.5183 33 1 0.4972 4.8381 -0.1753 34 1 3.2395 6.2223 -1.9971 35 1 2.8280 5.1350 -0.6371 36 1 4.1605 4.4491 -3.1390 37 1 3.7491 3.3598 -1.7790 38 1 2.1454 1.6199 -2.2794 39 1 0.5712 2.1195 -2.9526 40 1 1.5049 2.7043 -6.6079 41 1 4.0344 2.1503 0.0036 42 1 5.3030 0.0082 -0.0012 43 1 4.0823 -2.1159 -0.0006 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001029468169.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:47 Heat of formation + Delta-G solvation = 15.684752 kcal Electronic energy + Delta-G solvation = -28245.389885 eV Core-core repulsion = 24485.609963 eV Total energy + Delta-G solvation = -3759.779922 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.58161 -40.00200 -38.09987 -36.68608 -34.65425 -33.98817 -32.56967 -31.07299 -30.06152 -29.38527 -27.69770 -26.64971 -24.89438 -23.95866 -23.49267 -22.68058 -20.54527 -19.77225 -18.90108 -18.01097 -17.44536 -17.14070 -16.38237 -16.26517 -15.68717 -15.35849 -15.08796 -14.72394 -14.67530 -13.92244 -13.72220 -13.34840 -13.29701 -13.15704 -13.04171 -12.74051 -12.49830 -12.15786 -11.99149 -11.96562 -11.74003 -11.60371 -11.18582 -11.01900 -10.92843 -10.54268 -10.32275 -10.19319 -10.16123 -9.84618 -9.78414 -9.72446 -9.55568 -9.14454 -8.41920 -8.04390 -7.07481 -5.86649 -3.30749 0.61999 1.73730 2.12920 2.81311 3.16025 3.29121 3.35085 3.36528 3.55555 4.27428 4.30783 4.54133 4.81232 4.98791 5.07226 5.17263 5.22662 5.23404 5.33610 5.52293 5.55757 5.60132 5.64503 5.71925 5.76162 5.79173 5.88351 5.94243 6.09331 6.12880 6.20729 6.30223 6.35448 6.39326 6.43705 6.53045 6.68557 6.74939 6.95351 7.02927 7.37426 7.49522 7.64318 7.94859 8.05154 8.14527 8.94938 9.57799 10.28095 11.17546 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.016128 B = 0.004690 C = 0.004311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.728738 B = 5968.482182 C = 6493.793458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 N -0.483 5.483 3 C 0.146 3.854 4 C 0.547 3.453 5 O -0.538 6.538 6 N -0.571 5.571 7 C 0.101 3.899 8 C 0.134 3.866 9 H 0.081 0.919 10 C -0.127 4.127 11 C -0.133 4.133 12 C 0.139 3.861 13 H 0.160 0.840 14 C 0.099 3.901 15 N -0.586 5.586 16 C -0.216 4.216 17 H 0.081 0.919 18 C -0.009 4.009 19 N -0.922 5.922 20 Si 0.918 3.082 21 H -0.288 1.288 22 H -0.290 1.290 23 H -0.282 1.282 24 C -0.195 4.195 25 C -0.014 4.014 26 C -0.234 4.234 27 C 0.517 3.483 28 O -0.554 6.554 29 H 0.107 0.893 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.068 0.932 33 H 0.079 0.921 34 H 0.057 0.943 35 H 0.053 0.947 36 H 0.058 0.942 37 H 0.050 0.950 38 H 0.063 0.937 39 H 0.075 0.925 40 H 0.256 0.744 41 H 0.149 0.851 42 H 0.142 0.858 43 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.747 -2.150 9.367 10.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 N -0.195 5.195 3 C 0.035 3.965 4 C 0.331 3.669 5 O -0.416 6.416 6 N -0.302 5.302 7 C -0.023 4.023 8 C 0.025 3.975 9 H 0.099 0.901 10 C -0.166 4.166 11 C -0.172 4.172 12 C 0.032 3.968 13 H 0.177 0.823 14 C -0.024 4.024 15 N -0.307 5.307 16 C -0.344 4.344 17 H 0.099 0.901 18 C -0.204 4.204 19 N -0.571 5.571 20 Si 0.749 3.251 21 H -0.216 1.216 22 H -0.216 1.216 23 H -0.207 1.207 24 C -0.218 4.218 25 C -0.036 4.036 26 C -0.256 4.256 27 C 0.319 3.681 28 O -0.437 6.437 29 H 0.125 0.875 30 H 0.100 0.900 31 H 0.099 0.901 32 H 0.087 0.913 33 H 0.098 0.902 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.077 0.923 37 H 0.069 0.931 38 H 0.081 0.919 39 H 0.093 0.907 40 H 0.067 0.933 41 H 0.167 0.833 42 H 0.159 0.841 43 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 3.970 -2.596 9.579 10.689 hybrid contribution -0.415 0.256 -0.761 0.904 sum 3.555 -2.340 8.819 9.792 Atomic orbital electron populations 1.22276 0.76965 1.06223 1.03804 1.45451 1.09329 1.05471 1.59293 1.20371 0.93258 0.86183 0.96678 1.17997 0.80357 0.83821 0.84773 1.90812 1.52955 1.66633 1.31182 1.48337 1.56641 1.19452 1.05742 1.22561 0.96851 0.82144 1.00727 1.21948 0.93620 0.95179 0.86728 0.90144 1.22526 0.97015 0.98632 0.98469 1.22614 0.99198 0.97039 0.98320 1.22990 0.87227 0.87529 0.99094 0.82335 1.22685 1.00628 0.96799 0.82303 1.45566 1.49128 1.29431 1.06566 1.19090 1.18297 1.09356 0.87668 0.90078 1.24712 1.00142 0.97511 0.98042 1.69298 1.41206 1.19374 1.27185 0.86014 0.79247 0.77354 0.82529 1.21554 1.21606 1.20734 1.20719 0.90700 1.00236 1.10190 1.21372 1.00880 0.91321 0.90021 1.22253 0.92476 1.00179 1.10683 1.17314 0.89372 0.82383 0.79076 1.90915 1.69957 1.29161 1.53667 0.87488 0.89980 0.90067 0.91337 0.90233 0.92464 0.92782 0.92299 0.93132 0.91902 0.90654 0.93279 0.83316 0.84068 0.83127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.66 9.62 59.85 0.58 1.24 16 2 N -0.48 -7.20 3.02 -122.80 -0.37 -7.57 16 3 C 0.15 2.13 4.50 -82.33 -0.37 1.76 16 4 C 0.55 8.90 5.91 -12.31 -0.07 8.82 16 5 O -0.54 -9.96 16.60 5.33 0.09 -9.88 16 6 N -0.57 -9.53 2.26 -172.91 -0.39 -9.92 16 7 C 0.10 1.71 5.87 -3.22 -0.02 1.69 16 8 C 0.13 2.41 4.27 -65.66 -0.28 2.13 16 9 H 0.08 1.39 8.14 -51.93 -0.42 0.96 16 10 C -0.13 -2.06 6.20 -25.25 -0.16 -2.22 16 11 C -0.13 -2.25 6.20 -25.25 -0.16 -2.40 16 12 C 0.14 2.78 3.59 -65.07 -0.23 2.55 16 13 H 0.16 3.74 5.25 -51.93 -0.27 3.46 16 14 C 0.10 1.79 5.84 -3.46 -0.02 1.77 16 15 N -0.59 -12.78 2.86 -151.72 -0.43 -13.21 16 16 C -0.22 -5.30 10.44 -15.06 -0.16 -5.46 16 17 H 0.08 1.94 7.83 -52.48 -0.41 1.53 16 18 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 19 N -0.92 -23.79 10.22 55.49 0.57 -23.22 16 20 Si 0.92 20.39 29.55 -169.99 -5.02 15.37 16 21 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 22 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 23 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 24 C -0.19 -2.39 9.20 -39.46 -0.36 -2.75 16 25 C -0.01 -0.15 10.08 -39.53 -0.40 -0.55 16 26 C -0.23 -2.89 10.00 -39.21 -0.39 -3.28 16 27 C 0.52 8.07 7.43 -15.17 -0.11 7.95 16 28 O -0.55 -10.20 16.39 4.95 0.08 -10.12 16 29 H 0.11 1.43 6.86 -51.93 -0.36 1.07 16 30 H 0.08 1.07 8.08 -51.93 -0.42 0.65 16 31 H 0.08 1.09 8.08 -51.93 -0.42 0.67 16 32 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.08 1.28 7.16 -51.93 -0.37 0.91 16 34 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.05 0.82 7.84 -51.93 -0.41 0.42 16 36 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.05 0.75 6.84 -51.93 -0.36 0.40 16 38 H 0.06 1.05 6.22 -51.93 -0.32 0.73 16 39 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 40 H 0.26 6.53 8.31 -40.82 -0.34 6.19 16 41 H 0.15 1.62 7.27 -52.49 -0.38 1.24 16 42 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 43 H 0.15 1.57 8.06 -52.49 -0.42 1.15 16 LS Contribution 343.44 15.07 5.18 5.18 Total: -1.00 -29.18 343.44 -8.37 -37.55 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: -5.81 Total: 4.88 kcal Atomic # 6 Polarization: 13.20 SS G_CDS: -2.25 Total: 10.94 kcal Atomic # 7 Polarization: -53.30 SS G_CDS: -0.63 Total: -53.93 kcal Atomic # 8 Polarization: -20.17 SS G_CDS: 0.17 Total: -20.00 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -29.18 -8.37 -37.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029468169.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.236 kcal (2) G-P(sol) polarization free energy of solvation -29.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.551 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds