Wall clock time and date at job start Tue Mar 31 2020 11:13:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36944 * 119.70482 * 2 1 4 4 C 1.47886 * 119.75411 * 359.97438 * 3 2 1 5 5 O 1.21541 * 119.99574 * 85.78283 * 4 3 2 6 6 N 1.34771 * 120.00705 * 265.77613 * 4 3 2 7 7 C 1.47161 * 120.71352 * 185.23367 * 6 4 3 8 8 C 1.53893 * 108.02716 * 132.76109 * 7 6 4 9 9 H 1.09001 * 112.09155 * 181.90814 * 8 7 6 10 10 C 1.54544 * 107.83185 * 305.87247 * 8 7 6 11 11 C 1.54281 * 104.85103 * 89.07518 * 10 8 7 12 12 C 1.54545 * 104.84650 * 359.97438 * 11 10 8 13 13 H 1.08999 * 112.18068 * 146.41115 * 12 11 10 14 14 C 1.47173 * 120.70565 * 4.96033 * 6 4 3 15 15 N 1.48314 * 107.20683 * 58.36642 * 8 7 6 16 16 C 1.36931 * 128.07705 * 106.70369 * 15 8 7 17 17 H 1.08003 * 120.00187 * 359.97438 * 16 15 8 18 18 C 1.38813 * 120.00005 * 179.97438 * 16 15 8 19 19 N 1.31624 * 119.99944 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00141 * 179.97438 * 18 16 15 21 21 H 1.48494 * 109.46775 * 90.00254 * 20 18 16 22 22 H 1.48501 * 109.47001 * 209.99631 * 20 18 16 23 23 H 1.48490 * 109.46977 * 330.00140 * 20 18 16 24 24 C 1.36298 * 120.48984 * 180.02562 * 3 2 1 25 25 C 1.40409 * 119.90111 * 359.96892 * 24 3 2 26 26 C 1.36113 * 119.41879 * 0.02562 * 25 24 3 27 27 C 1.34672 * 119.70111 * 179.97438 * 2 1 3 28 28 O 1.21968 * 119.95792 * 0.02562 * 27 2 1 29 29 H 1.09001 * 109.47161 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47303 * 300.05227 * 1 2 3 31 31 H 1.09002 * 109.46556 * 60.05147 * 1 2 3 32 32 H 1.08998 * 109.75039 * 252.39526 * 7 6 4 33 33 H 1.08999 * 109.75158 * 13.07938 * 7 6 4 34 34 H 1.08993 * 110.36365 * 207.91905 * 10 8 7 35 35 H 1.08999 * 110.36384 * 330.12357 * 10 8 7 36 36 H 1.08997 * 110.36128 * 118.83681 * 11 10 8 37 37 H 1.09004 * 110.36050 * 241.15664 * 11 10 8 38 38 H 1.08999 * 109.74735 * 346.87213 * 14 6 4 39 39 H 1.09005 * 109.74723 * 107.60470 * 14 6 4 40 40 H 0.96992 * 119.99992 * 179.97438 * 19 18 16 41 41 H 1.07997 * 120.04713 * 180.25379 * 24 3 2 42 42 H 1.07997 * 120.28891 * 179.97438 * 25 24 3 43 43 H 1.07995 * 120.24406 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1436 1.1895 0.0000 4 6 1.3921 2.4632 -0.0006 5 8 1.0163 2.9474 1.0489 6 7 1.1241 3.0871 -1.1647 7 6 0.4792 4.4098 -1.1775 8 6 1.2645 5.3133 -2.1445 9 1 0.8606 6.3251 -2.1796 10 6 2.7482 5.2918 -1.7127 11 6 3.3657 4.1031 -2.4782 12 6 2.1988 3.5138 -3.3025 13 1 2.5326 3.1113 -4.2589 14 6 1.4757 2.4628 -2.4503 15 7 1.2443 4.6555 -3.4737 16 6 0.5298 5.0175 -4.5843 17 1 -0.1186 5.8806 -4.5517 18 6 0.6386 4.2750 -5.7521 19 7 1.4291 3.2233 -5.7920 20 14 -0.3367 4.7683 -7.2670 21 1 0.4654 5.7119 -8.0863 22 1 -0.6499 3.5588 -8.0696 23 1 -1.6006 5.4263 -6.8492 24 6 3.5065 1.2082 -0.0005 25 6 4.2230 0.0007 -0.0004 26 6 3.5446 -1.1793 -0.0003 27 6 2.1323 -1.1698 0.0005 28 8 1.5162 -2.2224 0.0005 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5146 0.8895 31 1 -0.3632 0.5131 -0.8905 32 1 -0.5517 4.3136 -1.5183 33 1 0.4972 4.8381 -0.1753 34 1 3.2395 6.2223 -1.9971 35 1 2.8280 5.1350 -0.6371 36 1 4.1605 4.4491 -3.1390 37 1 3.7491 3.3598 -1.7790 38 1 2.1454 1.6199 -2.2794 39 1 0.5712 2.1195 -2.9526 40 1 1.5049 2.7043 -6.6079 41 1 4.0344 2.1503 0.0036 42 1 5.3030 0.0082 -0.0012 43 1 4.0823 -2.1159 -0.0006 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001029468169.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:46 Heat of formation + Delta-G solvation = -0.732534 kcal Electronic energy + Delta-G solvation = -28246.101792 eV Core-core repulsion = 24485.609963 eV Total energy + Delta-G solvation = -3760.491829 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.73616 -41.34859 -39.50247 -37.88562 -35.66988 -35.51294 -34.23853 -32.46325 -31.25400 -31.03797 -28.77505 -28.07092 -26.26500 -25.48664 -24.87203 -23.73542 -21.86842 -21.21762 -20.43897 -19.36618 -18.55011 -18.31975 -17.85848 -17.52289 -16.99459 -16.71861 -16.54054 -16.17578 -15.64026 -15.54283 -15.08645 -14.73535 -14.67785 -14.54069 -14.42858 -13.80791 -13.59423 -13.53785 -13.40719 -13.23768 -13.07841 -12.87303 -12.79012 -12.71064 -12.57168 -11.96392 -11.89588 -11.61547 -11.42683 -11.22531 -11.15864 -11.12996 -11.03627 -10.83196 -9.92314 -9.14113 -8.80624 -7.73251 -5.17568 -0.39042 0.69384 0.90818 1.50480 1.52403 1.58423 1.61460 1.90308 2.50942 2.51566 3.00316 3.37972 3.46326 3.53142 3.93286 4.05847 4.09070 4.11973 4.12412 4.20042 4.21555 4.31395 4.33289 4.37121 4.46889 4.51206 4.67463 4.80139 4.83945 4.90337 4.99846 5.01531 5.03637 5.12891 5.20718 5.29417 5.38620 5.41380 5.55379 5.61266 5.83019 5.87386 6.22100 6.36603 6.78623 6.82437 7.10339 7.75730 8.49794 9.27426 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.016128 B = 0.004690 C = 0.004311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.728738 B = 5968.482182 C = 6493.793458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.051 3.949 2 N -0.486 5.486 3 C 0.113 3.887 4 C 0.558 3.442 5 O -0.558 6.558 6 N -0.570 5.570 7 C 0.107 3.893 8 C 0.129 3.871 9 H 0.086 0.914 10 C -0.117 4.117 11 C -0.124 4.124 12 C 0.131 3.869 13 H 0.127 0.873 14 C 0.119 3.881 15 N -0.607 5.607 16 C -0.219 4.219 17 H 0.081 0.919 18 C -0.058 4.058 19 N -0.940 5.940 20 Si 0.969 3.031 21 H -0.290 1.290 22 H -0.300 1.300 23 H -0.276 1.276 24 C -0.175 4.175 25 C 0.005 3.995 26 C -0.239 4.239 27 C 0.501 3.499 28 O -0.597 6.597 29 H 0.104 0.896 30 H 0.085 0.915 31 H 0.076 0.924 32 H 0.054 0.946 33 H 0.093 0.907 34 H 0.064 0.936 35 H 0.071 0.929 36 H 0.055 0.945 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.042 0.958 40 H 0.248 0.752 41 H 0.172 0.828 42 H 0.190 0.810 43 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.860 -1.535 10.758 12.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 N -0.199 5.199 3 C 0.003 3.997 4 C 0.344 3.656 5 O -0.437 6.437 6 N -0.300 5.300 7 C -0.017 4.017 8 C 0.021 3.979 9 H 0.104 0.896 10 C -0.156 4.156 11 C -0.163 4.163 12 C 0.025 3.975 13 H 0.144 0.856 14 C -0.005 4.005 15 N -0.329 5.329 16 C -0.348 4.348 17 H 0.099 0.901 18 C -0.251 4.251 19 N -0.590 5.590 20 Si 0.800 3.200 21 H -0.218 1.218 22 H -0.227 1.227 23 H -0.202 1.202 24 C -0.198 4.198 25 C -0.016 4.016 26 C -0.260 4.260 27 C 0.305 3.695 28 O -0.484 6.484 29 H 0.123 0.877 30 H 0.104 0.896 31 H 0.095 0.905 32 H 0.073 0.927 33 H 0.112 0.888 34 H 0.083 0.917 35 H 0.090 0.910 36 H 0.073 0.927 37 H 0.095 0.905 38 H 0.096 0.904 39 H 0.060 0.940 40 H 0.058 0.942 41 H 0.189 0.811 42 H 0.207 0.793 43 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 6.094 -1.938 11.005 12.728 hybrid contribution -1.052 0.105 -1.134 1.551 sum 5.042 -1.833 9.871 11.235 Atomic orbital electron populations 1.22236 0.77108 1.06050 1.03693 1.45463 1.09518 1.05647 1.59280 1.20301 0.94090 0.85119 1.00147 1.18104 0.79603 0.84047 0.83895 1.90801 1.53702 1.67452 1.31746 1.48232 1.56829 1.19431 1.05494 1.22429 0.95990 0.82253 1.01011 1.22146 0.95260 0.95351 0.85108 0.89597 1.22447 0.95207 0.98648 0.99279 1.22525 0.97664 0.97771 0.98307 1.22868 0.88370 0.87686 0.98615 0.85641 1.22266 0.99166 0.96631 0.82406 1.45741 1.49334 1.30471 1.07311 1.19337 1.17936 1.08874 0.88634 0.90120 1.25306 1.01531 0.98085 1.00130 1.69540 1.42417 1.20129 1.26955 0.85201 0.78388 0.76404 0.80035 1.21763 1.22658 1.20160 1.21215 0.89732 1.02090 1.06808 1.21812 1.03006 0.89443 0.87339 1.22478 0.90801 1.02102 1.10668 1.17922 0.90720 0.81890 0.78991 1.90887 1.70925 1.30404 1.56144 0.87743 0.89645 0.90503 0.92740 0.88844 0.91743 0.90989 0.92661 0.90535 0.90369 0.93959 0.94216 0.81094 0.79257 0.81238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.40 9.62 127.77 1.23 2.63 16 2 N -0.49 -14.12 3.02 -660.59 -1.99 -16.11 16 3 C 0.11 3.05 4.50 40.45 0.18 3.23 16 4 C 0.56 17.11 5.91 86.80 0.51 17.62 16 5 O -0.56 -19.59 16.60 -3.84 -0.06 -19.66 16 6 N -0.57 -18.25 2.26 -819.24 -1.85 -20.10 16 7 C 0.11 3.49 5.87 86.55 0.51 4.00 16 8 C 0.13 4.45 4.27 45.47 0.19 4.64 16 9 H 0.09 2.84 8.14 -2.39 -0.02 2.82 16 10 C -0.12 -3.44 6.20 31.55 0.20 -3.24 16 11 C -0.12 -3.87 6.20 31.55 0.20 -3.68 16 12 C 0.13 5.21 3.59 45.02 0.16 5.37 16 13 H 0.13 5.99 5.25 -2.39 -0.01 5.98 16 14 C 0.12 4.25 5.84 86.39 0.50 4.76 16 15 N -0.61 -26.33 2.86 -633.91 -1.81 -28.14 16 16 C -0.22 -10.81 10.44 84.03 0.88 -9.94 16 17 H 0.08 3.87 7.83 -2.91 -0.02 3.85 16 18 C -0.06 -2.94 5.50 84.86 0.47 -2.47 16 19 N -0.94 -49.70 10.22 21.65 0.22 -49.48 16 20 Si 0.97 42.58 29.55 68.60 2.03 44.61 16 21 H -0.29 -12.72 7.11 99.48 0.71 -12.01 16 22 H -0.30 -13.52 7.11 99.48 0.71 -12.81 16 23 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 24 C -0.17 -3.54 9.20 22.35 0.21 -3.33 16 25 C 0.01 0.08 10.08 22.30 0.22 0.31 16 26 C -0.24 -5.19 10.00 22.51 0.23 -4.97 16 27 C 0.50 15.17 7.43 84.99 0.63 15.80 16 28 O -0.60 -22.19 16.39 -5.21 -0.09 -22.27 16 29 H 0.10 2.91 6.86 -2.39 -0.02 2.89 16 30 H 0.08 2.25 8.08 -2.39 -0.02 2.23 16 31 H 0.08 2.15 8.08 -2.39 -0.02 2.13 16 32 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.09 2.82 7.16 -2.39 -0.02 2.80 16 34 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.07 1.89 7.84 -2.39 -0.02 1.87 16 36 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.08 1.97 6.84 -2.38 -0.02 1.95 16 38 H 0.08 2.52 6.22 -2.39 -0.01 2.51 16 39 H 0.04 1.78 8.14 -2.38 -0.02 1.76 16 40 H 0.25 13.01 8.31 -92.71 -0.77 12.24 16 41 H 0.17 2.73 7.27 -2.91 -0.02 2.71 16 42 H 0.19 1.29 8.06 -2.91 -0.02 1.27 16 43 H 0.17 2.99 8.06 -2.91 -0.02 2.96 16 Total: -1.00 -64.62 343.44 3.79 -60.84 By element: Atomic # 1 Polarization: 18.57 SS G_CDS: 1.03 Total: 19.59 kcal Atomic # 6 Polarization: 24.41 SS G_CDS: 6.31 Total: 30.73 kcal Atomic # 7 Polarization: -108.40 SS G_CDS: -5.43 Total: -113.83 kcal Atomic # 8 Polarization: -41.78 SS G_CDS: -0.15 Total: -41.93 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.61 kcal Total: -64.62 3.79 -60.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029468169.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.103 kcal (2) G-P(sol) polarization free energy of solvation -64.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds