Wall clock time and date at job start Tue Mar 31 2020 11:39:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35670 * 116.99779 * 2 1 4 4 C 1.39286 * 119.61600 * 180.02562 * 3 2 1 5 5 C 1.38330 * 119.30492 * 179.97438 * 4 3 2 6 6 C 1.38793 * 118.55873 * 359.75073 * 5 4 3 7 7 C 1.39128 * 119.18391 * 0.48974 * 6 5 4 8 8 C 1.48147 * 119.68771 * 179.77479 * 7 6 5 9 9 O 1.21521 * 120.00054 * 350.47195 * 8 7 6 10 10 N 1.34780 * 120.00173 * 170.47127 * 8 7 6 11 11 C 1.47619 * 120.89955 * 177.69570 * 10 8 7 12 12 C 1.53891 * 107.49822 * 132.49291 * 11 10 8 13 13 H 1.09000 * 112.09365 * 182.66055 * 12 11 10 14 14 C 1.54539 * 108.37139 * 307.00308 * 12 11 10 15 15 C 1.54279 * 104.84779 * 89.29612 * 14 12 11 16 16 C 1.54967 * 104.81024 * 359.81555 * 15 14 12 17 17 H 1.08995 * 112.25481 * 146.60339 * 16 15 14 18 18 C 1.47158 * 120.70799 * 358.38030 * 10 8 7 19 19 N 1.48306 * 107.20563 * 59.11398 * 12 11 10 20 20 C 1.36943 * 128.07712 * 106.10053 * 19 12 11 21 21 H 1.08001 * 119.99858 * 15.53992 * 20 19 12 22 22 C 1.38814 * 119.99705 * 195.54738 * 20 19 12 23 23 N 1.31615 * 120.00197 * 9.42040 * 22 20 19 24 24 Si 1.86804 * 119.99549 * 189.42684 * 22 20 19 25 25 H 1.48504 * 109.46874 * 179.97438 * 24 22 20 26 26 H 1.48496 * 109.47232 * 299.99391 * 24 22 20 27 27 H 1.48503 * 109.47260 * 59.99842 * 24 22 20 28 28 N 1.31905 * 119.61632 * 0.02562 * 3 2 1 29 29 H 1.08998 * 109.47170 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47297 * 299.99787 * 1 2 3 31 31 H 1.09003 * 109.47098 * 60.00259 * 1 2 3 32 32 H 1.07996 * 120.34565 * 359.95036 * 4 3 2 33 33 H 1.07996 * 120.71976 * 180.02562 * 5 4 3 34 34 H 1.07990 * 120.40356 * 180.24928 * 6 5 4 35 35 H 1.09000 * 109.39008 * 13.38029 * 11 10 8 36 36 H 1.08999 * 110.63547 * 252.31847 * 11 10 8 37 37 H 1.08995 * 110.36640 * 208.13941 * 14 12 11 38 38 H 1.09004 * 110.36401 * 330.46063 * 14 12 11 39 39 H 1.08998 * 110.36251 * 118.84583 * 15 14 12 40 40 H 1.09002 * 110.36698 * 241.05139 * 15 14 12 41 41 H 1.09007 * 109.74753 * 107.60866 * 18 10 8 42 42 H 1.08995 * 109.75115 * 346.88228 * 18 10 8 43 43 H 0.97003 * 119.99998 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 3.4363 1.2725 -0.0005 5 6 4.0575 2.5084 -0.0011 6 6 3.2663 3.6487 -0.0064 7 6 1.8816 3.5137 -0.0005 8 6 1.0265 4.7235 -0.0010 9 8 1.5239 5.8193 0.1678 10 7 -0.3033 4.6087 -0.1887 11 6 -1.1805 5.7951 -0.1427 12 6 -2.1050 5.7348 -1.3715 13 1 -2.7574 6.6056 -1.4368 14 6 -1.2282 5.5668 -2.6330 15 6 -1.0751 4.0416 -2.8077 16 6 -1.8718 3.4260 -1.6296 17 1 -2.3405 2.4793 -1.8983 18 6 -0.9174 3.2933 -0.4299 19 7 -2.8696 4.4671 -1.2835 20 6 -4.1879 4.2971 -0.9539 21 1 -4.8602 5.1422 -0.9635 22 6 -4.6598 3.0385 -0.6073 23 7 -3.8141 2.0486 -0.4146 24 14 -6.4954 2.7498 -0.4148 25 1 -6.7372 1.3322 -0.0441 26 1 -7.0271 3.6379 0.6499 27 1 -7.1809 3.0494 -1.6976 28 7 1.3190 2.3102 0.0005 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 4.0239 0.3664 -0.0002 33 1 5.1348 2.5844 -0.0019 34 1 3.7200 4.6287 -0.0110 35 1 -0.5709 6.6977 -0.1844 36 1 -1.7786 5.7955 0.7685 37 1 -1.7252 6.0000 -3.5009 38 1 -0.2535 6.0309 -2.4820 39 1 -1.4968 3.7249 -3.7615 40 1 -0.0250 3.7560 -2.7446 41 1 -1.4760 2.9804 0.4523 42 1 -0.1424 2.5607 -0.6548 43 1 -4.1439 1.1692 -0.1720 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001029538914.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:49 Heat of formation + Delta-G solvation = 30.803269 kcal Electronic energy + Delta-G solvation = -28377.491654 eV Core-core repulsion = 24618.367321 eV Total energy + Delta-G solvation = -3759.124334 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.96599 -39.58265 -38.11876 -37.21151 -33.91218 -32.78962 -32.13586 -30.89859 -30.25700 -29.21807 -27.38648 -26.25308 -24.55924 -23.69689 -23.23279 -22.77445 -20.46063 -19.63662 -18.88795 -17.75237 -17.66704 -16.24599 -16.12981 -15.98372 -15.57706 -15.38529 -15.25217 -14.58687 -14.11514 -13.87824 -13.73433 -13.55527 -13.08765 -12.95952 -12.88304 -12.63580 -12.16778 -11.75925 -11.71007 -11.65862 -11.45056 -11.16317 -10.95558 -10.89769 -10.76621 -10.36691 -10.16208 -10.05058 -9.92439 -9.75845 -9.59696 -9.49792 -9.05092 -8.57133 -8.38715 -7.95428 -6.78493 -5.84251 -3.17670 0.73672 1.24506 3.04090 3.14278 3.35627 3.40520 3.41261 3.47149 3.95971 4.22082 4.42941 4.82081 4.94625 4.99554 5.17930 5.28317 5.33811 5.44350 5.53783 5.67046 5.70483 5.75368 5.81639 5.91189 6.00173 6.02420 6.07164 6.14994 6.28133 6.32877 6.42025 6.47252 6.58831 6.66732 6.80166 6.85892 6.93024 7.10082 7.35869 7.41110 7.48168 7.66845 7.72447 8.11149 8.16008 8.62087 9.06880 9.68612 10.46931 11.28825 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014932 B = 0.005470 C = 0.004366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.670886 B = 5117.503118 C = 6411.690761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.310 6.310 3 C 0.315 3.685 4 C -0.177 4.177 5 C -0.048 4.048 6 C -0.156 4.156 7 C 0.132 3.868 8 C 0.554 3.446 9 O -0.559 6.559 10 N -0.564 5.564 11 C 0.098 3.902 12 C 0.134 3.866 13 H 0.077 0.923 14 C -0.123 4.123 15 C -0.136 4.136 16 C 0.166 3.834 17 H 0.116 0.884 18 C 0.066 3.934 19 N -0.586 5.586 20 C -0.223 4.223 21 H 0.075 0.925 22 C -0.002 4.002 23 N -0.913 5.913 24 Si 0.911 3.089 25 H -0.291 1.291 26 H -0.285 1.285 27 H -0.286 1.286 28 N -0.494 5.494 29 H 0.096 0.904 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.143 0.857 33 H 0.146 0.854 34 H 0.148 0.852 35 H 0.074 0.926 36 H 0.066 0.934 37 H 0.054 0.946 38 H 0.054 0.946 39 H 0.052 0.948 40 H 0.046 0.954 41 H 0.076 0.924 42 H 0.132 0.868 43 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.968 -2.258 -0.840 13.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.216 6.216 3 C 0.135 3.865 4 C -0.198 4.198 5 C -0.074 4.074 6 C -0.178 4.178 7 C -0.005 4.005 8 C 0.340 3.660 9 O -0.439 6.439 10 N -0.292 5.292 11 C -0.026 4.026 12 C 0.026 3.974 13 H 0.095 0.905 14 C -0.162 4.162 15 C -0.175 4.175 16 C 0.059 3.941 17 H 0.134 0.866 18 C -0.057 4.057 19 N -0.307 5.307 20 C -0.352 4.352 21 H 0.092 0.908 22 C -0.199 4.199 23 N -0.560 5.560 24 Si 0.741 3.259 25 H -0.216 1.216 26 H -0.212 1.212 27 H -0.213 1.213 28 N -0.221 5.221 29 H 0.115 0.885 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.161 0.839 33 H 0.164 0.836 34 H 0.166 0.834 35 H 0.093 0.907 36 H 0.085 0.915 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.070 0.930 40 H 0.064 0.936 41 H 0.094 0.906 42 H 0.148 0.852 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 12.141 -2.209 -0.672 12.358 hybrid contribution -0.485 -0.104 0.236 0.549 sum 11.656 -2.313 -0.436 11.891 Atomic orbital electron populations 1.23099 0.75618 1.03387 1.03884 1.86210 1.23955 1.23937 1.87538 1.20144 0.89511 0.85165 0.91714 1.21237 0.92061 0.99664 1.06804 1.21392 1.00613 0.90916 0.94456 1.21917 0.93007 1.00623 1.02239 1.21037 0.92246 0.90501 0.96672 1.17891 0.82431 0.86973 0.78728 1.90713 1.73847 1.26390 1.52967 1.48294 1.04957 1.10804 1.65158 1.22537 0.92359 0.87210 1.00498 1.21954 0.91683 0.91925 0.91873 0.90520 1.22457 0.98784 0.96779 0.98212 1.22700 0.98920 0.95779 1.00109 1.22036 0.87378 0.95185 0.89533 0.86644 1.23910 0.98252 0.82498 1.01043 1.45211 1.06462 1.00090 1.78936 1.18965 0.82626 0.94699 1.38868 0.90773 1.24789 0.97801 0.96686 1.00664 1.69834 1.32178 1.01568 1.52374 0.86225 0.84890 0.76881 0.77866 1.21645 1.21199 1.21270 1.67738 1.37747 0.98404 1.18190 0.88548 0.91539 0.91141 0.83937 0.83647 0.83436 0.90735 0.91539 0.92720 0.92754 0.92965 0.93552 0.90600 0.85166 0.93665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 10.09 101.05 1.02 1.51 16 2 O -0.31 -4.39 10.48 -18.71 -0.20 -4.59 16 3 C 0.31 4.56 7.49 -17.13 -0.13 4.43 16 4 C -0.18 -2.00 10.05 -39.16 -0.39 -2.40 16 5 C -0.05 -0.50 10.16 -39.34 -0.40 -0.90 16 6 C -0.16 -2.09 9.62 -39.05 -0.38 -2.47 16 7 C 0.13 2.20 6.62 -83.03 -0.55 1.65 16 8 C 0.55 10.74 7.69 -12.19 -0.09 10.64 16 9 O -0.56 -11.62 15.83 5.35 0.08 -11.53 16 10 N -0.56 -11.36 2.24 -172.16 -0.39 -11.75 16 11 C 0.10 1.97 6.00 -2.96 -0.02 1.95 16 12 C 0.13 2.74 4.27 -65.66 -0.28 2.46 16 13 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 14 C -0.12 -2.31 6.18 -25.25 -0.16 -2.46 16 15 C -0.14 -2.65 6.21 -25.02 -0.16 -2.81 16 16 C 0.17 3.69 3.14 -65.44 -0.21 3.48 16 17 H 0.12 2.87 6.38 -51.93 -0.33 2.54 16 18 C 0.07 1.37 5.29 -3.23 -0.02 1.36 16 19 N -0.59 -13.96 2.80 -152.35 -0.43 -14.39 16 20 C -0.22 -5.83 10.37 -15.06 -0.16 -5.98 16 21 H 0.07 1.90 7.85 -52.49 -0.41 1.49 16 22 C 0.00 -0.06 5.42 -17.43 -0.09 -0.16 16 23 N -0.91 -24.01 10.41 55.49 0.58 -23.43 16 24 Si 0.91 20.99 29.56 -169.99 -5.03 15.96 16 25 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 26 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 27 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 28 N -0.49 -8.15 5.06 -9.87 -0.05 -8.20 16 29 H 0.10 1.11 8.14 -51.93 -0.42 0.68 16 30 H 0.07 1.02 8.10 -51.93 -0.42 0.60 16 31 H 0.07 1.08 7.17 -51.93 -0.37 0.71 16 32 H 0.14 1.24 8.06 -52.49 -0.42 0.81 16 33 H 0.15 0.96 8.06 -52.49 -0.42 0.53 16 34 H 0.15 1.86 7.66 -52.49 -0.40 1.45 16 35 H 0.07 1.42 7.10 -51.93 -0.37 1.06 16 36 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 37 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.05 0.99 7.86 -51.93 -0.41 0.58 16 39 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.05 0.87 7.85 -51.93 -0.41 0.46 16 41 H 0.08 1.84 7.81 -51.93 -0.41 1.44 16 42 H 0.13 2.54 2.59 -88.84 -0.23 2.31 16 43 H 0.25 6.53 8.31 -40.82 -0.34 6.19 16 LS Contribution 341.81 15.07 5.15 5.15 Total: -1.00 -29.08 341.81 -8.13 -37.21 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -5.85 Total: 5.26 kcal Atomic # 6 Polarization: 12.31 SS G_CDS: -2.00 Total: 10.31 kcal Atomic # 7 Polarization: -57.48 SS G_CDS: -0.28 Total: -57.77 kcal Atomic # 8 Polarization: -16.01 SS G_CDS: -0.11 Total: -16.12 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.03 Total: 15.96 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -29.08 -8.13 -37.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029538914.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.009 kcal (2) G-P(sol) polarization free energy of solvation -29.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.206 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds