Wall clock time and date at job start Tue Mar 31 2020 11:39:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35670 * 116.99779 * 2 1 4 4 C 1.39286 * 119.61600 * 180.02562 * 3 2 1 5 5 C 1.38330 * 119.30492 * 179.97438 * 4 3 2 6 6 C 1.38793 * 118.55873 * 359.75073 * 5 4 3 7 7 C 1.39128 * 119.18391 * 0.48974 * 6 5 4 8 8 C 1.48147 * 119.68771 * 179.77479 * 7 6 5 9 9 O 1.21521 * 120.00054 * 350.47195 * 8 7 6 10 10 N 1.34780 * 120.00173 * 170.47127 * 8 7 6 11 11 C 1.47619 * 120.89955 * 177.69570 * 10 8 7 12 12 C 1.53891 * 107.49822 * 132.49291 * 11 10 8 13 13 H 1.09000 * 112.09365 * 182.66055 * 12 11 10 14 14 C 1.54539 * 108.37139 * 307.00308 * 12 11 10 15 15 C 1.54279 * 104.84779 * 89.29612 * 14 12 11 16 16 C 1.54967 * 104.81024 * 359.81555 * 15 14 12 17 17 H 1.08995 * 112.25481 * 146.60339 * 16 15 14 18 18 C 1.47158 * 120.70799 * 358.38030 * 10 8 7 19 19 N 1.48306 * 107.20563 * 59.11398 * 12 11 10 20 20 C 1.36943 * 128.07712 * 106.10053 * 19 12 11 21 21 H 1.08001 * 119.99858 * 15.53992 * 20 19 12 22 22 C 1.38814 * 119.99705 * 195.54738 * 20 19 12 23 23 N 1.31615 * 120.00197 * 9.42040 * 22 20 19 24 24 Si 1.86804 * 119.99549 * 189.42684 * 22 20 19 25 25 H 1.48504 * 109.46874 * 179.97438 * 24 22 20 26 26 H 1.48496 * 109.47232 * 299.99391 * 24 22 20 27 27 H 1.48503 * 109.47260 * 59.99842 * 24 22 20 28 28 N 1.31905 * 119.61632 * 0.02562 * 3 2 1 29 29 H 1.08998 * 109.47170 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47297 * 299.99787 * 1 2 3 31 31 H 1.09003 * 109.47098 * 60.00259 * 1 2 3 32 32 H 1.07996 * 120.34565 * 359.95036 * 4 3 2 33 33 H 1.07996 * 120.71976 * 180.02562 * 5 4 3 34 34 H 1.07990 * 120.40356 * 180.24928 * 6 5 4 35 35 H 1.09000 * 109.39008 * 13.38029 * 11 10 8 36 36 H 1.08999 * 110.63547 * 252.31847 * 11 10 8 37 37 H 1.08995 * 110.36640 * 208.13941 * 14 12 11 38 38 H 1.09004 * 110.36401 * 330.46063 * 14 12 11 39 39 H 1.08998 * 110.36251 * 118.84583 * 15 14 12 40 40 H 1.09002 * 110.36698 * 241.05139 * 15 14 12 41 41 H 1.09007 * 109.74753 * 107.60866 * 18 10 8 42 42 H 1.08995 * 109.75115 * 346.88228 * 18 10 8 43 43 H 0.97003 * 119.99998 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 3.4363 1.2725 -0.0005 5 6 4.0575 2.5084 -0.0011 6 6 3.2663 3.6487 -0.0064 7 6 1.8816 3.5137 -0.0005 8 6 1.0265 4.7235 -0.0010 9 8 1.5239 5.8193 0.1678 10 7 -0.3033 4.6087 -0.1887 11 6 -1.1805 5.7951 -0.1427 12 6 -2.1050 5.7348 -1.3715 13 1 -2.7574 6.6056 -1.4368 14 6 -1.2282 5.5668 -2.6330 15 6 -1.0751 4.0416 -2.8077 16 6 -1.8718 3.4260 -1.6296 17 1 -2.3405 2.4793 -1.8983 18 6 -0.9174 3.2933 -0.4299 19 7 -2.8696 4.4671 -1.2835 20 6 -4.1879 4.2971 -0.9539 21 1 -4.8602 5.1422 -0.9635 22 6 -4.6598 3.0385 -0.6073 23 7 -3.8141 2.0486 -0.4146 24 14 -6.4954 2.7498 -0.4148 25 1 -6.7372 1.3322 -0.0441 26 1 -7.0271 3.6379 0.6499 27 1 -7.1809 3.0494 -1.6976 28 7 1.3190 2.3102 0.0005 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 4.0239 0.3664 -0.0002 33 1 5.1348 2.5844 -0.0019 34 1 3.7200 4.6287 -0.0110 35 1 -0.5709 6.6977 -0.1844 36 1 -1.7786 5.7955 0.7685 37 1 -1.7252 6.0000 -3.5009 38 1 -0.2535 6.0309 -2.4820 39 1 -1.4968 3.7249 -3.7615 40 1 -0.0250 3.7560 -2.7446 41 1 -1.4760 2.9804 0.4523 42 1 -0.1424 2.5607 -0.6548 43 1 -4.1439 1.1692 -0.1720 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001029538914.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:48 Heat of formation + Delta-G solvation = 13.571314 kcal Electronic energy + Delta-G solvation = -28378.238888 eV Core-core repulsion = 24618.367321 eV Total energy + Delta-G solvation = -3759.871567 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.21578 -41.01920 -39.53797 -38.49413 -35.50825 -34.41385 -33.52486 -32.25112 -31.66039 -31.03448 -28.65893 -27.74760 -26.09964 -25.34179 -24.71538 -23.86202 -21.86741 -21.31263 -20.54718 -19.21772 -18.94793 -17.81791 -17.30101 -17.14496 -16.98297 -16.83064 -16.69627 -16.39469 -15.61728 -15.33257 -15.08657 -14.75565 -14.66588 -14.55131 -14.23248 -14.16272 -13.56180 -13.30654 -13.17796 -13.11664 -12.88992 -12.73567 -12.63881 -12.57449 -12.14606 -12.03579 -11.88647 -11.61719 -11.46761 -11.33375 -11.15008 -10.96541 -10.81605 -9.96662 -9.78304 -9.46257 -8.64174 -7.82041 -5.16960 -0.37216 0.25287 1.49785 1.50636 1.56424 1.70948 1.99887 2.11051 2.51863 2.77719 2.98169 3.35661 3.51815 3.68734 3.95446 4.04145 4.08837 4.10000 4.19750 4.23870 4.38289 4.44374 4.45559 4.47469 4.52501 4.64856 4.77687 4.86429 4.87370 4.97873 4.98354 5.06047 5.12732 5.15558 5.19573 5.32898 5.38719 5.54906 5.60086 5.62907 5.83702 6.18013 6.26546 6.48373 6.63967 7.10328 7.10707 7.74179 8.55121 9.29029 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014932 B = 0.005470 C = 0.004366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.670886 B = 5117.503118 C = 6411.690761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.309 6.309 3 C 0.292 3.708 4 C -0.155 4.155 5 C -0.029 4.029 6 C -0.146 4.146 7 C 0.095 3.905 8 C 0.554 3.446 9 O -0.576 6.576 10 N -0.573 5.573 11 C 0.102 3.898 12 C 0.130 3.870 13 H 0.085 0.915 14 C -0.111 4.111 15 C -0.126 4.126 16 C 0.163 3.837 17 H 0.085 0.915 18 C 0.088 3.912 19 N -0.605 5.605 20 C -0.240 4.240 21 H 0.073 0.927 22 C -0.048 4.048 23 N -0.927 5.927 24 Si 0.969 3.031 25 H -0.294 1.294 26 H -0.285 1.285 27 H -0.283 1.283 28 N -0.523 5.523 29 H 0.122 0.878 30 H 0.044 0.956 31 H 0.050 0.950 32 H 0.179 0.821 33 H 0.198 0.802 34 H 0.156 0.844 35 H 0.086 0.914 36 H 0.045 0.955 37 H 0.069 0.931 38 H 0.062 0.938 39 H 0.056 0.944 40 H 0.054 0.946 41 H 0.030 0.970 42 H 0.151 0.849 43 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.699 -2.684 -1.459 15.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 O -0.215 6.215 3 C 0.112 3.888 4 C -0.176 4.176 5 C -0.054 4.054 6 C -0.168 4.168 7 C -0.040 4.040 8 C 0.342 3.658 9 O -0.458 6.458 10 N -0.302 5.302 11 C -0.022 4.022 12 C 0.022 3.978 13 H 0.103 0.897 14 C -0.150 4.150 15 C -0.165 4.165 16 C 0.055 3.945 17 H 0.103 0.897 18 C -0.035 4.035 19 N -0.327 5.327 20 C -0.369 4.369 21 H 0.091 0.909 22 C -0.243 4.243 23 N -0.574 5.574 24 Si 0.799 3.201 25 H -0.220 1.220 26 H -0.211 1.211 27 H -0.210 1.210 28 N -0.250 5.250 29 H 0.140 0.860 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.197 0.803 33 H 0.215 0.785 34 H 0.174 0.826 35 H 0.104 0.896 36 H 0.063 0.937 37 H 0.088 0.912 38 H 0.081 0.919 39 H 0.075 0.925 40 H 0.072 0.928 41 H 0.049 0.951 42 H 0.166 0.834 43 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 14.895 -2.607 -1.297 15.177 hybrid contribution -1.198 0.005 0.483 1.291 sum 13.698 -2.602 -0.814 13.966 Atomic orbital electron populations 1.22982 0.76010 1.04413 1.01793 1.86215 1.23489 1.24032 1.87805 1.20559 0.90919 0.84478 0.92894 1.21730 0.90557 1.01638 1.03655 1.21936 1.02685 0.89017 0.91719 1.22158 0.91637 1.02384 1.00574 1.20733 0.93175 0.89432 1.00640 1.18348 0.82097 0.87971 0.77428 1.90680 1.74055 1.27441 1.53608 1.48309 1.05587 1.10212 1.66056 1.22402 0.92421 0.87948 0.99450 1.22126 0.91832 0.90996 0.92824 0.89687 1.22360 0.98885 0.96104 0.97683 1.22581 0.98803 0.96216 0.98934 1.21957 0.87502 0.93845 0.91156 0.89748 1.23612 0.98118 0.83408 0.98395 1.45384 1.06327 1.01744 1.79210 1.19218 0.83946 0.94845 1.38872 0.90922 1.25455 1.01105 0.96696 1.01044 1.70003 1.33183 1.01441 1.52798 0.85314 0.80951 0.76257 0.77606 1.21978 1.21122 1.20968 1.67264 1.39322 0.99076 1.19348 0.85960 0.93705 0.93129 0.80349 0.78524 0.82584 0.89595 0.93657 0.91213 0.91908 0.92502 0.92762 0.95108 0.83383 0.94183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.24 10.09 113.37 1.14 2.38 16 2 O -0.31 -8.45 10.48 -89.87 -0.94 -9.39 16 3 C 0.29 7.99 7.49 84.93 0.64 8.62 16 4 C -0.16 -2.86 10.05 22.54 0.23 -2.63 16 5 C -0.03 -0.45 10.16 22.42 0.23 -0.23 16 6 C -0.15 -3.48 9.62 22.62 0.22 -3.26 16 7 C 0.09 3.09 6.62 41.84 0.28 3.37 16 8 C 0.55 21.55 7.69 86.88 0.67 22.22 16 9 O -0.58 -23.75 15.83 -3.78 -0.06 -23.81 16 10 N -0.57 -23.75 2.24 -816.89 -1.83 -25.57 16 11 C 0.10 4.22 6.00 86.47 0.52 4.74 16 12 C 0.13 5.37 4.27 45.47 0.19 5.57 16 13 H 0.09 3.32 8.14 -2.39 -0.02 3.30 16 14 C -0.11 -4.08 6.18 31.55 0.20 -3.88 16 15 C -0.13 -4.92 6.21 31.70 0.20 -4.72 16 16 C 0.16 7.50 3.14 45.61 0.14 7.64 16 17 H 0.08 4.42 6.38 -2.39 -0.02 4.40 16 18 C 0.09 3.85 5.29 86.55 0.46 4.31 16 19 N -0.60 -29.73 2.80 -635.93 -1.78 -31.51 16 20 C -0.24 -12.90 10.37 84.03 0.87 -12.03 16 21 H 0.07 3.81 7.85 -2.91 -0.02 3.79 16 22 C -0.05 -2.57 5.42 84.86 0.46 -2.11 16 23 N -0.93 -50.89 10.41 21.65 0.23 -50.66 16 24 Si 0.97 44.20 29.56 68.60 2.03 46.22 16 25 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 26 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 27 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 28 N -0.52 -17.21 5.06 -298.20 -1.51 -18.72 16 29 H 0.12 2.79 8.14 -2.39 -0.02 2.77 16 30 H 0.04 1.46 8.10 -2.39 -0.02 1.44 16 31 H 0.05 1.64 7.17 -2.39 -0.02 1.62 16 32 H 0.18 2.05 8.06 -2.91 -0.02 2.03 16 33 H 0.20 1.16 8.06 -2.91 -0.02 1.13 16 34 H 0.16 3.45 7.66 -2.92 -0.02 3.43 16 35 H 0.09 3.31 7.10 -2.39 -0.02 3.29 16 36 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 37 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 38 H 0.06 2.20 7.86 -2.38 -0.02 2.18 16 39 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 40 H 0.05 2.01 7.85 -2.39 -0.02 1.99 16 41 H 0.03 1.60 7.81 -2.38 -0.02 1.58 16 42 H 0.15 6.03 2.59 -75.26 -0.20 5.83 16 43 H 0.25 13.35 8.31 -92.71 -0.77 12.58 16 Total: -1.00 -65.89 341.81 3.41 -62.48 By element: Atomic # 1 Polarization: 20.15 SS G_CDS: 0.84 Total: 20.99 kcal Atomic # 6 Polarization: 23.55 SS G_CDS: 6.43 Total: 29.98 kcal Atomic # 7 Polarization: -121.58 SS G_CDS: -4.89 Total: -126.47 kcal Atomic # 8 Polarization: -32.19 SS G_CDS: -1.00 Total: -33.19 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.22 kcal Total: -65.89 3.41 -62.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029538914.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.050 kcal (2) G-P(sol) polarization free energy of solvation -65.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.479 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds