Wall clock time and date at job start Tue Mar 31 2020 11:13:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.35444 * 119.46925 * 2 1 4 4 C 1.35753 * 121.22949 * 179.97438 * 3 2 1 5 5 C 1.39475 * 120.13399 * 359.79194 * 4 3 2 6 6 C 1.39340 * 118.95499 * 0.45762 * 5 4 3 7 7 C 1.47077 * 120.58279 * 179.80045 * 6 5 4 8 8 O 1.21650 * 120.00278 * 311.50823 * 7 6 5 9 9 N 1.34778 * 120.00103 * 131.50687 * 7 6 5 10 10 C 1.47164 * 120.71197 * 185.48939 * 9 7 6 11 11 C 1.53891 * 108.02963 * 132.73520 * 10 9 7 12 12 H 1.09000 * 112.09367 * 181.90372 * 11 10 9 13 13 C 1.54541 * 108.37070 * 306.25509 * 11 10 9 14 14 C 1.54831 * 104.74525 * 89.17144 * 13 11 10 15 15 C 1.54551 * 104.74318 * 0.02562 * 14 13 11 16 16 H 1.08999 * 112.68221 * 146.81013 * 15 14 13 17 17 C 1.47161 * 120.70466 * 5.47178 * 9 7 6 18 18 N 1.48306 * 104.35519 * 24.82171 * 15 14 13 19 19 C 1.36944 * 128.07217 * 139.08561 * 18 15 14 20 20 H 1.07998 * 119.99847 * 344.76657 * 19 18 15 21 21 C 1.38812 * 119.99951 * 164.77269 * 19 18 15 22 22 N 1.31615 * 120.00053 * 350.73403 * 21 19 18 23 23 Si 1.86801 * 119.99995 * 170.73307 * 21 19 18 24 24 H 1.48504 * 109.46960 * 270.00052 * 23 21 19 25 25 H 1.48500 * 109.47043 * 29.99426 * 23 21 19 26 26 H 1.48493 * 109.47351 * 149.99965 * 23 21 19 27 27 C 1.34649 * 119.47906 * 180.02562 * 2 1 3 28 28 O 1.21895 * 120.09891 * 359.95216 * 27 2 1 29 29 H 1.08997 * 109.46997 * 269.97687 * 1 2 3 30 30 H 1.08998 * 109.47148 * 29.98144 * 1 2 3 31 31 H 1.09006 * 109.46962 * 149.97573 * 1 2 3 32 32 H 1.07995 * 119.38395 * 0.02747 * 3 2 1 33 33 H 1.08008 * 119.93222 * 180.02562 * 4 3 2 34 34 H 1.08000 * 120.52105 * 180.24160 * 5 4 3 35 35 H 1.09002 * 109.74951 * 13.11119 * 10 9 7 36 36 H 1.08994 * 109.79387 * 252.39803 * 10 9 7 37 37 H 1.09004 * 110.36376 * 208.14102 * 13 11 10 38 38 H 1.08994 * 110.36542 * 330.45319 * 13 11 10 39 39 H 1.08999 * 110.30327 * 241.24782 * 14 13 11 40 40 H 1.09001 * 110.61274 * 118.90973 * 14 13 11 41 41 H 1.08992 * 109.75603 * 346.89528 * 17 9 7 42 42 H 1.09001 * 109.74967 * 107.58111 * 17 9 7 43 43 H 0.96996 * 120.00369 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1313 1.1792 0.0000 4 6 3.4882 1.2209 0.0005 5 6 4.2251 0.0367 0.0054 6 6 3.5464 -1.1802 0.0001 7 6 4.2877 -2.4505 0.0006 8 8 5.2007 -2.6223 -0.7848 9 7 3.9556 -3.4242 0.8712 10 6 4.7606 -4.6524 0.9682 11 6 5.0283 -4.9300 2.4580 12 1 5.6512 -5.8123 2.6051 13 6 5.6534 -3.6633 3.0848 14 6 4.4444 -2.8239 3.5656 15 6 3.2051 -3.6646 3.1836 16 1 2.3860 -3.5526 3.8939 17 6 2.7805 -3.2817 1.7456 18 7 3.7097 -5.0579 3.1252 19 6 3.0982 -6.1972 3.5762 20 1 2.2581 -6.1279 4.2514 21 6 3.5581 -7.4409 3.1657 22 7 4.4567 -7.5269 2.2080 23 14 2.9015 -8.9924 3.9726 24 1 3.7504 -9.3402 5.1404 25 1 1.5063 -8.7622 4.4260 26 1 2.9260 -10.1082 2.9931 27 6 2.1276 -1.1722 -0.0005 28 8 1.5103 -2.2233 -0.0001 29 1 -0.3633 -0.0004 1.0276 30 1 -0.3633 0.8901 -0.5135 31 1 -0.3633 -0.8898 -0.5142 32 1 1.5727 2.1035 0.0005 33 1 3.9981 2.1730 0.0009 34 1 5.3048 0.0626 0.0098 35 1 5.7061 -4.5154 0.4434 36 1 4.2139 -5.4875 0.5303 37 1 6.2911 -3.9319 3.9270 38 1 6.2234 -3.1118 2.3372 39 1 4.4237 -1.8623 3.0528 40 1 4.4844 -2.6767 4.6449 41 1 2.4319 -2.2492 1.7288 42 1 1.9852 -3.9445 1.4046 43 1 4.7778 -8.3960 1.9208 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001029557152.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:50 Heat of formation + Delta-G solvation = 26.383471 kcal Electronic energy + Delta-G solvation = -28310.913402 eV Core-core repulsion = 24551.597411 eV Total energy + Delta-G solvation = -3759.315990 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.61427 -39.57114 -37.59066 -37.11916 -34.54655 -33.45261 -32.23192 -30.60775 -29.98903 -29.12959 -27.87879 -26.28603 -24.75664 -23.69550 -23.18943 -22.72840 -20.20254 -19.55326 -18.64937 -17.91784 -17.44539 -16.91758 -16.34161 -16.12150 -15.54783 -15.10524 -14.90849 -14.58419 -14.53559 -13.73432 -13.70333 -13.13612 -13.02944 -12.87855 -12.80927 -12.65650 -12.35323 -12.28836 -11.97653 -11.63264 -11.53636 -11.31036 -10.92185 -10.78315 -10.67318 -10.28582 -10.13078 -10.07763 -9.91042 -9.76585 -9.52546 -9.38347 -9.20471 -8.67859 -8.06154 -7.83202 -6.70768 -5.74598 -3.09323 0.47994 1.74922 2.38939 3.11846 3.41701 3.46974 3.49067 3.64046 3.87903 4.26927 4.44056 4.49818 4.80617 4.88960 5.00217 5.01968 5.13018 5.30746 5.37671 5.42268 5.69527 5.74687 5.79556 5.84431 5.87294 6.02377 6.04112 6.11172 6.30088 6.36785 6.48611 6.58384 6.64612 6.79155 6.82746 6.88189 6.93083 6.99231 7.18399 7.42607 7.59927 7.79277 7.94007 8.23437 8.28373 8.84714 9.14937 9.77010 10.54759 11.38486 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.020354 B = 0.004459 C = 0.004150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.346955 B = 6278.183625 C = 6746.088418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.498 5.498 3 C 0.143 3.857 4 C -0.235 4.235 5 C 0.031 3.969 6 C -0.244 4.244 7 C 0.569 3.431 8 O -0.562 6.562 9 N -0.571 5.571 10 C 0.112 3.888 11 C 0.168 3.832 12 H 0.119 0.881 13 C -0.135 4.135 14 C -0.120 4.120 15 C 0.126 3.874 16 H 0.074 0.926 17 C 0.116 3.884 18 N -0.584 5.584 19 C -0.224 4.224 20 H 0.076 0.924 21 C -0.004 4.004 22 N -0.913 5.913 23 Si 0.912 3.088 24 H -0.289 1.289 25 H -0.282 1.282 26 H -0.291 1.291 27 C 0.519 3.481 28 O -0.521 6.521 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.096 0.904 32 H 0.163 0.837 33 H 0.150 0.850 34 H 0.141 0.859 35 H 0.067 0.933 36 H 0.080 0.920 37 H 0.054 0.946 38 H 0.052 0.948 39 H 0.048 0.952 40 H 0.053 0.947 41 H 0.059 0.941 42 H 0.072 0.928 43 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.822 21.370 -2.263 22.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.208 5.208 3 C 0.014 3.986 4 C -0.258 4.258 5 C 0.008 3.992 6 C -0.252 4.252 7 C 0.356 3.644 8 O -0.444 6.444 9 N -0.300 5.300 10 C -0.011 4.011 11 C 0.060 3.940 12 H 0.136 0.864 13 C -0.174 4.174 14 C -0.160 4.160 15 C 0.017 3.983 16 H 0.092 0.908 17 C -0.009 4.009 18 N -0.305 5.305 19 C -0.352 4.352 20 H 0.094 0.906 21 C -0.201 4.201 22 N -0.559 5.559 23 Si 0.743 3.257 24 H -0.217 1.217 25 H -0.207 1.207 26 H -0.218 1.218 27 C 0.320 3.680 28 O -0.401 6.401 29 H 0.097 0.903 30 H 0.103 0.897 31 H 0.115 0.885 32 H 0.181 0.819 33 H 0.168 0.832 34 H 0.159 0.841 35 H 0.085 0.915 36 H 0.099 0.901 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.067 0.933 40 H 0.072 0.928 41 H 0.077 0.923 42 H 0.090 0.910 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -4.849 20.204 -2.646 20.946 hybrid contribution -0.477 -0.574 0.292 0.801 sum -5.326 19.630 -2.355 20.476 Atomic orbital electron populations 1.22207 0.76949 1.05089 1.04163 1.45445 1.09421 1.06801 1.59115 1.22061 0.94105 0.89367 0.93087 1.20583 0.92331 0.99457 1.13442 1.21827 1.01067 0.90396 0.85927 1.21141 0.92586 0.96019 1.15416 1.17416 0.83129 0.82773 0.81098 1.90743 1.32586 1.81184 1.39882 1.48053 1.27868 1.17854 1.36213 1.22475 0.94402 0.84308 0.99899 1.21895 0.88204 0.95447 0.88420 0.86361 1.22708 0.96805 0.98352 0.99530 1.22520 0.96670 0.97425 0.99340 1.22293 0.94887 0.87291 0.93804 0.90824 1.22807 0.87058 0.99977 0.91082 1.45185 1.16118 1.00508 1.68711 1.19004 1.12764 0.82643 1.20806 0.90640 1.24829 1.00003 0.97485 0.97771 1.69837 1.33547 1.23328 1.29237 0.86124 0.78281 0.82983 0.78358 1.21665 1.20738 1.21765 1.16974 0.88348 0.82908 0.79786 1.91051 1.69301 1.28722 1.50980 0.90307 0.89698 0.88512 0.81933 0.83241 0.84113 0.91452 0.90143 0.92760 0.92970 0.93299 0.92775 0.92282 0.90999 0.93532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.41 10.35 59.85 0.62 1.03 16 2 N -0.50 -5.17 2.98 -126.77 -0.38 -5.55 16 3 C 0.14 0.99 10.25 -16.85 -0.17 0.82 16 4 C -0.23 -1.84 9.99 -40.01 -0.40 -2.24 16 5 C 0.03 0.37 9.84 -38.71 -0.38 -0.01 16 6 C -0.24 -4.05 5.10 -104.51 -0.53 -4.59 16 7 C 0.57 12.02 7.03 -12.68 -0.09 11.93 16 8 O -0.56 -13.27 16.53 5.23 0.09 -13.18 16 9 N -0.57 -12.63 2.27 -172.38 -0.39 -13.02 16 10 C 0.11 2.71 5.80 -3.22 -0.02 2.70 16 11 C 0.17 4.05 3.09 -65.65 -0.20 3.84 16 12 H 0.12 3.18 6.35 -51.93 -0.33 2.85 16 13 C -0.13 -2.74 6.23 -24.96 -0.16 -2.90 16 14 C -0.12 -2.26 6.24 -24.95 -0.16 -2.42 16 15 C 0.13 2.68 4.32 -65.20 -0.28 2.39 16 16 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 17 C 0.12 2.44 3.96 -2.76 -0.01 2.43 16 18 N -0.58 -14.74 2.80 -152.07 -0.43 -15.16 16 19 C -0.22 -6.15 10.37 -15.06 -0.16 -6.30 16 20 H 0.08 2.02 7.85 -52.49 -0.41 1.61 16 21 C 0.00 -0.11 5.42 -17.43 -0.09 -0.20 16 22 N -0.91 -26.21 10.35 55.49 0.57 -25.63 16 23 Si 0.91 22.04 29.56 -169.99 -5.03 17.01 16 24 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 25 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 26 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 27 C 0.52 8.17 5.89 -14.92 -0.09 8.08 16 28 O -0.52 -10.07 12.56 5.01 0.06 -10.01 16 29 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.08 0.29 8.00 -51.93 -0.42 -0.12 16 31 H 0.10 0.89 7.38 -51.93 -0.38 0.51 16 32 H 0.16 0.35 8.01 -52.49 -0.42 -0.07 16 33 H 0.15 0.67 8.06 -52.48 -0.42 0.24 16 34 H 0.14 1.59 8.06 -52.49 -0.42 1.17 16 35 H 0.07 1.62 7.16 -51.93 -0.37 1.24 16 36 H 0.08 2.22 7.78 -51.93 -0.40 1.82 16 37 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.05 1.03 7.86 -51.93 -0.41 0.62 16 39 H 0.05 0.84 7.87 -51.93 -0.41 0.44 16 40 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 41 H 0.06 1.13 4.51 -51.93 -0.23 0.89 16 42 H 0.07 1.74 7.57 -51.93 -0.39 1.35 16 43 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 339.58 15.07 5.12 5.12 Total: -1.00 -35.45 339.58 -8.35 -43.80 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -5.85 Total: 2.04 kcal Atomic # 6 Polarization: 16.69 SS G_CDS: -2.12 Total: 14.57 kcal Atomic # 7 Polarization: -58.74 SS G_CDS: -0.62 Total: -59.36 kcal Atomic # 8 Polarization: -23.34 SS G_CDS: 0.15 Total: -23.19 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.03 Total: 17.01 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -35.45 -8.35 -43.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029557152.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.187 kcal (2) G-P(sol) polarization free energy of solvation -35.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.804 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds