Wall clock time and date at job start Tue Mar 31 2020 11:13:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.35444 * 119.46925 * 2 1 4 4 C 1.35753 * 121.22949 * 179.97438 * 3 2 1 5 5 C 1.39475 * 120.13399 * 359.79194 * 4 3 2 6 6 C 1.39340 * 118.95499 * 0.45762 * 5 4 3 7 7 C 1.47077 * 120.58279 * 179.80045 * 6 5 4 8 8 O 1.21650 * 120.00278 * 311.50823 * 7 6 5 9 9 N 1.34778 * 120.00103 * 131.50687 * 7 6 5 10 10 C 1.47164 * 120.71197 * 185.48939 * 9 7 6 11 11 C 1.53891 * 108.02963 * 132.73520 * 10 9 7 12 12 H 1.09000 * 112.09367 * 181.90372 * 11 10 9 13 13 C 1.54541 * 108.37070 * 306.25509 * 11 10 9 14 14 C 1.54831 * 104.74525 * 89.17144 * 13 11 10 15 15 C 1.54551 * 104.74318 * 0.02562 * 14 13 11 16 16 H 1.08999 * 112.68221 * 146.81013 * 15 14 13 17 17 C 1.47161 * 120.70466 * 5.47178 * 9 7 6 18 18 N 1.48306 * 104.35519 * 24.82171 * 15 14 13 19 19 C 1.36944 * 128.07217 * 139.08561 * 18 15 14 20 20 H 1.07998 * 119.99847 * 344.76657 * 19 18 15 21 21 C 1.38812 * 119.99951 * 164.77269 * 19 18 15 22 22 N 1.31615 * 120.00053 * 350.73403 * 21 19 18 23 23 Si 1.86801 * 119.99995 * 170.73307 * 21 19 18 24 24 H 1.48504 * 109.46960 * 270.00052 * 23 21 19 25 25 H 1.48500 * 109.47043 * 29.99426 * 23 21 19 26 26 H 1.48493 * 109.47351 * 149.99965 * 23 21 19 27 27 C 1.34649 * 119.47906 * 180.02562 * 2 1 3 28 28 O 1.21895 * 120.09891 * 359.95216 * 27 2 1 29 29 H 1.08997 * 109.46997 * 269.97687 * 1 2 3 30 30 H 1.08998 * 109.47148 * 29.98144 * 1 2 3 31 31 H 1.09006 * 109.46962 * 149.97573 * 1 2 3 32 32 H 1.07995 * 119.38395 * 0.02747 * 3 2 1 33 33 H 1.08008 * 119.93222 * 180.02562 * 4 3 2 34 34 H 1.08000 * 120.52105 * 180.24160 * 5 4 3 35 35 H 1.09002 * 109.74951 * 13.11119 * 10 9 7 36 36 H 1.08994 * 109.79387 * 252.39803 * 10 9 7 37 37 H 1.09004 * 110.36376 * 208.14102 * 13 11 10 38 38 H 1.08994 * 110.36542 * 330.45319 * 13 11 10 39 39 H 1.08999 * 110.30327 * 241.24782 * 14 13 11 40 40 H 1.09001 * 110.61274 * 118.90973 * 14 13 11 41 41 H 1.08992 * 109.75603 * 346.89528 * 17 9 7 42 42 H 1.09001 * 109.74967 * 107.58111 * 17 9 7 43 43 H 0.96996 * 120.00369 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1313 1.1792 0.0000 4 6 3.4882 1.2209 0.0005 5 6 4.2251 0.0367 0.0054 6 6 3.5464 -1.1802 0.0001 7 6 4.2877 -2.4505 0.0006 8 8 5.2007 -2.6223 -0.7848 9 7 3.9556 -3.4242 0.8712 10 6 4.7606 -4.6524 0.9682 11 6 5.0283 -4.9300 2.4580 12 1 5.6512 -5.8123 2.6051 13 6 5.6534 -3.6633 3.0848 14 6 4.4444 -2.8239 3.5656 15 6 3.2051 -3.6646 3.1836 16 1 2.3860 -3.5526 3.8939 17 6 2.7805 -3.2817 1.7456 18 7 3.7097 -5.0579 3.1252 19 6 3.0982 -6.1972 3.5762 20 1 2.2581 -6.1279 4.2514 21 6 3.5581 -7.4409 3.1657 22 7 4.4567 -7.5269 2.2080 23 14 2.9015 -8.9924 3.9726 24 1 3.7504 -9.3402 5.1404 25 1 1.5063 -8.7622 4.4260 26 1 2.9260 -10.1082 2.9931 27 6 2.1276 -1.1722 -0.0005 28 8 1.5103 -2.2233 -0.0001 29 1 -0.3633 -0.0004 1.0276 30 1 -0.3633 0.8901 -0.5135 31 1 -0.3633 -0.8898 -0.5142 32 1 1.5727 2.1035 0.0005 33 1 3.9981 2.1730 0.0009 34 1 5.3048 0.0626 0.0098 35 1 5.7061 -4.5154 0.4434 36 1 4.2139 -5.4875 0.5303 37 1 6.2911 -3.9319 3.9270 38 1 6.2234 -3.1118 2.3372 39 1 4.4237 -1.8623 3.0528 40 1 4.4844 -2.6767 4.6449 41 1 2.4319 -2.2492 1.7288 42 1 1.9852 -3.9445 1.4046 43 1 4.7778 -8.3960 1.9208 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001029557152.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:49 Heat of formation + Delta-G solvation = 1.845555 kcal Electronic energy + Delta-G solvation = -28311.977446 eV Core-core repulsion = 24551.597411 eV Total energy + Delta-G solvation = -3760.380034 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.66340 -41.16653 -39.26941 -38.18022 -35.54638 -35.23330 -34.13626 -32.28782 -31.20205 -30.91924 -28.57600 -27.96464 -26.18881 -25.52338 -24.73766 -23.63134 -21.73918 -21.27084 -20.43149 -19.26180 -18.42801 -18.24665 -17.70271 -17.26283 -16.94484 -16.70283 -16.46201 -16.29535 -15.59196 -15.39814 -15.07543 -14.71414 -14.54351 -14.43729 -14.14515 -13.58093 -13.55658 -13.46472 -13.24694 -13.23422 -12.98517 -12.88440 -12.75657 -12.70558 -12.44375 -12.00011 -11.85513 -11.55793 -11.50579 -11.31347 -11.12872 -10.94379 -10.81317 -10.66525 -9.72911 -8.98002 -8.70788 -7.86095 -5.22627 -0.39705 0.87308 1.46128 1.47156 1.49371 1.56204 1.82612 2.19268 2.49663 2.65472 3.32417 3.45936 3.58319 3.71493 3.90641 4.03206 4.05316 4.13278 4.21226 4.23295 4.30121 4.40058 4.43664 4.48745 4.58128 4.69250 4.84645 4.87469 4.91820 4.95334 4.99817 5.02078 5.06435 5.17788 5.25818 5.30458 5.39122 5.50172 5.54677 5.60603 5.81919 5.98792 6.20911 6.61500 6.93136 7.03700 7.20504 7.70357 8.50300 9.25728 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.020354 B = 0.004459 C = 0.004150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.346955 B = 6278.183625 C = 6746.088418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.051 3.949 2 N -0.491 5.491 3 C 0.179 3.821 4 C -0.238 4.238 5 C 0.062 3.938 6 C -0.316 4.316 7 C 0.567 3.433 8 O -0.602 6.602 9 N -0.579 5.579 10 C 0.126 3.874 11 C 0.168 3.832 12 H 0.084 0.916 13 C -0.124 4.124 14 C -0.104 4.104 15 C 0.119 3.881 16 H 0.086 0.914 17 C 0.137 3.863 18 N -0.604 5.604 19 C -0.235 4.235 20 H 0.081 0.919 21 C -0.059 4.059 22 N -0.941 5.941 23 Si 0.977 3.023 24 H -0.284 1.284 25 H -0.271 1.271 26 H -0.300 1.300 27 C 0.510 3.490 28 O -0.581 6.581 29 H 0.091 0.909 30 H 0.137 0.863 31 H 0.066 0.934 32 H 0.232 0.768 33 H 0.199 0.801 34 H 0.144 0.856 35 H 0.059 0.941 36 H 0.030 0.970 37 H 0.064 0.936 38 H 0.056 0.944 39 H 0.070 0.930 40 H 0.076 0.924 41 H 0.087 0.913 42 H 0.027 0.973 43 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.161 26.912 -1.042 27.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 N -0.198 5.198 3 C 0.050 3.950 4 C -0.259 4.259 5 C 0.038 3.962 6 C -0.323 4.323 7 C 0.357 3.643 8 O -0.487 6.487 9 N -0.308 5.308 10 C 0.001 3.999 11 C 0.060 3.940 12 H 0.101 0.899 13 C -0.163 4.163 14 C -0.143 4.143 15 C 0.011 3.989 16 H 0.104 0.896 17 C 0.012 3.988 18 N -0.325 5.325 19 C -0.364 4.364 20 H 0.098 0.902 21 C -0.253 4.253 22 N -0.589 5.589 23 Si 0.806 3.194 24 H -0.211 1.211 25 H -0.196 1.196 26 H -0.227 1.227 27 C 0.313 3.687 28 O -0.467 6.467 29 H 0.109 0.891 30 H 0.155 0.845 31 H 0.085 0.915 32 H 0.249 0.751 33 H 0.216 0.784 34 H 0.162 0.838 35 H 0.077 0.923 36 H 0.048 0.952 37 H 0.082 0.918 38 H 0.075 0.925 39 H 0.089 0.911 40 H 0.095 0.905 41 H 0.104 0.896 42 H 0.045 0.955 43 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -6.220 25.833 -1.409 26.609 hybrid contribution -0.135 -2.019 -0.211 2.034 sum -6.354 23.814 -1.620 24.701 Atomic orbital electron populations 1.22513 0.74748 1.06230 1.05387 1.45551 1.10926 1.06469 1.56881 1.23256 0.94470 0.89862 0.87437 1.21134 0.92779 0.99352 1.12677 1.22176 1.01693 0.90367 0.81961 1.20645 0.93193 0.94780 1.23657 1.18203 0.82670 0.84004 0.79385 1.90684 1.34729 1.82301 1.40948 1.48055 1.27981 1.17483 1.37274 1.22019 0.93563 0.84307 0.99972 1.21732 0.87955 0.96026 0.88298 0.89863 1.22573 0.97530 0.96561 0.99636 1.22416 0.93789 0.97238 1.00865 1.22574 0.96541 0.85671 0.94077 0.89592 1.22548 0.85418 1.00389 0.90447 1.45399 1.16822 1.01648 1.68675 1.19356 1.12728 0.83765 1.20531 0.90175 1.25627 1.00752 1.00371 0.98557 1.70060 1.34938 1.23203 1.30655 0.85100 0.78159 0.79025 0.77117 1.21106 1.19568 1.22681 1.16911 0.88118 0.83847 0.79828 1.91025 1.70193 1.31070 1.54414 0.89063 0.84478 0.91464 0.75150 0.78445 0.83777 0.92283 0.95189 0.91754 0.92479 0.91142 0.90492 0.89551 0.95475 0.94372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.53 10.35 127.77 1.32 1.86 16 2 N -0.49 -8.23 2.98 -673.20 -2.00 -10.23 16 3 C 0.18 1.18 10.25 83.56 0.86 2.04 16 4 C -0.24 -2.18 9.99 21.99 0.22 -1.96 16 5 C 0.06 1.30 9.84 22.83 0.22 1.53 16 6 C -0.32 -10.34 5.10 -19.79 -0.10 -10.44 16 7 C 0.57 25.14 7.03 86.56 0.61 25.74 16 8 O -0.60 -30.13 16.53 -4.19 -0.07 -30.20 16 9 N -0.58 -27.26 2.27 -817.54 -1.86 -29.12 16 10 C 0.13 6.66 5.80 86.55 0.50 7.16 16 11 C 0.17 8.56 3.09 45.46 0.14 8.70 16 12 H 0.08 4.82 6.35 -2.39 -0.02 4.81 16 13 C -0.12 -5.07 6.23 31.74 0.20 -4.87 16 14 C -0.10 -3.75 6.24 31.75 0.20 -3.55 16 15 C 0.12 5.10 4.32 45.77 0.20 5.30 16 16 H 0.09 3.44 8.14 -2.39 -0.02 3.42 16 17 C 0.14 6.04 3.96 86.85 0.34 6.38 16 18 N -0.60 -31.74 2.80 -635.03 -1.78 -33.52 16 19 C -0.24 -13.38 10.37 84.03 0.87 -12.51 16 20 H 0.08 4.37 7.85 -2.91 -0.02 4.35 16 21 C -0.06 -3.43 5.42 84.86 0.46 -2.97 16 22 N -0.94 -57.66 10.35 21.65 0.22 -57.44 16 23 Si 0.98 47.02 29.56 68.60 2.03 49.05 16 24 H -0.28 -13.33 7.11 99.48 0.71 -12.63 16 25 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 26 H -0.30 -14.72 7.11 99.48 0.71 -14.01 16 27 C 0.51 15.73 5.89 85.16 0.50 16.23 16 28 O -0.58 -23.65 12.56 -4.97 -0.06 -23.71 16 29 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.14 0.02 8.00 -2.39 -0.02 0.00 16 31 H 0.07 1.17 7.38 -2.38 -0.02 1.16 16 32 H 0.23 -1.46 8.01 -2.91 -0.02 -1.49 16 33 H 0.20 0.05 8.06 -2.91 -0.02 0.03 16 34 H 0.14 2.88 8.06 -2.91 -0.02 2.86 16 35 H 0.06 3.12 7.16 -2.39 -0.02 3.10 16 36 H 0.03 1.84 7.78 -2.39 -0.02 1.82 16 37 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 38 H 0.06 2.26 7.86 -2.39 -0.02 2.24 16 39 H 0.07 2.25 7.87 -2.39 -0.02 2.23 16 40 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 41 H 0.09 3.36 4.51 -2.39 -0.01 3.34 16 42 H 0.03 1.42 7.57 -2.39 -0.02 1.40 16 43 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 Total: -1.00 -89.92 339.58 4.05 -85.87 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: 1.03 Total: 10.66 kcal Atomic # 6 Polarization: 32.09 SS G_CDS: 6.54 Total: 38.64 kcal Atomic # 7 Polarization: -124.89 SS G_CDS: -5.41 Total: -130.31 kcal Atomic # 8 Polarization: -53.77 SS G_CDS: -0.13 Total: -53.91 kcal Atomic # 14 Polarization: 47.02 SS G_CDS: 2.03 Total: 49.05 kcal Total: -89.92 4.05 -85.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029557152.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.713 kcal (2) G-P(sol) polarization free energy of solvation -89.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.867 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds