Wall clock time and date at job start Tue Mar 31 2020 11:41:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35640 * 117.00208 * 2 1 4 4 C 1.39345 * 120.54140 * 359.96774 * 3 2 1 5 5 C 1.38299 * 118.43866 * 180.02562 * 4 3 2 6 6 C 1.38765 * 119.45003 * 0.02562 * 5 4 3 7 7 N 1.31382 * 121.06076 * 359.73775 * 6 5 4 8 8 C 1.32855 * 121.69569 * 0.53056 * 7 6 5 9 9 C 1.47828 * 119.77759 * 179.74641 * 8 7 6 10 10 O 1.21558 * 120.00004 * 171.61924 * 9 8 7 11 11 N 1.34777 * 120.00742 * 351.62605 * 9 8 7 12 12 C 1.48423 * 120.83977 * 177.48116 * 11 9 8 13 13 C 1.53893 * 107.37919 * 132.53105 * 12 11 9 14 14 H 1.09000 * 112.09807 * 182.51506 * 13 12 11 15 15 C 1.54546 * 108.36975 * 306.86118 * 13 12 11 16 16 C 1.54276 * 104.84978 * 89.29608 * 15 13 12 17 17 C 1.54550 * 104.85170 * 0.02562 * 16 15 13 18 18 H 1.09002 * 112.68249 * 146.68462 * 17 16 15 19 19 C 1.47171 * 120.70470 * 357.85727 * 11 9 8 20 20 N 1.48307 * 107.20606 * 58.96856 * 13 12 11 21 21 C 1.36936 * 128.07623 * 106.11557 * 20 13 12 22 22 H 1.07998 * 120.00028 * 15.12470 * 21 20 13 23 23 C 1.38814 * 119.99853 * 195.11637 * 21 20 13 24 24 N 1.31622 * 119.99999 * 10.23819 * 23 21 20 25 25 Si 1.86799 * 119.99922 * 190.23732 * 23 21 20 26 26 H 1.48498 * 109.47526 * 59.99988 * 25 23 21 27 27 H 1.48499 * 109.47162 * 180.02562 * 25 23 21 28 28 H 1.48506 * 109.47111 * 299.99884 * 25 23 21 29 29 H 1.08999 * 109.46783 * 60.00549 * 1 2 3 30 30 H 1.09000 * 109.47013 * 180.02562 * 1 2 3 31 31 H 1.08990 * 109.47467 * 300.00346 * 1 2 3 32 32 H 1.08002 * 120.77562 * 0.02562 * 4 3 2 33 33 H 1.08008 * 120.27447 * 179.97438 * 5 4 3 34 34 H 1.07995 * 119.46956 * 180.02562 * 6 5 4 35 35 H 1.09006 * 109.56926 * 13.38882 * 12 11 9 36 36 H 1.09002 * 110.57491 * 252.24745 * 12 11 9 37 37 H 1.08998 * 110.36561 * 208.14467 * 15 13 12 38 38 H 1.09001 * 110.35909 * 330.45762 * 15 13 12 39 39 H 1.09001 * 110.36991 * 241.15658 * 16 15 13 40 40 H 1.09002 * 110.45447 * 118.89198 * 16 15 13 41 41 H 1.09005 * 109.74639 * 107.60981 * 19 11 9 42 42 H 1.09002 * 109.74943 * 346.88382 * 19 11 9 43 43 H 0.97005 * 119.99759 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2085 0.0000 4 6 1.2970 2.3843 -0.0007 5 6 1.9697 3.5927 -0.0012 6 6 3.3574 3.6011 -0.0016 7 7 4.0420 2.4797 0.0037 8 6 3.4410 1.2949 -0.0009 9 6 4.2532 0.0597 -0.0003 10 8 3.7163 -1.0206 0.1490 11 7 5.5889 0.1312 -0.1651 12 6 6.4286 -1.0915 -0.1122 13 6 7.3746 -1.0523 -1.3254 14 1 8.0006 -1.9425 -1.3862 15 6 6.5243 -0.8487 -2.5998 16 6 6.4217 0.6816 -2.7663 17 6 7.2199 1.2639 -1.5778 18 1 7.7232 2.1981 -1.8269 19 6 6.2496 1.4263 -0.3938 20 7 8.1768 0.1904 -1.2162 21 6 9.4941 0.3169 -0.8643 22 1 10.1383 -0.5499 -0.8626 23 6 10.0015 1.5595 -0.5099 24 7 9.1845 2.5730 -0.3159 25 14 11.8439 1.7931 -0.3084 26 1 12.5258 1.4793 -1.5897 27 1 12.1257 3.2008 0.0711 28 1 12.3447 0.8847 0.7543 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 0.2175 2.3527 -0.0008 33 1 1.4196 4.5222 -0.0021 34 1 3.8830 4.5445 -0.0015 35 1 5.7920 -1.9744 -0.1701 36 1 7.0113 -1.1165 0.8086 37 1 7.0218 -1.2916 -3.4625 38 1 5.5334 -1.2831 -2.4678 39 1 5.3803 0.9997 -2.7164 40 1 6.8676 0.9928 -3.7110 41 1 6.8030 1.7199 0.4982 42 1 5.5027 2.1840 -0.6308 43 1 9.5391 3.4414 -0.0686 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001029564354.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:44 Heat of formation + Delta-G solvation = 35.297069 kcal Electronic energy + Delta-G solvation = -28047.123109 eV Core-core repulsion = 24288.193641 eV Total energy + Delta-G solvation = -3758.929468 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.95894 -39.41148 -38.17601 -37.40875 -33.60251 -32.62413 -31.98703 -30.83020 -30.23559 -29.11400 -27.58533 -26.29288 -24.49804 -23.67204 -23.14645 -22.78391 -20.29203 -19.50781 -18.74137 -18.01722 -17.48261 -16.93953 -16.03847 -15.88648 -15.39719 -15.15907 -14.92991 -14.51754 -14.29998 -13.95670 -13.87176 -13.56189 -13.08260 -12.97938 -12.78662 -12.51357 -12.37476 -11.73068 -11.66385 -11.59484 -11.48861 -11.32604 -10.99680 -10.82496 -10.67991 -10.26866 -10.06630 -9.89663 -9.77540 -9.60776 -9.41740 -9.38329 -8.95103 -8.48315 -8.30684 -7.77999 -6.67428 -5.73956 -3.07571 0.74079 1.18379 3.08579 3.15300 3.41878 3.46868 3.47433 3.61185 4.04169 4.39487 4.50750 4.50853 4.65451 4.88123 4.95873 4.98280 5.16351 5.29767 5.34226 5.42587 5.46773 5.77212 5.82981 5.86902 5.88556 5.93235 6.13221 6.25224 6.25798 6.41892 6.52906 6.60324 6.68949 6.79870 6.92328 6.99553 7.05667 7.13818 7.45289 7.53785 7.60591 7.78217 7.84793 8.25511 8.31469 8.84864 9.16604 9.78406 10.57485 11.38850 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.020296 B = 0.004397 C = 0.003908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.276600 B = 6366.656684 C = 7163.938318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.272 6.272 3 C 0.129 3.871 4 C -0.178 4.178 5 C -0.115 4.115 6 C 0.051 3.949 7 N -0.396 5.396 8 C 0.058 3.942 9 C 0.557 3.443 10 O -0.546 6.546 11 N -0.570 5.570 12 C 0.102 3.898 13 C 0.134 3.866 14 H 0.075 0.925 15 C -0.123 4.123 16 C -0.134 4.134 17 C 0.166 3.834 18 H 0.116 0.884 19 C 0.070 3.930 20 N -0.587 5.587 21 C -0.224 4.224 22 H 0.074 0.926 23 C -0.003 4.003 24 N -0.911 5.911 25 Si 0.910 3.090 26 H -0.286 1.286 27 H -0.291 1.291 28 H -0.286 1.286 29 H 0.054 0.946 30 H 0.103 0.897 31 H 0.054 0.946 32 H 0.142 0.858 33 H 0.139 0.861 34 H 0.166 0.834 35 H 0.073 0.927 36 H 0.065 0.935 37 H 0.053 0.947 38 H 0.054 0.946 39 H 0.046 0.954 40 H 0.050 0.950 41 H 0.075 0.925 42 H 0.130 0.870 43 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.393 1.905 -0.979 17.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.181 6.181 3 C 0.079 3.921 4 C -0.204 4.204 5 C -0.135 4.135 6 C -0.108 4.108 7 N -0.108 5.108 8 C -0.081 4.081 9 C 0.343 3.657 10 O -0.425 6.425 11 N -0.300 5.300 12 C -0.022 4.022 13 C 0.026 3.974 14 H 0.093 0.907 15 C -0.162 4.162 16 C -0.173 4.173 17 C 0.059 3.941 18 H 0.133 0.867 19 C -0.053 4.053 20 N -0.308 5.308 21 C -0.353 4.353 22 H 0.092 0.908 23 C -0.200 4.200 24 N -0.557 5.557 25 Si 0.740 3.260 26 H -0.213 1.213 27 H -0.217 1.217 28 H -0.212 1.212 29 H 0.073 0.927 30 H 0.121 0.879 31 H 0.073 0.927 32 H 0.160 0.840 33 H 0.157 0.843 34 H 0.183 0.817 35 H 0.091 0.909 36 H 0.083 0.917 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.065 0.935 40 H 0.069 0.931 41 H 0.094 0.906 42 H 0.146 0.854 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -16.447 1.292 -0.801 16.517 hybrid contribution -0.196 0.479 0.229 0.566 sum -16.644 1.770 -0.571 16.747 Atomic orbital electron populations 1.23173 0.79045 1.04408 1.00950 1.86441 1.20436 1.24643 1.86625 1.20028 0.92324 0.85604 0.94161 1.21693 1.00773 0.91922 1.06052 1.22148 0.95790 0.98178 0.97354 1.23017 0.91383 0.97236 0.99135 1.68131 1.36716 0.97547 1.08368 1.21009 0.88526 0.93302 1.05232 1.17627 0.82337 0.86838 0.78894 1.90749 1.71625 1.27943 1.52188 1.48443 1.04712 1.10407 1.66471 1.22614 0.92855 0.86450 1.00308 1.21944 0.91331 0.92159 0.91989 0.90675 1.22452 0.98828 0.96807 0.98098 1.22602 0.98988 0.95650 1.00058 1.21966 0.87971 0.94661 0.89545 0.86676 1.23805 0.97185 0.83165 1.01143 1.45200 1.07010 1.00302 1.78272 1.18952 0.83121 0.94649 1.38539 0.90829 1.24802 0.97782 0.96706 1.00740 1.69859 1.32498 1.01307 1.52033 0.86245 0.85140 0.76774 0.77815 1.21310 1.21673 1.21228 0.92723 0.87861 0.92721 0.83995 0.84279 0.81697 0.90867 0.91704 0.92863 0.92766 0.93485 0.93106 0.90625 0.85378 0.93634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.83 101.05 0.99 1.17 16 2 O -0.27 -4.09 8.60 -40.42 -0.35 -4.43 16 3 C 0.13 1.93 6.70 -38.56 -0.26 1.67 16 4 C -0.18 -1.91 9.13 -39.15 -0.36 -2.27 16 5 C -0.11 -1.12 10.10 -39.36 -0.40 -1.52 16 6 C 0.05 0.63 11.17 -17.55 -0.20 0.44 16 7 N -0.40 -6.55 5.99 -9.71 -0.06 -6.61 16 8 C 0.06 1.03 6.64 -82.89 -0.55 0.48 16 9 C 0.56 11.60 7.68 -12.34 -0.09 11.50 16 10 O -0.55 -12.28 14.67 -16.48 -0.24 -12.52 16 11 N -0.57 -12.16 2.26 -171.57 -0.39 -12.55 16 12 C 0.10 2.15 6.03 -2.52 -0.02 2.14 16 13 C 0.13 2.87 4.27 -65.66 -0.28 2.59 16 14 H 0.08 1.53 8.14 -51.93 -0.42 1.10 16 15 C -0.12 -2.41 6.19 -25.25 -0.16 -2.57 16 16 C -0.13 -2.73 6.18 -25.25 -0.16 -2.88 16 17 C 0.17 3.87 3.14 -65.64 -0.21 3.66 16 18 H 0.12 3.00 6.37 -51.93 -0.33 2.67 16 19 C 0.07 1.55 5.27 -3.19 -0.02 1.53 16 20 N -0.59 -14.58 2.80 -152.58 -0.43 -15.01 16 21 C -0.22 -6.07 10.37 -15.06 -0.16 -6.22 16 22 H 0.07 1.94 7.85 -52.49 -0.41 1.53 16 23 C 0.00 -0.09 5.41 -17.43 -0.09 -0.18 16 24 N -0.91 -25.23 10.41 55.49 0.58 -24.65 16 25 Si 0.91 21.60 29.57 -169.99 -5.03 16.58 16 26 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 27 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 28 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 29 H 0.05 0.39 7.70 -51.93 -0.40 -0.01 16 30 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.05 0.39 7.70 -51.93 -0.40 -0.01 16 32 H 0.14 1.05 6.46 -52.49 -0.34 0.71 16 33 H 0.14 0.84 8.06 -52.48 -0.42 0.42 16 34 H 0.17 1.60 8.06 -52.49 -0.42 1.18 16 35 H 0.07 1.48 7.12 -51.93 -0.37 1.11 16 36 H 0.06 1.44 8.14 -51.93 -0.42 1.01 16 37 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.05 1.05 7.86 -51.93 -0.41 0.64 16 39 H 0.05 0.92 7.84 -51.93 -0.41 0.51 16 40 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.08 1.94 7.79 -51.93 -0.40 1.53 16 42 H 0.13 2.64 3.99 -89.11 -0.36 2.28 16 43 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 LS Contribution 339.55 15.07 5.12 5.12 Total: -1.00 -32.48 339.55 -8.66 -41.14 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -5.92 Total: 3.40 kcal Atomic # 6 Polarization: 11.49 SS G_CDS: -1.94 Total: 9.54 kcal Atomic # 7 Polarization: -58.53 SS G_CDS: -0.30 Total: -58.82 kcal Atomic # 8 Polarization: -16.36 SS G_CDS: -0.59 Total: -16.95 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.03 Total: 16.58 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.48 -8.66 -41.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029564354.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.434 kcal (2) G-P(sol) polarization free energy of solvation -32.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds