Wall clock time and date at job start Tue Mar 31 2020 11:41:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35640 * 117.00208 * 2 1 4 4 C 1.39345 * 120.54140 * 359.96774 * 3 2 1 5 5 C 1.38299 * 118.43866 * 180.02562 * 4 3 2 6 6 C 1.38765 * 119.45003 * 0.02562 * 5 4 3 7 7 N 1.31382 * 121.06076 * 359.73775 * 6 5 4 8 8 C 1.32855 * 121.69569 * 0.53056 * 7 6 5 9 9 C 1.47828 * 119.77759 * 179.74641 * 8 7 6 10 10 O 1.21558 * 120.00004 * 171.61924 * 9 8 7 11 11 N 1.34777 * 120.00742 * 351.62605 * 9 8 7 12 12 C 1.48423 * 120.83977 * 177.48116 * 11 9 8 13 13 C 1.53893 * 107.37919 * 132.53105 * 12 11 9 14 14 H 1.09000 * 112.09807 * 182.51506 * 13 12 11 15 15 C 1.54546 * 108.36975 * 306.86118 * 13 12 11 16 16 C 1.54276 * 104.84978 * 89.29608 * 15 13 12 17 17 C 1.54550 * 104.85170 * 0.02562 * 16 15 13 18 18 H 1.09002 * 112.68249 * 146.68462 * 17 16 15 19 19 C 1.47171 * 120.70470 * 357.85727 * 11 9 8 20 20 N 1.48307 * 107.20606 * 58.96856 * 13 12 11 21 21 C 1.36936 * 128.07623 * 106.11557 * 20 13 12 22 22 H 1.07998 * 120.00028 * 15.12470 * 21 20 13 23 23 C 1.38814 * 119.99853 * 195.11637 * 21 20 13 24 24 N 1.31622 * 119.99999 * 10.23819 * 23 21 20 25 25 Si 1.86799 * 119.99922 * 190.23732 * 23 21 20 26 26 H 1.48498 * 109.47526 * 59.99988 * 25 23 21 27 27 H 1.48499 * 109.47162 * 180.02562 * 25 23 21 28 28 H 1.48506 * 109.47111 * 299.99884 * 25 23 21 29 29 H 1.08999 * 109.46783 * 60.00549 * 1 2 3 30 30 H 1.09000 * 109.47013 * 180.02562 * 1 2 3 31 31 H 1.08990 * 109.47467 * 300.00346 * 1 2 3 32 32 H 1.08002 * 120.77562 * 0.02562 * 4 3 2 33 33 H 1.08008 * 120.27447 * 179.97438 * 5 4 3 34 34 H 1.07995 * 119.46956 * 180.02562 * 6 5 4 35 35 H 1.09006 * 109.56926 * 13.38882 * 12 11 9 36 36 H 1.09002 * 110.57491 * 252.24745 * 12 11 9 37 37 H 1.08998 * 110.36561 * 208.14467 * 15 13 12 38 38 H 1.09001 * 110.35909 * 330.45762 * 15 13 12 39 39 H 1.09001 * 110.36991 * 241.15658 * 16 15 13 40 40 H 1.09002 * 110.45447 * 118.89198 * 16 15 13 41 41 H 1.09005 * 109.74639 * 107.60981 * 19 11 9 42 42 H 1.09002 * 109.74943 * 346.88382 * 19 11 9 43 43 H 0.97005 * 119.99759 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2085 0.0000 4 6 1.2970 2.3843 -0.0007 5 6 1.9697 3.5927 -0.0012 6 6 3.3574 3.6011 -0.0016 7 7 4.0420 2.4797 0.0037 8 6 3.4410 1.2949 -0.0009 9 6 4.2532 0.0597 -0.0003 10 8 3.7163 -1.0206 0.1490 11 7 5.5889 0.1312 -0.1651 12 6 6.4286 -1.0915 -0.1122 13 6 7.3746 -1.0523 -1.3254 14 1 8.0006 -1.9425 -1.3862 15 6 6.5243 -0.8487 -2.5998 16 6 6.4217 0.6816 -2.7663 17 6 7.2199 1.2639 -1.5778 18 1 7.7232 2.1981 -1.8269 19 6 6.2496 1.4263 -0.3938 20 7 8.1768 0.1904 -1.2162 21 6 9.4941 0.3169 -0.8643 22 1 10.1383 -0.5499 -0.8626 23 6 10.0015 1.5595 -0.5099 24 7 9.1845 2.5730 -0.3159 25 14 11.8439 1.7931 -0.3084 26 1 12.5258 1.4793 -1.5897 27 1 12.1257 3.2008 0.0711 28 1 12.3447 0.8847 0.7543 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 0.2175 2.3527 -0.0008 33 1 1.4196 4.5222 -0.0021 34 1 3.8830 4.5445 -0.0015 35 1 5.7920 -1.9744 -0.1701 36 1 7.0113 -1.1165 0.8086 37 1 7.0218 -1.2916 -3.4625 38 1 5.5334 -1.2831 -2.4678 39 1 5.3803 0.9997 -2.7164 40 1 6.8676 0.9928 -3.7110 41 1 6.8030 1.7199 0.4982 42 1 5.5027 2.1840 -0.6308 43 1 9.5391 3.4414 -0.0686 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001029564354.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:43 Heat of formation + Delta-G solvation = 15.869476 kcal Electronic energy + Delta-G solvation = -28047.965553 eV Core-core repulsion = 24288.193641 eV Total energy + Delta-G solvation = -3759.771911 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.13711 -40.91848 -39.19477 -39.03838 -35.30310 -34.30790 -33.30728 -32.08972 -31.70008 -31.01072 -28.39750 -27.89786 -26.07013 -25.31937 -24.70913 -23.78919 -21.75024 -21.25699 -20.46007 -19.16701 -18.85872 -18.13536 -17.46614 -17.15107 -16.97475 -16.61817 -16.40159 -15.98945 -15.54665 -15.33838 -15.19344 -14.83304 -14.62732 -14.44652 -14.27634 -14.18673 -13.54656 -13.40244 -13.22458 -13.08334 -12.81513 -12.68957 -12.54893 -12.38215 -12.31484 -12.00647 -11.83630 -11.52500 -11.43549 -11.11335 -11.06613 -10.79297 -10.77092 -9.89500 -9.65463 -9.35690 -8.60276 -7.79532 -5.14853 -0.30418 0.25047 1.50713 1.52283 1.58504 1.83936 2.08265 2.26212 2.54271 2.84458 3.23952 3.37570 3.55140 3.61796 3.78008 4.03116 4.09502 4.11905 4.21277 4.22705 4.33475 4.38780 4.39586 4.46948 4.54566 4.69650 4.73327 4.80165 4.91458 4.93568 5.00935 5.03937 5.10608 5.20550 5.22034 5.35585 5.40505 5.58001 5.67161 5.82905 5.91993 6.27572 6.29868 6.62090 6.82803 7.12417 7.27922 7.76624 8.58129 9.31593 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.020296 B = 0.004397 C = 0.003908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.276600 B = 6366.656684 C = 7163.938318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.309 6.309 3 C 0.126 3.874 4 C -0.165 4.165 5 C -0.084 4.084 6 C 0.044 3.956 7 N -0.434 5.434 8 C 0.007 3.993 9 C 0.554 3.446 10 O -0.572 6.572 11 N -0.579 5.579 12 C 0.105 3.895 13 C 0.131 3.869 14 H 0.084 0.916 15 C -0.111 4.111 16 C -0.123 4.123 17 C 0.163 3.837 18 H 0.084 0.916 19 C 0.090 3.910 20 N -0.606 5.606 21 C -0.241 4.241 22 H 0.074 0.926 23 C -0.051 4.051 24 N -0.930 5.930 25 Si 0.972 3.028 26 H -0.281 1.281 27 H -0.293 1.293 28 H -0.284 1.284 29 H 0.077 0.923 30 H 0.111 0.889 31 H 0.075 0.925 32 H 0.185 0.815 33 H 0.192 0.808 34 H 0.189 0.811 35 H 0.081 0.919 36 H 0.043 0.957 37 H 0.069 0.931 38 H 0.058 0.942 39 H 0.054 0.946 40 H 0.057 0.943 41 H 0.028 0.972 42 H 0.151 0.849 43 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.128 3.285 -1.695 20.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.220 6.220 3 C 0.075 3.925 4 C -0.192 4.192 5 C -0.104 4.104 6 C -0.117 4.117 7 N -0.145 5.145 8 C -0.128 4.128 9 C 0.343 3.657 10 O -0.453 6.453 11 N -0.309 5.309 12 C -0.019 4.019 13 C 0.023 3.977 14 H 0.102 0.898 15 C -0.150 4.150 16 C -0.162 4.162 17 C 0.056 3.944 18 H 0.102 0.898 19 C -0.033 4.033 20 N -0.328 5.328 21 C -0.370 4.370 22 H 0.092 0.908 23 C -0.246 4.246 24 N -0.577 5.577 25 Si 0.801 3.199 26 H -0.208 1.208 27 H -0.219 1.219 28 H -0.210 1.210 29 H 0.096 0.904 30 H 0.129 0.871 31 H 0.094 0.906 32 H 0.202 0.798 33 H 0.209 0.791 34 H 0.206 0.794 35 H 0.099 0.901 36 H 0.061 0.939 37 H 0.088 0.912 38 H 0.077 0.923 39 H 0.073 0.927 40 H 0.076 0.924 41 H 0.047 0.953 42 H 0.166 0.834 43 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -19.209 2.631 -1.524 19.449 hybrid contribution 0.456 0.119 0.518 0.700 sum -18.753 2.749 -1.006 18.980 Atomic orbital electron populations 1.23526 0.76108 1.05829 1.03027 1.86381 1.23612 1.25442 1.86552 1.20151 0.91564 0.87082 0.93726 1.22183 1.02612 0.90420 1.03936 1.22685 0.94640 0.99899 0.93149 1.23560 0.93191 0.96566 0.98345 1.67644 1.38590 0.98376 1.09938 1.20489 0.89624 0.92322 1.10396 1.18194 0.81976 0.88098 0.77445 1.90700 1.71970 1.29403 1.53192 1.48442 1.05272 1.09743 1.67424 1.22471 0.92920 0.87226 0.99305 1.22107 0.91351 0.91363 0.92880 0.89795 1.22345 0.98781 0.96263 0.97570 1.22474 0.98869 0.95982 0.98880 1.21891 0.88039 0.93298 0.91217 0.89793 1.23542 0.97112 0.84244 0.98427 1.45391 1.06934 1.01923 1.78522 1.19246 0.84414 0.94852 1.38474 0.90843 1.25516 1.01466 0.96586 1.01027 1.70046 1.33709 1.01257 1.52683 0.85270 0.80686 0.76242 0.77691 1.20782 1.21949 1.20991 0.90419 0.87076 0.90611 0.79798 0.79123 0.79422 0.90078 0.93894 0.91182 0.92308 0.92698 0.92397 0.95334 0.83372 0.94222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.14 9.83 113.37 1.11 1.25 16 2 O -0.31 -8.92 8.60 -68.70 -0.59 -9.51 16 3 C 0.13 3.53 6.70 22.93 0.15 3.69 16 4 C -0.17 -2.81 9.13 22.55 0.21 -2.60 16 5 C -0.08 -1.22 10.10 22.41 0.23 -0.99 16 6 C 0.04 0.98 11.17 84.89 0.95 1.93 16 7 N -0.43 -14.27 5.99 -184.64 -1.11 -15.37 16 8 C 0.01 0.26 6.64 41.93 0.28 0.54 16 9 C 0.55 23.86 7.68 86.78 0.67 24.53 16 10 O -0.57 -26.53 14.67 16.94 0.25 -26.28 16 11 N -0.58 -25.79 2.26 -814.99 -1.84 -27.63 16 12 C 0.11 4.65 6.03 86.31 0.52 5.17 16 13 C 0.13 5.72 4.27 45.47 0.19 5.91 16 14 H 0.08 3.46 8.14 -2.39 -0.02 3.44 16 15 C -0.11 -4.31 6.19 31.55 0.20 -4.11 16 16 C -0.12 -5.02 6.18 31.55 0.20 -4.83 16 17 C 0.16 7.87 3.14 45.49 0.14 8.01 16 18 H 0.08 4.58 6.37 -2.39 -0.02 4.57 16 19 C 0.09 4.18 5.27 86.57 0.46 4.64 16 20 N -0.61 -31.15 2.80 -636.63 -1.78 -32.93 16 21 C -0.24 -13.43 10.37 84.03 0.87 -12.56 16 22 H 0.07 3.98 7.85 -2.91 -0.02 3.95 16 23 C -0.05 -2.84 5.41 84.86 0.46 -2.39 16 24 N -0.93 -53.55 10.41 21.65 0.23 -53.32 16 25 Si 0.97 45.42 29.57 68.60 2.03 47.45 16 26 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 27 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 28 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 29 H 0.08 0.78 7.70 -2.39 -0.02 0.77 16 30 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.08 0.79 7.70 -2.39 -0.02 0.77 16 32 H 0.18 1.53 6.46 -2.91 -0.02 1.51 16 33 H 0.19 0.88 8.06 -2.91 -0.02 0.85 16 34 H 0.19 3.10 8.06 -2.91 -0.02 3.08 16 35 H 0.08 3.41 7.12 -2.38 -0.02 3.39 16 36 H 0.04 2.03 8.14 -2.39 -0.02 2.01 16 37 H 0.07 2.48 8.14 -2.39 -0.02 2.47 16 38 H 0.06 2.24 7.86 -2.39 -0.02 2.22 16 39 H 0.05 2.14 7.84 -2.39 -0.02 2.12 16 40 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 41 H 0.03 1.56 7.79 -2.38 -0.02 1.54 16 42 H 0.15 6.35 3.99 -75.80 -0.30 6.04 16 43 H 0.25 13.98 8.31 -92.70 -0.77 13.20 16 Total: -1.00 -75.82 339.55 4.55 -71.27 By element: Atomic # 1 Polarization: 17.40 SS G_CDS: 0.74 Total: 18.14 kcal Atomic # 6 Polarization: 21.56 SS G_CDS: 6.63 Total: 28.19 kcal Atomic # 7 Polarization: -124.75 SS G_CDS: -4.51 Total: -129.26 kcal Atomic # 8 Polarization: -35.45 SS G_CDS: -0.34 Total: -35.79 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.45 kcal Total: -75.82 4.55 -71.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029564354.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.141 kcal (2) G-P(sol) polarization free energy of solvation -75.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.272 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds