Wall clock time and date at job start Tue Mar 31 2020 11:28:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46508 * 119.99649 * 2 1 4 4 C 1.34780 * 120.00193 * 179.97438 * 2 1 3 5 5 O 1.21519 * 119.99944 * 3.90953 * 4 2 1 6 6 C 1.48036 * 120.00046 * 183.90495 * 4 2 1 7 7 C 1.39548 * 119.99899 * 133.79598 * 6 4 2 8 8 C 1.37825 * 120.00134 * 180.02562 * 7 6 4 9 9 C 1.39552 * 119.99550 * 359.97438 * 8 7 6 10 10 C 1.48039 * 119.99949 * 180.02562 * 9 8 7 11 11 O 1.21526 * 119.99584 * 359.97438 * 10 9 8 12 12 N 1.34776 * 119.99930 * 180.02562 * 10 9 8 13 13 C 1.46506 * 119.99597 * 179.97438 * 12 10 9 14 14 C 1.53499 * 114.20388 * 154.99688 * 13 12 10 15 15 N 1.47069 * 87.98409 * 87.71723 * 14 13 12 16 16 C 1.36933 * 136.05730 * 207.08420 * 15 14 13 17 17 H 1.07999 * 119.99981 * 354.45168 * 16 15 14 18 18 C 1.38813 * 119.99737 * 174.45370 * 16 15 14 19 19 N 1.31617 * 119.99752 * 182.83848 * 18 16 15 20 20 Si 1.86795 * 120.00234 * 2.83533 * 18 16 15 21 21 H 1.48499 * 109.47153 * 174.46692 * 20 18 16 22 22 H 1.48502 * 109.47177 * 294.46542 * 20 18 16 23 23 H 1.48502 * 109.47152 * 54.46718 * 20 18 16 24 24 C 1.47067 * 87.88288 * 27.34166 * 15 14 13 25 25 C 1.39560 * 120.00248 * 0.28024 * 9 8 7 26 26 C 1.37820 * 119.99626 * 359.44086 * 25 9 8 27 27 H 1.09001 * 109.47154 * 270.00153 * 1 2 3 28 28 H 1.09002 * 109.46852 * 30.00213 * 1 2 3 29 29 H 1.08996 * 109.46865 * 149.99830 * 1 2 3 30 30 H 1.08999 * 109.47064 * 265.67885 * 3 2 1 31 31 H 1.08991 * 109.47254 * 25.68717 * 3 2 1 32 32 H 1.09003 * 109.46636 * 145.68503 * 3 2 1 33 33 H 1.07999 * 120.00389 * 359.97438 * 7 6 4 34 34 H 1.07994 * 120.00254 * 179.97438 * 8 7 6 35 35 H 0.96993 * 120.00392 * 359.97438 * 12 10 9 36 36 H 1.08996 * 113.28355 * 21.93413 * 13 12 10 37 37 H 1.09000 * 113.46932 * 332.94048 * 14 13 12 38 38 H 1.08995 * 113.52053 * 202.50932 * 14 13 12 39 39 H 0.97000 * 120.00343 * 5.00861 * 19 18 16 40 40 H 1.09000 * 113.47093 * 87.43726 * 24 15 14 41 41 H 1.09006 * 113.46671 * 217.87729 * 24 15 14 42 42 H 1.08000 * 119.99844 * 179.72742 * 25 9 8 43 43 H 1.08000 * 119.99588 * 180.27131 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1390 -1.1672 0.0005 5 8 1.5335 -2.2184 -0.0708 6 6 3.6167 -1.1686 0.0878 7 6 4.2627 -2.0345 0.9712 8 6 5.6385 -2.0355 1.0529 9 6 6.3856 -1.1709 0.2518 10 6 7.8634 -1.1723 0.3391 11 8 8.4258 -1.9261 1.1087 12 7 8.5849 -0.3369 -0.4342 13 6 10.0474 -0.3379 -0.3474 14 6 10.7535 0.1573 -1.6171 15 7 10.6479 1.5226 -1.0809 16 6 10.5811 2.7856 -1.6058 17 1 10.6941 2.9350 -2.6694 18 6 10.3681 3.8738 -0.7707 19 7 10.2480 5.0812 -1.2808 20 14 10.2518 3.6247 1.0769 21 1 10.1575 4.9453 1.7495 22 1 9.0437 2.8209 1.3930 23 1 11.4616 2.9098 1.5572 24 6 10.6523 0.9350 0.2672 25 6 5.7394 -0.3012 -0.6278 26 6 4.3638 -0.3043 -0.7136 27 1 -0.3633 0.0000 1.0277 28 1 -0.3633 0.8900 -0.5139 29 1 -0.3633 -0.8899 -0.5138 30 1 2.4462 1.5448 -1.0247 31 1 1.5771 2.0465 0.4454 32 1 3.1142 1.1591 0.5794 33 1 3.6845 -2.7034 1.5915 34 1 6.1384 -2.7054 1.7368 35 1 8.1359 0.2650 -1.0482 36 1 10.4542 -1.2643 0.0579 37 1 10.1721 0.0017 -2.5259 38 1 11.7810 -0.1948 -1.7089 39 1 10.2355 5.2021 -2.2431 40 1 11.6531 0.7875 0.6733 41 1 9.9847 1.4420 0.9640 42 1 6.3174 0.3711 -1.2445 43 1 3.8640 0.3657 -1.3974 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031270989.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:40 Heat of formation + Delta-G solvation = 37.273101 kcal Electronic energy + Delta-G solvation = -25980.738632 eV Core-core repulsion = 22221.894851 eV Total energy + Delta-G solvation = -3758.843781 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.80420 -39.97926 -38.62766 -37.56279 -35.95340 -33.71365 -32.39521 -31.71954 -31.16708 -28.43147 -27.93546 -26.82433 -25.46531 -24.48439 -22.99650 -22.43624 -20.90296 -20.03900 -19.58170 -18.05205 -17.58168 -17.47753 -16.76999 -16.34078 -15.96957 -15.37954 -15.04157 -14.96721 -14.75181 -14.39792 -13.96851 -13.88935 -13.84787 -13.42859 -13.35466 -13.05584 -13.04172 -12.91928 -12.67433 -12.56480 -12.27947 -12.05840 -11.44762 -11.36878 -11.10673 -10.67228 -10.38030 -10.32190 -9.90297 -9.50586 -9.31158 -9.22848 -9.21322 -9.08814 -9.02077 -8.58447 -7.26139 -6.38955 -3.33229 0.34123 1.07458 2.23190 2.56096 2.90335 3.21995 3.35003 3.40094 3.59761 3.67188 4.05473 4.48590 4.51446 4.58469 4.65750 4.70138 4.74090 4.90030 4.94898 5.03590 5.06441 5.14217 5.21470 5.33227 5.35545 5.39305 5.43632 5.67704 5.77309 5.83730 5.91543 5.94476 6.05612 6.07874 6.12765 6.17438 6.24515 6.34138 6.49181 6.87850 6.88600 6.99115 7.69765 7.73463 8.14571 8.30214 8.88522 9.40698 10.25852 11.12454 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014997 B = 0.003381 C = 0.002972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1866.626955 B = 8279.727085 C = 9417.724629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.617 5.617 3 C 0.070 3.930 4 C 0.560 3.440 5 O -0.532 6.532 6 C -0.110 4.110 7 C -0.078 4.078 8 C -0.064 4.064 9 C -0.106 4.106 10 C 0.555 3.445 11 O -0.540 6.540 12 N -0.688 5.688 13 C 0.099 3.901 14 C 0.115 3.885 15 N -0.628 5.628 16 C -0.306 4.306 17 H 0.082 0.918 18 C -0.021 4.021 19 N -0.934 5.934 20 Si 1.073 2.927 21 H -0.296 1.296 22 H -0.293 1.293 23 H -0.290 1.290 24 C 0.078 3.922 25 C -0.088 4.088 26 C -0.098 4.098 27 H 0.057 0.943 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.063 0.937 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.136 0.864 34 H 0.144 0.856 35 H 0.407 0.593 36 H 0.106 0.894 37 H 0.051 0.949 38 H 0.053 0.947 39 H 0.261 0.739 40 H 0.054 0.946 41 H 0.058 0.942 42 H 0.138 0.862 43 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.485 -10.515 2.362 19.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.350 5.350 3 C -0.073 4.073 4 C 0.348 3.652 5 O -0.409 6.409 6 C -0.113 4.113 7 C -0.096 4.096 8 C -0.083 4.083 9 C -0.109 4.109 10 C 0.342 3.658 11 O -0.419 6.419 12 N -0.337 5.337 13 C -0.007 4.007 14 C -0.013 4.013 15 N -0.357 5.357 16 C -0.432 4.432 17 H 0.100 0.900 18 C -0.220 4.220 19 N -0.576 5.576 20 Si 0.906 3.094 21 H -0.223 1.223 22 H -0.221 1.221 23 H -0.217 1.217 24 C -0.049 4.049 25 C -0.107 4.107 26 C -0.116 4.116 27 H 0.075 0.925 28 H 0.091 0.909 29 H 0.097 0.903 30 H 0.082 0.918 31 H 0.095 0.905 32 H 0.098 0.902 33 H 0.154 0.846 34 H 0.162 0.838 35 H 0.243 0.757 36 H 0.124 0.876 37 H 0.069 0.931 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.072 0.928 41 H 0.075 0.925 42 H 0.156 0.844 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -16.569 -10.510 4.176 20.061 hybrid contribution 0.178 -0.203 -1.857 1.876 sum -16.392 -10.713 2.319 19.719 Atomic orbital electron populations 1.21693 0.78616 1.03439 1.02089 1.47673 1.07310 1.06401 1.73647 1.22116 0.97959 0.84755 1.02421 1.18479 0.87198 0.83425 0.76079 1.90784 1.69736 1.31041 1.49306 1.19966 0.92647 0.98925 0.99810 1.21106 0.94072 0.96986 0.97463 1.21241 0.92874 0.96959 0.97246 1.20209 0.93428 0.98526 0.98741 1.18252 0.86567 0.80454 0.80530 1.90744 1.72199 1.40829 1.38127 1.45428 1.06840 1.39631 1.41841 1.22466 0.79621 0.98929 0.99718 1.22704 0.97638 0.85863 0.95060 1.46259 1.86924 1.01367 1.01173 1.20157 1.47900 0.80947 0.94173 0.89993 1.25662 0.98818 0.91600 1.05946 1.70923 1.52125 1.20658 1.13860 0.83667 0.76234 0.73819 0.75658 1.22349 1.22130 1.21692 1.23354 0.98546 0.91879 0.91077 1.21383 0.94505 0.97500 0.97317 1.21341 0.93751 0.97709 0.98797 0.92483 0.90906 0.90300 0.91837 0.90518 0.90154 0.84593 0.83786 0.75669 0.87613 0.93099 0.92925 0.92887 0.92832 0.92455 0.84433 0.84505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.58 10.45 59.85 0.63 1.21 16 2 N -0.62 -5.43 3.27 -190.57 -0.62 -6.05 16 3 C 0.07 0.45 9.01 59.85 0.54 0.99 16 4 C 0.56 6.50 7.27 -12.24 -0.09 6.41 16 5 O -0.53 -7.87 16.55 5.35 0.09 -7.78 16 6 C -0.11 -1.20 4.98 -104.90 -0.52 -1.73 16 7 C -0.08 -0.85 9.68 -39.24 -0.38 -1.23 16 8 C -0.06 -0.76 9.58 -39.24 -0.38 -1.14 16 9 C -0.11 -1.38 5.88 -104.89 -0.62 -1.99 16 10 C 0.56 8.76 7.78 -12.24 -0.10 8.67 16 11 O -0.54 -9.90 15.93 5.34 0.09 -9.81 16 12 N -0.69 -10.99 5.35 -54.37 -0.29 -11.28 16 13 C 0.10 1.71 4.61 -67.67 -0.31 1.39 16 14 C 0.11 2.07 8.44 -8.51 -0.07 2.00 16 15 N -0.63 -14.48 3.69 -184.62 -0.68 -15.16 16 16 C -0.31 -8.35 11.09 -15.06 -0.17 -8.51 16 17 H 0.08 2.36 8.05 -52.49 -0.42 1.94 16 18 C -0.02 -0.61 5.50 -17.43 -0.10 -0.70 16 19 N -0.93 -28.44 13.70 55.49 0.76 -27.68 16 20 Si 1.07 26.37 25.07 -169.99 -4.26 22.11 16 21 H -0.30 -7.43 7.11 56.52 0.40 -7.03 16 22 H -0.29 -6.80 6.42 56.52 0.36 -6.44 16 23 H -0.29 -6.80 6.62 56.52 0.37 -6.42 16 24 C 0.08 1.60 5.77 -8.38 -0.05 1.56 16 25 C -0.09 -0.98 9.53 -39.24 -0.37 -1.35 16 26 C -0.10 -0.96 7.70 -39.24 -0.30 -1.26 16 27 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.07 0.33 8.07 -51.93 -0.42 -0.09 16 29 H 0.08 0.64 7.37 -51.93 -0.38 0.26 16 30 H 0.06 0.34 7.00 -51.93 -0.36 -0.02 16 31 H 0.08 0.36 8.04 -51.93 -0.42 -0.06 16 32 H 0.08 0.57 6.16 -51.93 -0.32 0.25 16 33 H 0.14 1.33 8.06 -52.49 -0.42 0.91 16 34 H 0.14 1.65 7.64 -52.49 -0.40 1.25 16 35 H 0.41 6.13 6.78 -40.82 -0.28 5.86 16 36 H 0.11 1.71 7.45 -51.93 -0.39 1.32 16 37 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.26 7.83 8.73 -40.82 -0.36 7.48 16 40 H 0.05 1.07 8.09 -51.93 -0.42 0.65 16 41 H 0.06 1.27 3.98 -51.93 -0.21 1.06 16 42 H 0.14 1.40 6.39 -52.49 -0.34 1.07 16 43 H 0.14 1.04 6.05 -52.49 -0.32 0.73 16 LS Contribution 353.25 15.07 5.32 5.32 Total: -1.00 -35.02 353.25 -7.46 -42.48 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -5.58 Total: 3.55 kcal Atomic # 6 Polarization: 6.58 SS G_CDS: -2.29 Total: 4.30 kcal Atomic # 7 Polarization: -59.34 SS G_CDS: -0.84 Total: -60.17 kcal Atomic # 8 Polarization: -17.76 SS G_CDS: 0.17 Total: -17.59 kcal Atomic # 14 Polarization: 26.37 SS G_CDS: -4.26 Total: 22.11 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -35.02 -7.46 -42.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031270989.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.756 kcal (2) G-P(sol) polarization free energy of solvation -35.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.483 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds