Wall clock time and date at job start Tue Mar 31 2020 11:28:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46508 * 119.99649 * 2 1 4 4 C 1.34780 * 120.00193 * 179.97438 * 2 1 3 5 5 O 1.21519 * 119.99944 * 3.90953 * 4 2 1 6 6 C 1.48036 * 120.00046 * 183.90495 * 4 2 1 7 7 C 1.39548 * 119.99899 * 133.79598 * 6 4 2 8 8 C 1.37825 * 120.00134 * 180.02562 * 7 6 4 9 9 C 1.39552 * 119.99550 * 359.97438 * 8 7 6 10 10 C 1.48039 * 119.99949 * 180.02562 * 9 8 7 11 11 O 1.21526 * 119.99584 * 359.97438 * 10 9 8 12 12 N 1.34776 * 119.99930 * 180.02562 * 10 9 8 13 13 C 1.46506 * 119.99597 * 179.97438 * 12 10 9 14 14 C 1.53499 * 114.20388 * 154.99688 * 13 12 10 15 15 N 1.47069 * 87.98409 * 87.71723 * 14 13 12 16 16 C 1.36933 * 136.05730 * 207.08420 * 15 14 13 17 17 H 1.07999 * 119.99981 * 354.45168 * 16 15 14 18 18 C 1.38813 * 119.99737 * 174.45370 * 16 15 14 19 19 N 1.31617 * 119.99752 * 182.83848 * 18 16 15 20 20 Si 1.86795 * 120.00234 * 2.83533 * 18 16 15 21 21 H 1.48499 * 109.47153 * 174.46692 * 20 18 16 22 22 H 1.48502 * 109.47177 * 294.46542 * 20 18 16 23 23 H 1.48502 * 109.47152 * 54.46718 * 20 18 16 24 24 C 1.47067 * 87.88288 * 27.34166 * 15 14 13 25 25 C 1.39560 * 120.00248 * 0.28024 * 9 8 7 26 26 C 1.37820 * 119.99626 * 359.44086 * 25 9 8 27 27 H 1.09001 * 109.47154 * 270.00153 * 1 2 3 28 28 H 1.09002 * 109.46852 * 30.00213 * 1 2 3 29 29 H 1.08996 * 109.46865 * 149.99830 * 1 2 3 30 30 H 1.08999 * 109.47064 * 265.67885 * 3 2 1 31 31 H 1.08991 * 109.47254 * 25.68717 * 3 2 1 32 32 H 1.09003 * 109.46636 * 145.68503 * 3 2 1 33 33 H 1.07999 * 120.00389 * 359.97438 * 7 6 4 34 34 H 1.07994 * 120.00254 * 179.97438 * 8 7 6 35 35 H 0.96993 * 120.00392 * 359.97438 * 12 10 9 36 36 H 1.08996 * 113.28355 * 21.93413 * 13 12 10 37 37 H 1.09000 * 113.46932 * 332.94048 * 14 13 12 38 38 H 1.08995 * 113.52053 * 202.50932 * 14 13 12 39 39 H 0.97000 * 120.00343 * 5.00861 * 19 18 16 40 40 H 1.09000 * 113.47093 * 87.43726 * 24 15 14 41 41 H 1.09006 * 113.46671 * 217.87729 * 24 15 14 42 42 H 1.08000 * 119.99844 * 179.72742 * 25 9 8 43 43 H 1.08000 * 119.99588 * 180.27131 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1390 -1.1672 0.0005 5 8 1.5335 -2.2184 -0.0708 6 6 3.6167 -1.1686 0.0878 7 6 4.2627 -2.0345 0.9712 8 6 5.6385 -2.0355 1.0529 9 6 6.3856 -1.1709 0.2518 10 6 7.8634 -1.1723 0.3391 11 8 8.4258 -1.9261 1.1087 12 7 8.5849 -0.3369 -0.4342 13 6 10.0474 -0.3379 -0.3474 14 6 10.7535 0.1573 -1.6171 15 7 10.6479 1.5226 -1.0809 16 6 10.5811 2.7856 -1.6058 17 1 10.6941 2.9350 -2.6694 18 6 10.3681 3.8738 -0.7707 19 7 10.2480 5.0812 -1.2808 20 14 10.2518 3.6247 1.0769 21 1 10.1575 4.9453 1.7495 22 1 9.0437 2.8209 1.3930 23 1 11.4616 2.9098 1.5572 24 6 10.6523 0.9350 0.2672 25 6 5.7394 -0.3012 -0.6278 26 6 4.3638 -0.3043 -0.7136 27 1 -0.3633 0.0000 1.0277 28 1 -0.3633 0.8900 -0.5139 29 1 -0.3633 -0.8899 -0.5138 30 1 2.4462 1.5448 -1.0247 31 1 1.5771 2.0465 0.4454 32 1 3.1142 1.1591 0.5794 33 1 3.6845 -2.7034 1.5915 34 1 6.1384 -2.7054 1.7368 35 1 8.1359 0.2650 -1.0482 36 1 10.4542 -1.2643 0.0579 37 1 10.1721 0.0017 -2.5259 38 1 11.7810 -0.1948 -1.7089 39 1 10.2355 5.2021 -2.2431 40 1 11.6531 0.7875 0.6733 41 1 9.9847 1.4420 0.9640 42 1 6.3174 0.3711 -1.2445 43 1 3.8640 0.3657 -1.3974 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001031270989.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:39 Heat of formation + Delta-G solvation = 11.986543 kcal Electronic energy + Delta-G solvation = -25981.835139 eV Core-core repulsion = 22221.894851 eV Total energy + Delta-G solvation = -3759.940288 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.76533 -41.14636 -39.89571 -38.73074 -36.72334 -35.21902 -34.23413 -32.68670 -32.11786 -29.79681 -28.92671 -27.61336 -27.03578 -25.55295 -24.25481 -23.63634 -22.09125 -21.23876 -20.80078 -19.53370 -19.11501 -18.34107 -17.77652 -17.42963 -17.01038 -16.76025 -16.25126 -15.96066 -15.86385 -15.66411 -15.40347 -15.26365 -14.96276 -14.78749 -14.36002 -14.23550 -13.80079 -13.59722 -13.54883 -13.41141 -13.38377 -13.28056 -12.85752 -12.78430 -12.50126 -12.20307 -12.02607 -11.35364 -11.26411 -11.17936 -11.10085 -11.02324 -10.25283 -10.12349 -9.95022 -9.77015 -9.21292 -8.59907 -5.45533 -0.59541 0.22776 1.29572 1.39368 1.46222 1.66286 1.76022 1.96054 2.02385 2.52013 2.69835 2.97774 3.22620 3.27099 3.56178 3.61120 3.71986 3.79896 4.15828 4.22376 4.25962 4.28947 4.35011 4.39844 4.45300 4.56017 4.63965 4.66606 4.70812 4.76249 4.85699 4.87314 4.89848 4.93095 5.04950 5.13547 5.18697 5.19148 5.38989 5.51880 5.63690 5.97276 6.15001 6.46118 6.72105 6.91961 7.07089 7.33887 8.27172 8.94263 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014997 B = 0.003381 C = 0.002972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1866.626955 B = 8279.727085 C = 9417.724629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.611 5.611 3 C 0.062 3.938 4 C 0.554 3.446 5 O -0.573 6.573 6 C -0.111 4.111 7 C -0.079 4.079 8 C -0.065 4.065 9 C -0.122 4.122 10 C 0.558 3.442 11 O -0.568 6.568 12 N -0.689 5.689 13 C 0.119 3.881 14 C 0.118 3.882 15 N -0.654 5.654 16 C -0.284 4.284 17 H 0.056 0.944 18 C -0.077 4.077 19 N -0.972 5.972 20 Si 1.109 2.891 21 H -0.308 1.308 22 H -0.274 1.274 23 H -0.273 1.273 24 C 0.068 3.932 25 C -0.086 4.086 26 C -0.087 4.087 27 H 0.064 0.936 28 H 0.101 0.899 29 H 0.062 0.938 30 H 0.079 0.921 31 H 0.098 0.902 32 H 0.074 0.926 33 H 0.144 0.856 34 H 0.144 0.856 35 H 0.411 0.589 36 H 0.124 0.876 37 H 0.062 0.938 38 H 0.075 0.925 39 H 0.249 0.751 40 H 0.067 0.933 41 H 0.045 0.955 42 H 0.147 0.853 43 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.434 -11.254 2.722 20.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.343 5.343 3 C -0.079 4.079 4 C 0.343 3.657 5 O -0.454 6.454 6 C -0.114 4.114 7 C -0.098 4.098 8 C -0.084 4.084 9 C -0.125 4.125 10 C 0.347 3.653 11 O -0.449 6.449 12 N -0.339 5.339 13 C 0.013 3.987 14 C -0.007 4.007 15 N -0.384 5.384 16 C -0.411 4.411 17 H 0.074 0.926 18 C -0.269 4.269 19 N -0.618 5.618 20 Si 0.937 3.063 21 H -0.237 1.237 22 H -0.201 1.201 23 H -0.199 1.199 24 C -0.058 4.058 25 C -0.104 4.104 26 C -0.105 4.105 27 H 0.082 0.918 28 H 0.120 0.880 29 H 0.081 0.919 30 H 0.097 0.903 31 H 0.116 0.884 32 H 0.092 0.908 33 H 0.162 0.838 34 H 0.162 0.838 35 H 0.248 0.752 36 H 0.142 0.858 37 H 0.080 0.920 38 H 0.092 0.908 39 H 0.058 0.942 40 H 0.084 0.916 41 H 0.063 0.937 42 H 0.165 0.835 43 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -17.526 -11.272 4.520 21.322 hybrid contribution 0.426 -0.022 -2.042 2.086 sum -17.099 -11.294 2.478 20.642 Atomic orbital electron populations 1.21857 0.77506 1.04097 1.02794 1.47827 1.08216 1.06413 1.71827 1.22335 0.98001 0.84014 1.03564 1.18607 0.87382 0.83709 0.76000 1.90765 1.70406 1.32571 1.51625 1.20076 0.92635 0.98918 0.99753 1.21197 0.93752 0.97153 0.97693 1.21250 0.93137 0.96864 0.97181 1.20083 0.91874 1.00151 1.00411 1.18597 0.87573 0.79564 0.79609 1.90726 1.73005 1.41909 1.39250 1.45449 1.06439 1.39878 1.42084 1.22248 0.80234 0.97994 0.98266 1.22898 0.99089 0.82825 0.95929 1.46291 1.87240 1.01550 1.03288 1.20019 1.44997 0.83037 0.93060 0.92585 1.26715 0.99579 0.91405 1.09217 1.71006 1.55598 1.22169 1.13008 0.83213 0.77657 0.73506 0.71874 1.23694 1.20098 1.19941 1.23578 0.99298 0.93073 0.89823 1.21487 0.95051 0.97065 0.96815 1.21545 0.93160 0.97364 0.98399 0.91768 0.88013 0.91870 0.90267 0.88355 0.90754 0.83846 0.83807 0.75191 0.85828 0.91969 0.90756 0.94208 0.91579 0.93669 0.83495 0.82005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.93 10.45 127.77 1.33 2.27 16 2 N -0.61 -9.42 3.27 -875.13 -2.87 -12.29 16 3 C 0.06 0.61 9.01 127.77 1.15 1.76 16 4 C 0.55 12.14 7.27 86.84 0.63 12.77 16 5 O -0.57 -16.77 16.55 -3.77 -0.06 -16.84 16 6 C -0.11 -2.23 4.98 -20.04 -0.10 -2.33 16 7 C -0.08 -1.65 9.68 22.49 0.22 -1.43 16 8 C -0.07 -1.48 9.58 22.49 0.22 -1.27 16 9 C -0.12 -2.98 5.88 -20.04 -0.12 -3.09 16 10 C 0.56 16.62 7.78 86.84 0.68 17.29 16 11 O -0.57 -19.93 15.93 -3.80 -0.06 -19.99 16 12 N -0.69 -20.44 5.35 -444.21 -2.38 -22.82 16 13 C 0.12 3.77 4.61 45.55 0.21 3.98 16 14 C 0.12 3.95 8.44 83.18 0.70 4.65 16 15 N -0.65 -28.98 3.69 -738.02 -2.72 -31.70 16 16 C -0.28 -15.42 11.09 84.03 0.93 -14.49 16 17 H 0.06 3.28 8.05 -2.91 -0.02 3.26 16 18 C -0.08 -4.39 5.50 84.86 0.47 -3.92 16 19 N -0.97 -60.41 13.70 21.65 0.30 -60.11 16 20 Si 1.11 52.78 25.07 68.60 1.72 54.50 16 21 H -0.31 -15.19 7.11 99.48 0.71 -14.49 16 22 H -0.27 -12.01 6.42 99.48 0.64 -11.38 16 23 H -0.27 -12.11 6.62 99.48 0.66 -11.45 16 24 C 0.07 2.64 5.77 83.26 0.48 3.12 16 25 C -0.09 -1.71 9.53 22.49 0.21 -1.49 16 26 C -0.09 -1.48 7.70 22.49 0.17 -1.31 16 27 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.10 0.61 8.07 -2.39 -0.02 0.59 16 29 H 0.06 0.97 7.37 -2.39 -0.02 0.95 16 30 H 0.08 0.56 7.00 -2.39 -0.02 0.54 16 31 H 0.10 0.57 8.04 -2.39 -0.02 0.55 16 32 H 0.07 0.85 6.16 -2.39 -0.01 0.83 16 33 H 0.14 2.71 8.06 -2.91 -0.02 2.69 16 34 H 0.14 3.20 7.64 -2.91 -0.02 3.18 16 35 H 0.41 11.49 6.78 -92.71 -0.63 10.86 16 36 H 0.12 3.58 7.45 -2.39 -0.02 3.56 16 37 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 38 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 39 H 0.25 15.43 8.73 -92.71 -0.81 14.62 16 40 H 0.07 2.43 8.09 -2.39 -0.02 2.41 16 41 H 0.05 1.88 3.98 -2.38 -0.01 1.87 16 42 H 0.15 2.63 6.39 -2.91 -0.02 2.61 16 43 H 0.16 1.92 6.05 -2.91 -0.02 1.90 16 Total: -1.00 -76.22 353.25 1.38 -74.84 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: 0.27 Total: 17.92 kcal Atomic # 6 Polarization: 9.31 SS G_CDS: 7.19 Total: 16.50 kcal Atomic # 7 Polarization: -119.26 SS G_CDS: -7.67 Total: -126.93 kcal Atomic # 8 Polarization: -36.71 SS G_CDS: -0.12 Total: -36.83 kcal Atomic # 14 Polarization: 52.78 SS G_CDS: 1.72 Total: 54.50 kcal Total: -76.22 1.38 -74.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031270989.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.822 kcal (2) G-P(sol) polarization free energy of solvation -76.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.836 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds