Wall clock time and date at job start Tue Mar 31 2020 11:28:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46494 * 120.00333 * 2 1 4 4 C 1.34783 * 119.99677 * 179.97438 * 2 1 3 5 5 O 1.21538 * 120.00113 * 4.44250 * 4 2 1 6 6 C 1.47951 * 119.99672 * 184.43655 * 4 2 1 7 7 C 1.39214 * 120.20044 * 299.32361 * 6 4 2 8 8 C 1.38206 * 119.99680 * 179.97438 * 7 6 4 9 9 C 1.38372 * 120.39844 * 359.97309 * 8 7 6 10 10 C 1.38213 * 120.39788 * 0.02735 * 9 8 7 11 11 C 1.39213 * 119.99583 * 359.97438 * 10 9 8 12 12 C 1.47944 * 120.19666 * 179.97438 * 11 10 9 13 13 O 1.21535 * 119.99856 * 184.21211 * 12 11 10 14 14 N 1.34779 * 120.00306 * 4.20800 * 12 11 10 15 15 C 1.46491 * 119.99932 * 179.97438 * 14 12 11 16 16 C 1.53951 * 113.74001 * 253.73827 * 15 14 12 17 17 N 1.47813 * 86.03899 * 222.08768 * 16 15 14 18 18 C 1.36940 * 134.45638 * 204.65056 * 17 16 15 19 19 H 1.07999 * 119.99735 * 179.86827 * 18 17 16 20 20 C 1.38803 * 119.99983 * 359.86130 * 18 17 16 21 21 N 1.31612 * 120.00509 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99975 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.46919 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.47235 * 119.99915 * 22 20 18 25 25 H 1.48494 * 109.47347 * 240.00374 * 22 20 18 26 26 C 1.47585 * 91.05059 * 24.55160 * 17 16 15 27 27 H 1.09001 * 109.47274 * 270.00428 * 1 2 3 28 28 H 1.09007 * 109.47061 * 29.99908 * 1 2 3 29 29 H 1.09000 * 109.47709 * 150.00027 * 1 2 3 30 30 H 1.09004 * 109.47425 * 235.96175 * 3 2 1 31 31 H 1.08999 * 109.47190 * 355.96264 * 3 2 1 32 32 H 1.08998 * 109.47084 * 115.95993 * 3 2 1 33 33 H 1.08000 * 120.00191 * 359.95885 * 7 6 4 34 34 H 1.08003 * 119.80292 * 180.02562 * 8 7 6 35 35 H 1.08000 * 119.80207 * 180.02562 * 9 8 7 36 36 H 1.08000 * 119.99792 * 179.72141 * 10 9 8 37 37 H 0.96999 * 119.99695 * 0.02562 * 14 12 11 38 38 H 1.08995 * 112.95287 * 25.33562 * 15 14 12 39 39 H 1.08991 * 113.77306 * 336.35559 * 16 15 14 40 40 H 1.09007 * 113.76420 * 107.75246 * 16 15 14 41 41 H 0.96998 * 120.00827 * 180.02562 * 21 20 18 42 42 H 1.09000 * 113.77110 * 221.15317 * 26 17 16 43 43 H 1.08996 * 113.77144 * 89.74985 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.1388 -1.1673 0.0005 5 8 1.5338 -2.2183 -0.0805 6 6 3.6150 -1.1692 0.0996 7 6 4.3832 -0.5411 -0.8768 8 6 5.7618 -0.5450 -0.7798 9 6 6.3871 -1.1701 0.2847 10 6 5.6404 -1.7986 1.2633 11 6 4.2506 -1.8048 1.1819 12 6 3.4470 -2.4767 2.2267 13 8 2.2390 -2.5465 2.1131 14 7 4.0546 -3.0114 3.3044 15 6 3.2587 -3.6762 4.3391 16 6 3.1221 -2.8589 5.6366 17 7 3.3423 -4.1378 6.3443 18 6 3.0134 -4.6168 7.5843 19 1 3.2974 -5.6192 7.8688 20 6 2.3151 -3.8139 8.4756 21 7 1.9686 -2.5925 8.1289 22 14 1.8671 -4.4670 10.1675 23 1 2.3684 -5.8576 10.3099 24 1 2.4865 -3.6089 11.2093 25 1 0.3910 -4.4536 10.3284 26 6 4.0562 -4.6918 5.1774 27 1 -0.3634 0.0001 1.0277 28 1 -0.3633 0.8901 -0.5139 29 1 -0.3634 -0.8900 -0.5138 30 1 2.8773 1.2957 -0.8516 31 1 1.4914 2.0959 -0.0724 32 1 2.7687 1.3583 0.9240 33 1 3.9019 -0.0511 -1.7103 34 1 6.3548 -0.0564 -1.5389 35 1 7.4650 -1.1669 0.3512 36 1 6.1352 -2.2884 2.0889 37 1 5.0187 -2.9554 3.3952 38 1 2.3121 -4.0645 3.9634 39 1 3.9207 -2.1320 5.7842 40 1 2.1282 -2.4374 5.7876 41 1 1.4810 -2.0312 8.7519 42 1 3.8069 -5.7309 4.9625 43 1 5.1299 -4.5045 5.1897 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031271500.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:43 Heat of formation + Delta-G solvation = 34.057753 kcal Electronic energy + Delta-G solvation = -26486.933523 eV Core-core repulsion = 22727.950314 eV Total energy + Delta-G solvation = -3758.983209 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.71774 -39.16709 -38.26214 -37.28663 -35.41887 -33.62075 -32.06215 -31.61527 -31.06825 -28.08489 -27.46327 -26.39723 -24.81689 -24.37211 -23.24549 -22.69138 -20.50103 -19.94996 -19.35080 -17.76514 -17.07987 -16.77824 -16.37051 -16.00846 -15.60570 -15.28287 -14.96742 -14.80672 -14.65796 -14.42042 -13.78484 -13.60589 -13.53004 -13.06829 -12.80777 -12.74642 -12.61673 -12.45256 -12.16523 -12.00925 -11.85116 -11.67046 -11.43229 -11.37831 -10.88108 -10.77401 -10.41346 -10.02194 -9.85704 -9.54321 -9.41169 -9.27751 -9.17004 -8.80858 -8.63947 -8.38459 -6.91323 -5.76713 -3.10734 0.59291 0.89113 2.71047 2.89220 3.14468 3.37967 3.42153 3.46744 3.48071 3.76941 4.31561 4.45098 4.51266 4.60029 4.72743 4.91731 5.04519 5.07981 5.17276 5.18429 5.22631 5.43561 5.48522 5.49007 5.54472 5.59722 5.60955 5.84265 5.93649 5.97835 6.05774 6.08927 6.23256 6.41930 6.42566 6.50716 6.58324 6.77465 7.24676 7.30665 7.38014 7.57005 7.88143 7.97044 8.27037 8.58398 9.03311 9.69714 10.56297 11.40114 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.017418 B = 0.003234 C = 0.002922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.142232 B = 8655.263056 C = 9579.425733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.623 5.623 3 C 0.079 3.921 4 C 0.564 3.436 5 O -0.493 6.493 6 C -0.070 4.070 7 C -0.102 4.102 8 C -0.103 4.103 9 C -0.110 4.110 10 C -0.089 4.089 11 C -0.086 4.086 12 C 0.540 3.460 13 O -0.506 6.506 14 N -0.710 5.710 15 C 0.094 3.906 16 C 0.155 3.845 17 N -0.607 5.607 18 C -0.225 4.225 19 H 0.083 0.917 20 C -0.006 4.006 21 N -0.918 5.918 22 Si 0.914 3.086 23 H -0.279 1.279 24 H -0.290 1.290 25 H -0.289 1.289 26 C 0.113 3.887 27 H 0.056 0.944 28 H 0.066 0.934 29 H 0.076 0.924 30 H 0.062 0.938 31 H 0.077 0.923 32 H 0.059 0.941 33 H 0.132 0.868 34 H 0.132 0.868 35 H 0.133 0.867 36 H 0.134 0.866 37 H 0.393 0.607 38 H 0.112 0.888 39 H 0.028 0.972 40 H 0.076 0.924 41 H 0.254 0.746 42 H 0.050 0.950 43 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.447 9.757 -21.049 24.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.359 5.359 3 C -0.064 4.064 4 C 0.351 3.649 5 O -0.365 6.365 6 C -0.074 4.074 7 C -0.120 4.120 8 C -0.121 4.121 9 C -0.128 4.128 10 C -0.108 4.108 11 C -0.090 4.090 12 C 0.325 3.675 13 O -0.381 6.381 14 N -0.362 5.362 15 C -0.011 4.011 16 C 0.029 3.971 17 N -0.333 5.333 18 C -0.352 4.352 19 H 0.100 0.900 20 C -0.203 4.203 21 N -0.565 5.565 22 Si 0.744 3.256 23 H -0.204 1.204 24 H -0.217 1.217 25 H -0.216 1.216 26 C -0.014 4.014 27 H 0.075 0.925 28 H 0.085 0.915 29 H 0.095 0.905 30 H 0.080 0.920 31 H 0.095 0.905 32 H 0.077 0.923 33 H 0.150 0.850 34 H 0.150 0.850 35 H 0.150 0.850 36 H 0.152 0.848 37 H 0.228 0.772 38 H 0.129 0.871 39 H 0.046 0.954 40 H 0.095 0.905 41 H 0.064 0.936 42 H 0.068 0.932 43 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 7.035 9.105 -20.812 23.781 hybrid contribution 0.500 -0.032 1.145 1.249 sum 7.535 9.074 -19.667 22.932 Atomic orbital electron populations 1.21625 0.78755 1.02645 1.02217 1.47538 1.07065 1.05900 1.75408 1.21856 0.97308 0.85351 1.01883 1.18017 0.86593 0.83650 0.76656 1.90813 1.68821 1.30648 1.46206 1.19914 0.93771 0.98323 0.95358 1.21195 0.93961 0.98607 0.98258 1.21252 0.94136 0.98607 0.98127 1.21267 1.00407 0.97176 0.93980 1.21359 0.92285 0.98096 0.99072 1.20132 0.93797 0.99538 0.95569 1.18268 0.87878 0.79607 0.81788 1.90912 1.13335 1.57107 1.76751 1.46041 1.10630 1.57853 1.21639 1.23926 0.95738 0.95485 0.85962 1.22706 1.00768 0.89304 0.84359 1.45715 1.63037 1.12193 1.12404 1.19035 1.30128 0.97856 0.88199 0.89973 1.24815 1.00744 0.96107 0.98655 1.69838 1.43427 1.07809 1.35432 0.86020 0.77967 0.77889 0.83711 1.20389 1.21719 1.21599 1.22872 0.94968 0.96533 0.87042 0.92510 0.91543 0.90505 0.91979 0.90467 0.92268 0.84992 0.85050 0.84954 0.84782 0.77193 0.87052 0.95407 0.90525 0.93601 0.93154 0.94740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.03 10.45 59.84 0.63 1.66 16 2 N -0.62 -7.93 3.27 -190.61 -0.62 -8.56 16 3 C 0.08 0.67 9.54 59.84 0.57 1.24 16 4 C 0.56 9.05 5.70 -12.28 -0.07 8.98 16 5 O -0.49 -10.08 14.44 -18.53 -0.27 -10.34 16 6 C -0.07 -0.93 4.97 -104.63 -0.52 -1.45 16 7 C -0.10 -0.94 8.19 -39.23 -0.32 -1.26 16 8 C -0.10 -0.74 10.03 -39.54 -0.40 -1.14 16 9 C -0.11 -0.84 10.03 -39.54 -0.40 -1.24 16 10 C -0.09 -0.90 9.53 -39.23 -0.37 -1.28 16 11 C -0.09 -1.21 5.90 -104.63 -0.62 -1.83 16 12 C 0.54 9.67 7.74 -12.28 -0.10 9.58 16 13 O -0.51 -11.28 12.61 -18.53 -0.23 -11.52 16 14 N -0.71 -11.80 5.32 -56.25 -0.30 -12.10 16 15 C 0.09 1.92 4.40 -70.13 -0.31 1.61 16 16 C 0.16 3.82 7.33 -2.84 -0.02 3.80 16 17 N -0.61 -15.93 3.70 -177.84 -0.66 -16.59 16 18 C -0.22 -6.42 10.70 -15.06 -0.16 -6.58 16 19 H 0.08 2.25 7.83 -52.49 -0.41 1.84 16 20 C -0.01 -0.18 5.50 -17.44 -0.10 -0.28 16 21 N -0.92 -27.88 11.39 55.49 0.63 -27.25 16 22 Si 0.91 22.45 29.55 -169.99 -5.02 17.43 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 24 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 25 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 26 C 0.11 2.32 8.69 -2.96 -0.03 2.29 16 27 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 28 H 0.07 0.52 7.89 -51.92 -0.41 0.11 16 29 H 0.08 0.98 7.36 -51.93 -0.38 0.60 16 30 H 0.06 0.40 5.79 -51.93 -0.30 0.10 16 31 H 0.08 0.47 7.77 -51.93 -0.40 0.07 16 32 H 0.06 0.54 8.12 -51.93 -0.42 0.12 16 33 H 0.13 0.92 6.94 -52.49 -0.36 0.56 16 34 H 0.13 0.55 8.06 -52.48 -0.42 0.13 16 35 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 36 H 0.13 1.09 6.42 -52.49 -0.34 0.75 16 37 H 0.39 5.17 6.77 -40.82 -0.28 4.90 16 38 H 0.11 2.54 7.51 -51.93 -0.39 2.15 16 39 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.08 2.15 7.17 -51.93 -0.37 1.78 16 41 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 42 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.04 0.64 8.11 -51.93 -0.42 0.22 16 LS Contribution 356.83 15.07 5.38 5.38 Total: -1.00 -38.32 356.83 -9.04 -47.36 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -5.74 Total: 2.09 kcal Atomic # 6 Polarization: 16.31 SS G_CDS: -2.21 Total: 14.11 kcal Atomic # 7 Polarization: -63.55 SS G_CDS: -0.95 Total: -64.50 kcal Atomic # 8 Polarization: -21.36 SS G_CDS: -0.50 Total: -21.86 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -38.32 -9.04 -47.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031271500.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.420 kcal (2) G-P(sol) polarization free energy of solvation -38.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.362 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds