Wall clock time and date at job start Tue Mar 31 2020 11:28:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46494 * 120.00333 * 2 1 4 4 C 1.34783 * 119.99677 * 179.97438 * 2 1 3 5 5 O 1.21538 * 120.00113 * 4.44250 * 4 2 1 6 6 C 1.47951 * 119.99672 * 184.43655 * 4 2 1 7 7 C 1.39214 * 120.20044 * 299.32361 * 6 4 2 8 8 C 1.38206 * 119.99680 * 179.97438 * 7 6 4 9 9 C 1.38372 * 120.39844 * 359.97309 * 8 7 6 10 10 C 1.38213 * 120.39788 * 0.02735 * 9 8 7 11 11 C 1.39213 * 119.99583 * 359.97438 * 10 9 8 12 12 C 1.47944 * 120.19666 * 179.97438 * 11 10 9 13 13 O 1.21535 * 119.99856 * 184.21211 * 12 11 10 14 14 N 1.34779 * 120.00306 * 4.20800 * 12 11 10 15 15 C 1.46491 * 119.99932 * 179.97438 * 14 12 11 16 16 C 1.53951 * 113.74001 * 253.73827 * 15 14 12 17 17 N 1.47813 * 86.03899 * 222.08768 * 16 15 14 18 18 C 1.36940 * 134.45638 * 204.65056 * 17 16 15 19 19 H 1.07999 * 119.99735 * 179.86827 * 18 17 16 20 20 C 1.38803 * 119.99983 * 359.86130 * 18 17 16 21 21 N 1.31612 * 120.00509 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99975 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.46919 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.47235 * 119.99915 * 22 20 18 25 25 H 1.48494 * 109.47347 * 240.00374 * 22 20 18 26 26 C 1.47585 * 91.05059 * 24.55160 * 17 16 15 27 27 H 1.09001 * 109.47274 * 270.00428 * 1 2 3 28 28 H 1.09007 * 109.47061 * 29.99908 * 1 2 3 29 29 H 1.09000 * 109.47709 * 150.00027 * 1 2 3 30 30 H 1.09004 * 109.47425 * 235.96175 * 3 2 1 31 31 H 1.08999 * 109.47190 * 355.96264 * 3 2 1 32 32 H 1.08998 * 109.47084 * 115.95993 * 3 2 1 33 33 H 1.08000 * 120.00191 * 359.95885 * 7 6 4 34 34 H 1.08003 * 119.80292 * 180.02562 * 8 7 6 35 35 H 1.08000 * 119.80207 * 180.02562 * 9 8 7 36 36 H 1.08000 * 119.99792 * 179.72141 * 10 9 8 37 37 H 0.96999 * 119.99695 * 0.02562 * 14 12 11 38 38 H 1.08995 * 112.95287 * 25.33562 * 15 14 12 39 39 H 1.08991 * 113.77306 * 336.35559 * 16 15 14 40 40 H 1.09007 * 113.76420 * 107.75246 * 16 15 14 41 41 H 0.96998 * 120.00827 * 180.02562 * 21 20 18 42 42 H 1.09000 * 113.77110 * 221.15317 * 26 17 16 43 43 H 1.08996 * 113.77144 * 89.74985 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.1388 -1.1673 0.0005 5 8 1.5338 -2.2183 -0.0805 6 6 3.6150 -1.1692 0.0996 7 6 4.3832 -0.5411 -0.8768 8 6 5.7618 -0.5450 -0.7798 9 6 6.3871 -1.1701 0.2847 10 6 5.6404 -1.7986 1.2633 11 6 4.2506 -1.8048 1.1819 12 6 3.4470 -2.4767 2.2267 13 8 2.2390 -2.5465 2.1131 14 7 4.0546 -3.0114 3.3044 15 6 3.2587 -3.6762 4.3391 16 6 3.1221 -2.8589 5.6366 17 7 3.3423 -4.1378 6.3443 18 6 3.0134 -4.6168 7.5843 19 1 3.2974 -5.6192 7.8688 20 6 2.3151 -3.8139 8.4756 21 7 1.9686 -2.5925 8.1289 22 14 1.8671 -4.4670 10.1675 23 1 2.3684 -5.8576 10.3099 24 1 2.4865 -3.6089 11.2093 25 1 0.3910 -4.4536 10.3284 26 6 4.0562 -4.6918 5.1774 27 1 -0.3634 0.0001 1.0277 28 1 -0.3633 0.8901 -0.5139 29 1 -0.3634 -0.8900 -0.5138 30 1 2.8773 1.2957 -0.8516 31 1 1.4914 2.0959 -0.0724 32 1 2.7687 1.3583 0.9240 33 1 3.9019 -0.0511 -1.7103 34 1 6.3548 -0.0564 -1.5389 35 1 7.4650 -1.1669 0.3512 36 1 6.1352 -2.2884 2.0889 37 1 5.0187 -2.9554 3.3952 38 1 2.3121 -4.0645 3.9634 39 1 3.9207 -2.1320 5.7842 40 1 2.1282 -2.4374 5.7876 41 1 1.4810 -2.0312 8.7519 42 1 3.8069 -5.7309 4.9625 43 1 5.1299 -4.5045 5.1897 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001031271500.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:42 Heat of formation + Delta-G solvation = 6.452487 kcal Electronic energy + Delta-G solvation = -26488.130577 eV Core-core repulsion = 22727.950314 eV Total energy + Delta-G solvation = -3760.180263 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.80455 -40.58790 -39.40928 -38.77558 -36.50159 -35.26241 -33.92698 -32.43463 -32.12738 -29.42938 -28.90450 -27.34638 -26.67873 -25.75377 -24.30035 -23.95445 -21.78447 -21.49149 -20.57619 -18.85743 -18.81063 -18.09051 -17.55829 -17.20054 -17.00383 -16.76486 -16.19581 -15.93879 -15.76421 -15.71312 -15.47779 -14.71195 -14.64440 -14.48247 -14.05311 -13.67786 -13.55919 -13.49343 -13.47796 -13.29529 -13.25547 -12.92907 -12.85396 -12.82131 -12.69614 -12.33542 -12.29950 -11.93524 -11.57828 -11.07945 -10.93899 -10.77058 -10.15512 -9.98898 -9.88079 -9.63894 -9.01719 -7.94922 -5.31030 -0.28802 0.17424 1.43530 1.46005 1.56285 1.64819 1.86968 2.03702 2.14401 2.47040 2.82285 3.21202 3.34531 3.46910 3.65742 3.78356 3.83390 4.09661 4.23810 4.27144 4.34545 4.37012 4.40863 4.45687 4.46379 4.67957 4.68806 4.69940 4.84405 4.85714 4.86994 4.92043 5.09225 5.18091 5.22135 5.30976 5.41484 5.43001 5.53580 5.64394 5.84576 5.85493 6.31671 6.54528 6.84422 7.15224 7.28296 7.54504 8.47144 9.22266 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.017418 B = 0.003234 C = 0.002922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.142232 B = 8655.263056 C = 9579.425733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.625 5.625 3 C 0.073 3.927 4 C 0.551 3.449 5 O -0.557 6.557 6 C -0.094 4.094 7 C -0.097 4.097 8 C -0.082 4.082 9 C -0.099 4.099 10 C -0.086 4.086 11 C -0.120 4.120 12 C 0.533 3.467 13 O -0.561 6.561 14 N -0.696 5.696 15 C 0.119 3.881 16 C 0.156 3.844 17 N -0.638 5.638 18 C -0.236 4.236 19 H 0.092 0.908 20 C -0.070 4.070 21 N -0.956 5.956 22 Si 0.985 3.015 23 H -0.260 1.260 24 H -0.289 1.289 25 H -0.294 1.294 26 C 0.125 3.875 27 H 0.037 0.963 28 H 0.111 0.889 29 H 0.055 0.945 30 H 0.089 0.911 31 H 0.103 0.897 32 H 0.049 0.951 33 H 0.155 0.845 34 H 0.177 0.823 35 H 0.173 0.827 36 H 0.152 0.848 37 H 0.414 0.586 38 H 0.082 0.918 39 H 0.030 0.970 40 H 0.029 0.971 41 H 0.249 0.751 42 H 0.063 0.937 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.291 10.803 -22.797 28.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.359 5.359 3 C -0.068 4.068 4 C 0.340 3.660 5 O -0.435 6.435 6 C -0.098 4.098 7 C -0.115 4.115 8 C -0.100 4.100 9 C -0.117 4.117 10 C -0.105 4.105 11 C -0.124 4.124 12 C 0.321 3.679 13 O -0.440 6.440 14 N -0.349 5.349 15 C 0.013 3.987 16 C 0.029 3.971 17 N -0.365 5.365 18 C -0.364 4.364 19 H 0.110 0.890 20 C -0.262 4.262 21 N -0.605 5.605 22 Si 0.812 3.188 23 H -0.184 1.184 24 H -0.216 1.216 25 H -0.222 1.222 26 C 0.000 4.000 27 H 0.056 0.944 28 H 0.129 0.871 29 H 0.074 0.926 30 H 0.107 0.893 31 H 0.122 0.878 32 H 0.068 0.932 33 H 0.173 0.827 34 H 0.194 0.806 35 H 0.191 0.809 36 H 0.169 0.831 37 H 0.252 0.748 38 H 0.100 0.900 39 H 0.047 0.953 40 H 0.047 0.953 41 H 0.057 0.943 42 H 0.082 0.918 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 10.960 10.178 -22.591 27.094 hybrid contribution -0.621 -0.273 1.553 1.695 sum 10.339 9.905 -21.039 25.448 Atomic orbital electron populations 1.21693 0.78747 1.03766 1.01322 1.47784 1.07588 1.06729 1.73805 1.22138 0.98131 0.83969 1.02565 1.18705 0.88158 0.83578 0.75597 1.90755 1.70408 1.32949 1.49367 1.19925 0.92377 1.00511 0.97009 1.21486 0.94916 0.97691 0.97419 1.21804 0.93255 0.96567 0.98326 1.21764 1.02211 0.95095 0.92601 1.21612 0.90423 0.98031 1.00427 1.19879 0.95136 1.02034 0.95341 1.19058 0.87693 0.78773 0.82367 1.90893 1.16012 1.59158 1.77967 1.45721 1.11266 1.57359 1.20523 1.23167 0.95452 0.94591 0.85539 1.22550 0.98163 0.89474 0.86878 1.46028 1.64320 1.13168 1.12988 1.19497 1.29448 0.98311 0.89133 0.89016 1.25747 1.01254 0.96488 1.02754 1.70055 1.44669 1.09241 1.36547 0.84919 0.77020 0.78075 0.78738 1.18419 1.21581 1.22163 1.23010 0.96232 0.96852 0.83947 0.94449 0.87062 0.92647 0.89266 0.87801 0.93215 0.82722 0.80609 0.80946 0.83054 0.74789 0.90011 0.95251 0.95277 0.94254 0.91844 0.90986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.12 10.45 127.77 1.34 3.46 16 2 N -0.62 -16.36 3.27 -875.25 -2.87 -19.23 16 3 C 0.07 1.12 9.54 127.77 1.22 2.34 16 4 C 0.55 18.66 5.70 86.82 0.49 19.16 16 5 O -0.56 -24.93 14.44 18.98 0.27 -24.65 16 6 C -0.09 -2.49 4.97 -19.87 -0.10 -2.59 16 7 C -0.10 -1.47 8.19 22.50 0.18 -1.28 16 8 C -0.08 -0.72 10.03 22.29 0.22 -0.50 16 9 C -0.10 -0.98 10.03 22.30 0.22 -0.76 16 10 C -0.09 -1.48 9.53 22.50 0.21 -1.27 16 11 C -0.12 -3.33 5.90 -19.87 -0.12 -3.45 16 12 C 0.53 20.04 7.74 86.82 0.67 20.71 16 13 O -0.56 -27.27 12.61 18.99 0.24 -27.03 16 14 N -0.70 -23.45 5.32 -450.15 -2.40 -25.84 16 15 C 0.12 5.07 4.40 46.75 0.21 5.27 16 16 C 0.16 8.07 7.33 86.44 0.63 8.71 16 17 N -0.64 -34.10 3.70 -716.56 -2.65 -36.75 16 18 C -0.24 -13.63 10.70 84.03 0.90 -12.73 16 19 H 0.09 4.98 7.83 -2.91 -0.02 4.95 16 20 C -0.07 -4.11 5.50 84.86 0.47 -3.64 16 21 N -0.96 -60.50 11.39 21.65 0.25 -60.26 16 22 Si 0.98 46.98 29.55 68.60 2.03 49.00 16 23 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 24 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 25 H -0.29 -14.17 7.11 99.48 0.71 -13.47 16 26 C 0.12 5.05 8.69 86.49 0.75 5.80 16 27 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.11 1.62 7.89 -2.38 -0.02 1.61 16 29 H 0.05 1.57 7.36 -2.39 -0.02 1.56 16 30 H 0.09 0.87 5.79 -2.38 -0.01 0.85 16 31 H 0.10 1.01 7.77 -2.39 -0.02 0.99 16 32 H 0.05 0.87 8.12 -2.39 -0.02 0.85 16 33 H 0.16 1.55 6.94 -2.91 -0.02 1.53 16 34 H 0.18 0.11 8.06 -2.91 -0.02 0.09 16 35 H 0.17 0.43 8.06 -2.91 -0.02 0.40 16 36 H 0.15 1.93 6.42 -2.91 -0.02 1.91 16 37 H 0.41 10.31 6.77 -92.71 -0.63 9.68 16 38 H 0.08 4.01 7.51 -2.39 -0.02 3.99 16 39 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.03 1.76 7.17 -2.38 -0.02 1.74 16 41 H 0.25 15.21 8.31 -92.71 -0.77 14.44 16 42 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 43 H 0.07 2.45 8.11 -2.39 -0.02 2.43 16 Total: -1.00 -93.33 356.83 2.59 -90.73 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: 0.41 Total: 14.79 kcal Atomic # 6 Polarization: 31.93 SS G_CDS: 7.31 Total: 39.24 kcal Atomic # 7 Polarization: -134.41 SS G_CDS: -7.67 Total: -142.08 kcal Atomic # 8 Polarization: -52.20 SS G_CDS: 0.51 Total: -51.68 kcal Atomic # 14 Polarization: 46.98 SS G_CDS: 2.03 Total: 49.00 kcal Total: -93.33 2.59 -90.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031271500.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.184 kcal (2) G-P(sol) polarization free energy of solvation -93.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds