Wall clock time and date at job start Tue Mar 31 2020 11:28:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46499 * 120.00051 * 2 1 4 4 C 1.34778 * 119.99973 * 179.97438 * 2 1 3 5 5 O 1.21545 * 120.00475 * 5.50085 * 4 2 1 6 6 C 1.47861 * 119.99774 * 185.49975 * 4 2 1 7 7 C 1.39712 * 120.07680 * 33.71406 * 6 4 2 8 8 C 1.38047 * 120.14904 * 179.97438 * 7 6 4 9 9 C 1.38107 * 120.29318 * 359.78942 * 8 7 6 10 10 C 1.39656 * 120.14725 * 0.46484 * 9 8 7 11 11 C 1.47864 * 120.07723 * 179.78782 * 10 9 8 12 12 O 1.21542 * 120.00157 * 179.72457 * 11 10 9 13 13 N 1.34773 * 119.99462 * 359.72495 * 11 10 9 14 14 C 1.46500 * 119.99714 * 180.02562 * 13 11 10 15 15 C 1.53946 * 113.74524 * 106.25969 * 14 13 11 16 16 N 1.47812 * 86.03546 * 90.88420 * 15 14 13 17 17 C 1.36938 * 134.45236 * 204.65019 * 16 15 14 18 18 H 1.07997 * 119.99912 * 179.86763 * 17 16 15 19 19 C 1.38813 * 120.00313 * 359.86407 * 17 16 15 20 20 N 1.31617 * 119.99635 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00081 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47452 * 59.99953 * 21 19 17 23 23 H 1.48500 * 109.47277 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.47281 * 299.99644 * 21 19 17 25 25 C 1.47581 * 91.05261 * 24.54864 * 16 15 14 26 26 C 1.39299 * 120.07498 * 213.73593 * 6 4 2 27 27 H 1.08997 * 109.47461 * 269.99568 * 1 2 3 28 28 H 1.09001 * 109.47610 * 30.00333 * 1 2 3 29 29 H 1.09002 * 109.47235 * 150.00286 * 1 2 3 30 30 H 1.09001 * 109.47642 * 185.32240 * 3 2 1 31 31 H 1.09003 * 109.47038 * 305.32265 * 3 2 1 32 32 H 1.09001 * 109.47186 * 65.32361 * 3 2 1 33 33 H 1.07997 * 119.92120 * 0.02562 * 7 6 4 34 34 H 1.08001 * 119.85249 * 180.02562 * 8 7 6 35 35 H 1.08005 * 119.92508 * 180.23256 * 9 8 7 36 36 H 0.97003 * 120.00533 * 0.02562 * 13 11 10 37 37 H 1.09001 * 112.94604 * 334.66446 * 14 13 11 38 38 H 1.09000 * 113.77125 * 205.14517 * 15 14 13 39 39 H 1.09000 * 113.76554 * 336.54189 * 15 14 13 40 40 H 0.97006 * 119.99582 * 179.97438 * 20 19 17 41 41 H 1.08999 * 113.76745 * 221.14820 * 25 16 15 42 42 H 1.09002 * 113.76612 * 89.75793 * 25 16 15 43 43 H 1.07999 * 120.13954 * 359.97438 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1388 -1.1672 0.0005 5 8 1.5354 -2.2175 -0.0999 6 6 3.6123 -1.1701 0.1233 7 6 4.2524 -0.1987 0.8971 8 6 5.6280 -0.2003 1.0131 9 6 6.3803 -1.1632 0.3696 10 6 5.7537 -2.1368 -0.4114 11 6 6.5610 -3.1642 -1.1035 12 8 6.0139 -4.0139 -1.7788 13 7 7.9035 -3.1585 -0.9854 14 6 8.7035 -4.1761 -1.6716 15 6 9.4633 -3.6430 -2.8998 16 7 10.5754 -3.3698 -1.9651 17 6 11.6330 -2.4999 -1.9611 18 1 12.3258 -2.4961 -1.1327 19 6 11.8146 -1.6231 -3.0218 20 7 10.9705 -1.6282 -4.0316 21 14 13.2577 -0.4371 -3.0166 22 1 14.5284 -1.2037 -2.9633 23 1 13.2275 0.3848 -4.2531 24 1 13.1649 0.4504 -1.8295 25 6 10.0869 -4.4084 -1.0374 26 6 4.3656 -2.1409 -0.5328 27 1 -0.3634 -0.0001 1.0276 28 1 -0.3634 0.8899 -0.5139 29 1 -0.3634 -0.8900 -0.5138 30 1 3.2653 1.0718 -0.0953 31 1 1.8646 1.8805 -0.8385 32 1 2.0076 1.7979 0.9338 33 1 3.6695 0.5545 1.4063 34 1 6.1177 0.5526 1.6129 35 1 7.4559 -1.1611 0.4675 36 1 8.3402 -2.4806 -0.4462 37 1 8.1488 -5.0946 -1.8634 38 1 9.6911 -4.4083 -3.6417 39 1 9.0221 -2.7458 -3.3339 40 1 11.0972 -1.0152 -4.7727 41 1 10.1428 -4.1212 0.0125 42 1 10.4982 -5.3991 -1.2312 43 1 3.8757 -2.8940 -1.1322 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031271750.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:46 Heat of formation + Delta-G solvation = 38.595198 kcal Electronic energy + Delta-G solvation = -25816.233142 eV Core-core repulsion = 22057.446692 eV Total energy + Delta-G solvation = -3758.786450 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.79022 -39.70169 -38.27478 -37.24855 -35.93232 -33.48701 -32.20715 -31.37304 -31.25710 -28.36253 -27.51082 -26.73088 -24.84938 -24.38652 -23.36254 -22.62699 -20.95349 -19.76293 -19.33426 -17.89166 -16.96073 -16.83799 -16.42729 -16.19565 -16.11136 -15.45916 -14.98387 -14.68986 -14.48854 -14.33890 -13.83506 -13.77412 -13.74005 -13.50397 -13.09000 -12.92312 -12.72682 -12.64407 -12.57628 -12.29947 -11.79421 -11.61551 -11.49972 -11.25339 -10.89091 -10.62402 -10.29567 -10.21572 -9.87836 -9.69396 -9.53227 -9.26944 -9.14005 -9.01360 -8.87646 -8.41839 -6.94498 -5.79921 -3.14078 0.51587 0.93942 2.41001 2.62293 3.06028 3.34778 3.39873 3.41540 3.46522 3.80835 4.14753 4.40777 4.49668 4.63239 4.74367 4.86627 4.91779 4.96531 5.01931 5.08800 5.17472 5.23351 5.32366 5.40753 5.44583 5.49164 5.55075 5.70170 5.96267 6.03848 6.07611 6.10832 6.13747 6.22071 6.36933 6.48868 6.54711 6.78208 6.95525 7.19268 7.30198 7.56531 7.84114 7.90799 7.96136 8.54783 8.99553 9.66359 10.54335 11.36113 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.018697 B = 0.002856 C = 0.002642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.169660 B = 9801.780656 C =10595.860179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.619 5.619 3 C 0.055 3.945 4 C 0.562 3.438 5 O -0.529 6.529 6 C -0.146 4.146 7 C -0.077 4.077 8 C -0.133 4.133 9 C -0.058 4.058 10 C -0.129 4.129 11 C 0.555 3.445 12 O -0.542 6.542 13 N -0.685 5.685 14 C 0.089 3.911 15 C 0.151 3.849 16 N -0.612 5.612 17 C -0.228 4.228 18 H 0.079 0.921 19 C -0.006 4.006 20 N -0.918 5.918 21 Si 0.911 3.089 22 H -0.285 1.285 23 H -0.290 1.290 24 H -0.285 1.285 25 C 0.111 3.889 26 C -0.005 4.005 27 H 0.055 0.945 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.098 0.902 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.139 0.861 34 H 0.137 0.863 35 H 0.136 0.864 36 H 0.403 0.597 37 H 0.091 0.909 38 H 0.037 0.963 39 H 0.077 0.923 40 H 0.254 0.746 41 H 0.047 0.953 42 H 0.048 0.952 43 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.797 7.329 11.835 21.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.353 5.353 3 C -0.087 4.087 4 C 0.351 3.649 5 O -0.406 6.406 6 C -0.150 4.150 7 C -0.096 4.096 8 C -0.151 4.151 9 C -0.077 4.077 10 C -0.132 4.132 11 C 0.342 3.658 12 O -0.420 6.420 13 N -0.334 5.334 14 C -0.017 4.017 15 C 0.025 3.975 16 N -0.339 5.339 17 C -0.355 4.355 18 H 0.097 0.903 19 C -0.203 4.203 20 N -0.564 5.564 21 Si 0.741 3.259 22 H -0.212 1.212 23 H -0.216 1.216 24 H -0.211 1.211 25 C -0.016 4.016 26 C -0.025 4.025 27 H 0.074 0.926 28 H 0.089 0.911 29 H 0.098 0.902 30 H 0.117 0.883 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.156 0.844 34 H 0.155 0.845 35 H 0.154 0.846 36 H 0.239 0.761 37 H 0.109 0.891 38 H 0.054 0.946 39 H 0.096 0.904 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -17.305 6.418 11.147 21.561 hybrid contribution 1.234 1.162 0.090 1.697 sum -16.071 7.580 11.237 21.023 Atomic orbital electron populations 1.21653 0.78672 1.03461 1.01950 1.47575 1.07221 1.06266 1.74215 1.22469 0.99173 0.85030 1.02059 1.18365 0.87070 0.83395 0.76086 1.90798 1.69746 1.31065 1.48960 1.19733 0.92786 0.98918 1.03523 1.21691 0.95149 0.96258 0.96452 1.21074 0.93410 0.99613 1.00954 1.21668 1.00743 0.92391 0.92888 1.20032 0.93951 0.98020 1.01190 1.18085 0.82363 0.84376 0.81023 1.90760 1.71728 1.38621 1.40919 1.45433 1.05197 1.32275 1.50513 1.22906 0.91345 0.90879 0.96559 1.22749 0.85387 0.98404 0.90967 1.46179 1.30241 1.37367 1.20150 1.18954 1.02538 1.10006 1.04047 0.90338 1.24794 0.98991 0.99967 0.96514 1.69822 1.37269 1.39739 1.09584 0.86229 0.82063 0.80697 0.76883 1.21212 1.21592 1.21108 1.22917 0.90048 0.93469 0.95139 1.21302 0.92069 0.95006 0.94131 0.92594 0.91071 0.90225 0.88346 0.91645 0.91826 0.84364 0.84515 0.84582 0.76147 0.89064 0.94559 0.90438 0.93548 0.93458 0.93464 0.83629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.62 10.52 59.84 0.63 1.25 16 2 N -0.62 -5.69 3.27 -190.64 -0.62 -6.31 16 3 C 0.06 0.32 9.01 59.85 0.54 0.86 16 4 C 0.56 7.15 7.38 -12.32 -0.09 7.05 16 5 O -0.53 -8.67 16.34 5.33 0.09 -8.58 16 6 C -0.15 -1.75 5.34 -105.01 -0.56 -2.31 16 7 C -0.08 -0.68 7.33 -39.10 -0.29 -0.97 16 8 C -0.13 -1.17 10.02 -39.70 -0.40 -1.57 16 9 C -0.06 -0.66 9.54 -39.10 -0.37 -1.03 16 10 C -0.13 -1.85 5.87 -105.02 -0.62 -2.47 16 11 C 0.56 9.78 7.77 -12.32 -0.10 9.68 16 12 O -0.54 -11.29 15.96 5.33 0.09 -11.20 16 13 N -0.68 -11.90 5.32 -56.28 -0.30 -12.20 16 14 C 0.09 1.71 4.40 -70.15 -0.31 1.41 16 15 C 0.15 3.57 7.33 -2.84 -0.02 3.55 16 16 N -0.61 -15.01 3.70 -177.88 -0.66 -15.67 16 17 C -0.23 -6.13 10.70 -15.06 -0.16 -6.29 16 18 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 19 C -0.01 -0.16 5.50 -17.43 -0.10 -0.25 16 20 N -0.92 -26.75 11.39 55.49 0.63 -26.12 16 21 Si 0.91 21.51 29.55 -169.99 -5.02 16.49 16 22 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 24 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 25 C 0.11 2.15 8.68 -2.97 -0.03 2.13 16 26 C -0.01 -0.08 9.15 -38.78 -0.35 -0.43 16 27 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.07 0.35 8.07 -51.93 -0.42 -0.07 16 29 H 0.08 0.71 7.35 -51.93 -0.38 0.33 16 30 H 0.10 0.61 4.14 -51.93 -0.21 0.40 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.24 8.04 -51.93 -0.42 -0.18 16 33 H 0.14 0.82 5.81 -52.49 -0.31 0.51 16 34 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 35 H 0.14 1.40 6.39 -52.48 -0.34 1.07 16 36 H 0.40 6.41 6.76 -40.82 -0.28 6.13 16 37 H 0.09 1.72 7.51 -51.93 -0.39 1.33 16 38 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.08 2.06 7.17 -51.93 -0.37 1.68 16 40 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 41 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 42 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 43 H 0.15 2.32 7.57 -52.49 -0.40 1.93 16 LS Contribution 359.11 15.07 5.41 5.41 Total: -1.00 -35.16 359.11 -8.20 -43.36 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -5.59 Total: 4.22 kcal Atomic # 6 Polarization: 12.82 SS G_CDS: -2.22 Total: 10.61 kcal Atomic # 7 Polarization: -59.36 SS G_CDS: -0.95 Total: -60.31 kcal Atomic # 8 Polarization: -19.95 SS G_CDS: 0.17 Total: -19.78 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -35.16 -8.20 -43.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031271750.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.951 kcal (2) G-P(sol) polarization free energy of solvation -35.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.356 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds