Wall clock time and date at job start Tue Mar 31 2020 11:28:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46499 * 120.00051 * 2 1 4 4 C 1.34778 * 119.99973 * 179.97438 * 2 1 3 5 5 O 1.21545 * 120.00475 * 5.50085 * 4 2 1 6 6 C 1.47861 * 119.99774 * 185.49975 * 4 2 1 7 7 C 1.39712 * 120.07680 * 33.71406 * 6 4 2 8 8 C 1.38047 * 120.14904 * 179.97438 * 7 6 4 9 9 C 1.38107 * 120.29318 * 359.78942 * 8 7 6 10 10 C 1.39656 * 120.14725 * 0.46484 * 9 8 7 11 11 C 1.47864 * 120.07723 * 179.78782 * 10 9 8 12 12 O 1.21542 * 120.00157 * 179.72457 * 11 10 9 13 13 N 1.34773 * 119.99462 * 359.72495 * 11 10 9 14 14 C 1.46500 * 119.99714 * 180.02562 * 13 11 10 15 15 C 1.53946 * 113.74524 * 106.25969 * 14 13 11 16 16 N 1.47812 * 86.03546 * 90.88420 * 15 14 13 17 17 C 1.36938 * 134.45236 * 204.65019 * 16 15 14 18 18 H 1.07997 * 119.99912 * 179.86763 * 17 16 15 19 19 C 1.38813 * 120.00313 * 359.86407 * 17 16 15 20 20 N 1.31617 * 119.99635 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00081 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47452 * 59.99953 * 21 19 17 23 23 H 1.48500 * 109.47277 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.47281 * 299.99644 * 21 19 17 25 25 C 1.47581 * 91.05261 * 24.54864 * 16 15 14 26 26 C 1.39299 * 120.07498 * 213.73593 * 6 4 2 27 27 H 1.08997 * 109.47461 * 269.99568 * 1 2 3 28 28 H 1.09001 * 109.47610 * 30.00333 * 1 2 3 29 29 H 1.09002 * 109.47235 * 150.00286 * 1 2 3 30 30 H 1.09001 * 109.47642 * 185.32240 * 3 2 1 31 31 H 1.09003 * 109.47038 * 305.32265 * 3 2 1 32 32 H 1.09001 * 109.47186 * 65.32361 * 3 2 1 33 33 H 1.07997 * 119.92120 * 0.02562 * 7 6 4 34 34 H 1.08001 * 119.85249 * 180.02562 * 8 7 6 35 35 H 1.08005 * 119.92508 * 180.23256 * 9 8 7 36 36 H 0.97003 * 120.00533 * 0.02562 * 13 11 10 37 37 H 1.09001 * 112.94604 * 334.66446 * 14 13 11 38 38 H 1.09000 * 113.77125 * 205.14517 * 15 14 13 39 39 H 1.09000 * 113.76554 * 336.54189 * 15 14 13 40 40 H 0.97006 * 119.99582 * 179.97438 * 20 19 17 41 41 H 1.08999 * 113.76745 * 221.14820 * 25 16 15 42 42 H 1.09002 * 113.76612 * 89.75793 * 25 16 15 43 43 H 1.07999 * 120.13954 * 359.97438 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1388 -1.1672 0.0005 5 8 1.5354 -2.2175 -0.0999 6 6 3.6123 -1.1701 0.1233 7 6 4.2524 -0.1987 0.8971 8 6 5.6280 -0.2003 1.0131 9 6 6.3803 -1.1632 0.3696 10 6 5.7537 -2.1368 -0.4114 11 6 6.5610 -3.1642 -1.1035 12 8 6.0139 -4.0139 -1.7788 13 7 7.9035 -3.1585 -0.9854 14 6 8.7035 -4.1761 -1.6716 15 6 9.4633 -3.6430 -2.8998 16 7 10.5754 -3.3698 -1.9651 17 6 11.6330 -2.4999 -1.9611 18 1 12.3258 -2.4961 -1.1327 19 6 11.8146 -1.6231 -3.0218 20 7 10.9705 -1.6282 -4.0316 21 14 13.2577 -0.4371 -3.0166 22 1 14.5284 -1.2037 -2.9633 23 1 13.2275 0.3848 -4.2531 24 1 13.1649 0.4504 -1.8295 25 6 10.0869 -4.4084 -1.0374 26 6 4.3656 -2.1409 -0.5328 27 1 -0.3634 -0.0001 1.0276 28 1 -0.3634 0.8899 -0.5139 29 1 -0.3634 -0.8900 -0.5138 30 1 3.2653 1.0718 -0.0953 31 1 1.8646 1.8805 -0.8385 32 1 2.0076 1.7979 0.9338 33 1 3.6695 0.5545 1.4063 34 1 6.1177 0.5526 1.6129 35 1 7.4559 -1.1611 0.4675 36 1 8.3402 -2.4806 -0.4462 37 1 8.1488 -5.0946 -1.8634 38 1 9.6911 -4.4083 -3.6417 39 1 9.0221 -2.7458 -3.3339 40 1 11.0972 -1.0152 -4.7727 41 1 10.1428 -4.1212 0.0125 42 1 10.4982 -5.3991 -1.2312 43 1 3.8757 -2.8940 -1.1322 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001031271750.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:45 Heat of formation + Delta-G solvation = 13.492944 kcal Electronic energy + Delta-G solvation = -25817.321657 eV Core-core repulsion = 22057.446692 eV Total energy + Delta-G solvation = -3759.874966 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.77230 -41.00416 -39.56730 -38.65708 -36.75998 -35.09033 -33.90773 -32.54960 -32.18689 -29.55676 -28.81620 -27.47225 -26.60412 -25.74645 -24.53584 -23.90249 -22.07684 -21.00826 -20.78319 -18.96052 -18.73812 -17.85630 -17.52923 -17.12807 -17.05601 -16.86312 -16.65682 -16.02125 -15.65408 -15.62723 -15.31780 -14.91236 -14.64718 -14.57525 -14.42137 -14.23013 -13.75916 -13.55461 -13.40818 -13.26713 -13.18185 -13.02142 -12.72748 -12.61506 -12.44041 -12.32512 -12.12397 -11.73815 -11.39424 -11.25179 -11.07901 -10.85234 -10.18406 -10.15848 -9.88109 -9.72776 -8.93838 -7.86822 -5.22305 -0.40244 -0.02610 1.45221 1.48214 1.51575 1.57726 1.81495 1.95086 2.15298 2.49165 2.75413 3.27403 3.35655 3.41897 3.57534 3.80273 3.86168 3.94939 4.04308 4.26088 4.27094 4.38363 4.45851 4.51322 4.52198 4.63984 4.73269 4.79076 4.84169 4.87499 4.90882 4.92794 5.06040 5.13152 5.18545 5.22408 5.26051 5.41979 5.49331 5.66126 5.72600 5.91817 6.18901 6.54308 6.91361 6.96552 7.15922 7.62924 8.56366 9.29107 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.018697 B = 0.002856 C = 0.002642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.169660 B = 9801.780656 C =10595.860179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.612 5.612 3 C 0.047 3.953 4 C 0.552 3.448 5 O -0.583 6.583 6 C -0.154 4.154 7 C -0.052 4.052 8 C -0.117 4.117 9 C -0.056 4.056 10 C -0.151 4.151 11 C 0.553 3.447 12 O -0.585 6.585 13 N -0.679 5.679 14 C 0.109 3.891 15 C 0.146 3.854 16 N -0.634 5.634 17 C -0.231 4.231 18 H 0.091 0.909 19 C -0.067 4.067 20 N -0.955 5.955 21 Si 0.979 3.021 22 H -0.281 1.281 23 H -0.301 1.301 24 H -0.269 1.269 25 C 0.121 3.879 26 C -0.026 4.026 27 H 0.070 0.930 28 H 0.101 0.899 29 H 0.054 0.946 30 H 0.095 0.905 31 H 0.079 0.921 32 H 0.097 0.903 33 H 0.180 0.820 34 H 0.182 0.818 35 H 0.148 0.852 36 H 0.411 0.589 37 H 0.096 0.904 38 H 0.022 0.978 39 H 0.041 0.959 40 H 0.246 0.754 41 H 0.074 0.926 42 H 0.065 0.935 43 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.408 10.363 15.036 24.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.344 5.344 3 C -0.094 4.094 4 C 0.342 3.658 5 O -0.464 6.464 6 C -0.157 4.157 7 C -0.070 4.070 8 C -0.134 4.134 9 C -0.074 4.074 10 C -0.154 4.154 11 C 0.342 3.658 12 O -0.466 6.466 13 N -0.329 5.329 14 C 0.002 3.998 15 C 0.019 3.981 16 N -0.361 5.361 17 C -0.359 4.359 18 H 0.108 0.892 19 C -0.260 4.260 20 N -0.603 5.603 21 Si 0.807 3.193 22 H -0.207 1.207 23 H -0.227 1.227 24 H -0.194 1.194 25 C -0.004 4.004 26 C -0.047 4.047 27 H 0.088 0.912 28 H 0.120 0.880 29 H 0.073 0.927 30 H 0.113 0.887 31 H 0.098 0.902 32 H 0.116 0.884 33 H 0.197 0.803 34 H 0.199 0.801 35 H 0.166 0.834 36 H 0.249 0.751 37 H 0.114 0.886 38 H 0.040 0.960 39 H 0.059 0.941 40 H 0.055 0.945 41 H 0.092 0.908 42 H 0.083 0.917 43 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -16.910 9.494 14.407 24.159 hybrid contribution 1.022 0.273 -0.867 1.368 sum -15.888 9.767 13.539 23.046 Atomic orbital electron populations 1.21820 0.77660 1.03752 1.02970 1.47749 1.08114 1.06380 1.72131 1.22752 0.98571 0.83531 1.04548 1.18606 0.87453 0.83806 0.75977 1.90766 1.70680 1.33153 1.51788 1.19766 0.92481 0.99348 1.04104 1.22134 0.95573 0.95123 0.94164 1.21555 0.93159 0.99043 0.99647 1.21877 1.01566 0.91915 0.92088 1.19748 0.93440 0.98856 1.03324 1.18658 0.82374 0.84449 0.80330 1.90727 1.72438 1.40563 1.42897 1.45341 1.05132 1.32163 1.50264 1.22573 0.91658 0.91133 0.94393 1.22644 0.86521 0.96673 0.92251 1.46451 1.29834 1.38518 1.21343 1.19404 1.02708 1.09818 1.03988 0.89172 1.25640 1.01705 1.02181 0.96503 1.70045 1.39272 1.40760 1.10264 0.85153 0.78878 0.78555 0.76712 1.20741 1.22743 1.19433 1.23051 0.88840 0.92918 0.95600 1.21102 0.92431 0.95740 0.95382 0.91191 0.88005 0.92705 0.88667 0.90211 0.88440 0.80321 0.80077 0.83425 0.75110 0.88573 0.95989 0.94066 0.94517 0.90775 0.91705 0.87044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.04 10.52 127.77 1.34 2.38 16 2 N -0.61 -10.04 3.27 -875.35 -2.87 -12.91 16 3 C 0.05 0.35 9.01 127.77 1.15 1.50 16 4 C 0.55 14.07 7.38 86.79 0.64 14.71 16 5 O -0.58 -20.32 16.34 -3.86 -0.06 -20.38 16 6 C -0.15 -3.59 5.34 -20.12 -0.11 -3.70 16 7 C -0.05 -0.72 7.33 22.58 0.17 -0.55 16 8 C -0.12 -1.54 10.02 22.19 0.22 -1.32 16 9 C -0.06 -1.14 9.54 22.58 0.22 -0.93 16 10 C -0.15 -4.40 5.87 -20.12 -0.12 -4.52 16 11 C 0.55 20.29 7.77 86.79 0.67 20.96 16 12 O -0.58 -26.02 15.96 -3.85 -0.06 -26.08 16 13 N -0.68 -23.76 5.32 -450.27 -2.40 -26.16 16 14 C 0.11 4.24 4.40 46.75 0.21 4.44 16 15 C 0.15 7.14 7.33 86.44 0.63 7.77 16 16 N -0.63 -30.99 3.70 -716.70 -2.65 -33.65 16 17 C -0.23 -12.28 10.70 84.03 0.90 -11.38 16 18 H 0.09 4.47 7.83 -2.91 -0.02 4.45 16 19 C -0.07 -3.72 5.50 84.86 0.47 -3.26 16 20 N -0.95 -57.22 11.39 21.65 0.25 -56.97 16 21 Si 0.98 44.14 29.55 68.60 2.03 46.17 16 22 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 23 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 24 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 25 C 0.12 4.51 8.68 86.49 0.75 5.26 16 26 C -0.03 -0.80 9.15 22.79 0.21 -0.59 16 27 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.10 0.69 8.07 -2.39 -0.02 0.67 16 29 H 0.05 1.01 7.35 -2.39 -0.02 0.99 16 30 H 0.10 0.78 4.14 -2.39 -0.01 0.77 16 31 H 0.08 0.44 8.14 -2.39 -0.02 0.43 16 32 H 0.10 0.16 8.04 -2.39 -0.02 0.14 16 33 H 0.18 1.06 5.81 -2.91 -0.02 1.04 16 34 H 0.18 0.92 8.06 -2.91 -0.02 0.90 16 35 H 0.15 2.65 6.39 -2.91 -0.02 2.63 16 36 H 0.41 12.74 6.76 -92.71 -0.63 12.11 16 37 H 0.10 3.68 7.51 -2.39 -0.02 3.66 16 38 H 0.02 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.04 2.30 7.17 -2.39 -0.02 2.28 16 40 H 0.25 14.50 8.31 -92.70 -0.77 13.73 16 41 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 42 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 43 H 0.11 4.05 7.57 -2.91 -0.02 4.03 16 Total: -1.00 -82.42 359.11 2.01 -80.42 By element: Atomic # 1 Polarization: 18.34 SS G_CDS: 0.42 Total: 18.76 kcal Atomic # 6 Polarization: 23.45 SS G_CDS: 7.35 Total: 30.80 kcal Atomic # 7 Polarization: -122.02 SS G_CDS: -7.67 Total: -129.69 kcal Atomic # 8 Polarization: -46.33 SS G_CDS: -0.12 Total: -46.46 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Total: -82.42 2.01 -80.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031271750.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.908 kcal (2) G-P(sol) polarization free energy of solvation -82.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.415 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds