Wall clock time and date at job start Tue Mar 31 2020 11:06:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21272 * 119.99880 * 2 1 4 4 N 1.34777 * 119.99792 * 180.02562 * 2 1 3 5 5 C 1.46499 * 119.99606 * 179.97438 * 4 2 1 6 6 C 1.50700 * 109.46895 * 179.97438 * 5 4 2 7 7 C 1.38381 * 119.93234 * 269.97485 * 6 5 4 8 8 C 1.38333 * 120.29342 * 180.02562 * 7 6 5 9 9 C 1.37981 * 120.14688 * 359.70525 * 8 7 6 10 10 C 1.39561 * 119.84891 * 0.57164 * 9 8 7 11 11 C 1.47846 * 120.14157 * 179.72691 * 10 9 8 12 12 O 1.21553 * 119.99659 * 179.71995 * 11 10 9 13 13 N 1.34768 * 120.00161 * 359.72404 * 11 10 9 14 14 C 1.46503 * 120.00164 * 179.97438 * 13 11 10 15 15 C 1.53950 * 113.74146 * 106.26045 * 14 13 11 16 16 N 1.47805 * 86.03824 * 90.88395 * 15 14 13 17 17 C 1.36942 * 134.45487 * 204.64668 * 16 15 14 18 18 H 1.08002 * 119.99602 * 179.86453 * 17 16 15 19 19 C 1.38807 * 120.00184 * 359.86555 * 17 16 15 20 20 N 1.31617 * 119.99858 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00250 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47017 * 89.99413 * 21 19 17 23 23 H 1.48498 * 109.47093 * 210.00245 * 21 19 17 24 24 H 1.48508 * 109.46865 * 329.99904 * 21 19 17 25 25 C 1.47582 * 91.05413 * 24.54887 * 16 15 14 26 26 C 1.37942 * 119.92373 * 90.00306 * 6 5 4 27 27 H 1.08997 * 109.47011 * 239.99590 * 1 2 3 28 28 H 1.08997 * 109.47251 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.47285 * 120.00345 * 1 2 3 30 30 H 0.97001 * 120.00253 * 359.97438 * 4 2 1 31 31 H 1.09005 * 109.47127 * 59.99747 * 5 4 2 32 32 H 1.08997 * 109.47194 * 299.99633 * 5 4 2 33 33 H 1.07998 * 119.85143 * 0.02562 * 7 6 5 34 34 H 1.08003 * 119.92923 * 179.97438 * 8 7 6 35 35 H 1.07996 * 120.07450 * 180.27860 * 9 8 7 36 36 H 0.97006 * 120.00313 * 0.02562 * 13 11 10 37 37 H 1.09002 * 112.94232 * 334.66719 * 14 13 11 38 38 H 1.08999 * 113.76704 * 205.15172 * 15 14 13 39 39 H 1.09002 * 113.76463 * 336.53966 * 15 14 13 40 40 H 0.97002 * 120.00155 * 180.02562 * 20 19 17 41 41 H 1.08999 * 113.77186 * 221.15323 * 25 16 15 42 42 H 1.09004 * 113.76624 * 89.74800 * 25 16 15 43 43 H 1.07999 * 120.07546 * 0.02562 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6459 -1.1672 -0.0011 6 6 4.1482 -2.5880 -0.0010 7 6 4.3793 -3.2386 1.1983 8 6 4.8409 -4.5426 1.2072 9 6 5.0682 -5.2053 0.0184 10 6 4.8427 -4.5531 -1.1946 11 6 5.0898 -5.2550 -2.4721 12 8 4.8877 -4.6861 -3.5271 13 7 5.5391 -6.5256 -2.4669 14 6 5.7835 -7.2213 -3.7328 15 6 7.2762 -7.3860 -4.0715 16 7 7.1910 -8.6762 -3.3553 17 6 8.0953 -9.4756 -2.7084 18 1 7.7699 -10.3978 -2.2501 19 6 9.4301 -9.1006 -2.6417 20 7 9.8265 -7.9764 -3.1998 21 14 10.6638 -10.1913 -1.7598 22 1 11.2422 -11.1630 -2.7223 23 1 11.7489 -9.3520 -1.1912 24 1 9.9809 -10.9261 -0.6647 25 6 5.7404 -8.7557 -3.6152 26 6 4.3772 -3.2370 -1.1964 27 1 -0.3633 -0.5139 0.8899 28 1 -0.3633 1.0276 0.0005 29 1 -0.3634 -0.5139 -0.8900 30 1 1.6959 -2.0073 -0.0005 31 1 4.0096 -0.6535 0.8889 32 1 4.0089 -0.6532 -0.8911 33 1 4.1985 -2.7259 2.1315 34 1 5.0197 -5.0446 2.1466 35 1 5.4243 -6.2248 0.0267 36 1 5.7000 -6.9797 -1.6250 37 1 5.1875 -6.8274 -4.5561 38 1 7.4760 -7.4880 -5.1381 39 1 7.9204 -6.6537 -3.5848 40 1 10.7593 -7.7145 -3.1535 41 1 5.1608 -9.1150 -2.7649 42 1 5.4882 -9.2609 -4.5476 43 1 4.1972 -2.7279 -2.1318 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031409720.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:14 Heat of formation + Delta-G solvation = 7.910143 kcal Electronic energy + Delta-G solvation = -25312.108842 eV Core-core repulsion = 21551.991788 eV Total energy + Delta-G solvation = -3760.117054 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.38087 -39.73970 -38.70897 -37.36086 -35.22336 -33.45209 -32.22197 -31.67000 -31.12319 -29.91547 -27.58952 -26.00876 -24.87200 -24.39888 -22.73381 -21.99657 -20.93134 -20.22231 -19.35371 -17.86057 -16.96846 -16.84844 -16.31917 -16.25627 -16.00840 -15.56390 -15.01493 -14.92021 -14.56975 -14.41550 -13.83909 -13.78598 -13.71670 -13.31299 -13.20054 -12.91942 -12.75262 -12.63483 -12.49993 -12.32620 -11.80910 -11.65459 -11.32104 -11.24420 -10.91441 -10.60873 -10.31634 -10.29738 -9.88575 -9.71894 -9.55185 -9.42292 -9.13923 -9.10683 -8.89113 -8.43754 -6.95928 -5.81254 -3.15541 0.71754 1.06674 2.34220 2.77641 3.16770 3.34287 3.39156 3.41821 3.44658 3.84468 4.30140 4.39641 4.53282 4.60839 4.70835 4.90126 4.95113 4.99514 5.04507 5.05990 5.11751 5.34817 5.40468 5.43159 5.51206 5.52609 5.63684 5.77085 6.03795 6.05259 6.16499 6.17276 6.19078 6.25058 6.34836 6.46705 6.64462 6.76335 7.17349 7.17590 7.28344 7.55179 7.89424 7.90207 7.94731 8.52779 8.98310 9.65149 10.52634 11.34882 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.022585 B = 0.002476 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.474830 B =11306.691144 C =11882.360372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.509 3.491 3 O -0.548 6.548 4 N -0.727 5.727 5 C 0.162 3.838 6 C -0.124 4.124 7 C -0.081 4.081 8 C -0.127 4.127 9 C -0.074 4.074 10 C -0.125 4.125 11 C 0.554 3.446 12 O -0.546 6.546 13 N -0.685 5.685 14 C 0.089 3.911 15 C 0.151 3.849 16 N -0.612 5.612 17 C -0.228 4.228 18 H 0.079 0.921 19 C -0.006 4.006 20 N -0.917 5.917 21 Si 0.911 3.089 22 H -0.289 1.289 23 H -0.290 1.290 24 H -0.281 1.281 25 C 0.111 3.889 26 C -0.043 4.043 27 H 0.087 0.913 28 H 0.092 0.908 29 H 0.089 0.911 30 H 0.403 0.597 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.126 0.874 34 H 0.131 0.869 35 H 0.132 0.868 36 H 0.403 0.597 37 H 0.091 0.909 38 H 0.037 0.963 39 H 0.077 0.923 40 H 0.254 0.746 41 H 0.047 0.953 42 H 0.048 0.952 43 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.872 9.881 9.743 22.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.296 3.704 3 O -0.426 6.426 4 N -0.380 5.380 5 C 0.039 3.961 6 C -0.125 4.125 7 C -0.099 4.099 8 C -0.145 4.145 9 C -0.093 4.093 10 C -0.128 4.128 11 C 0.341 3.659 12 O -0.425 6.425 13 N -0.334 5.334 14 C -0.017 4.017 15 C 0.025 3.975 16 N -0.339 5.339 17 C -0.355 4.355 18 H 0.097 0.903 19 C -0.203 4.203 20 N -0.564 5.564 21 Si 0.741 3.259 22 H -0.216 1.216 23 H -0.216 1.216 24 H -0.206 1.206 25 C -0.016 4.016 26 C -0.062 4.062 27 H 0.106 0.894 28 H 0.110 0.890 29 H 0.107 0.893 30 H 0.238 0.762 31 H 0.096 0.904 32 H 0.097 0.903 33 H 0.144 0.856 34 H 0.149 0.851 35 H 0.150 0.850 36 H 0.239 0.761 37 H 0.109 0.891 38 H 0.054 0.946 39 H 0.096 0.904 40 H 0.064 0.936 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -17.241 10.945 9.100 22.358 hybrid contribution 0.866 -1.509 0.744 1.892 sum -16.376 9.436 9.843 21.309 Atomic orbital electron populations 1.21922 0.91548 1.05568 1.04361 1.20850 0.90676 0.83359 0.75499 1.90735 1.70907 1.31427 1.49490 1.46167 1.07069 1.08989 1.75784 1.20175 0.79819 0.92633 1.03431 1.19749 1.03539 0.95846 0.93328 1.21237 0.96673 0.94607 0.97427 1.21116 1.00272 0.94861 0.98252 1.21520 0.95916 1.00076 0.91752 1.20073 1.03832 0.95469 0.93422 1.18168 0.77435 0.81787 0.88508 1.90744 1.53153 1.66264 1.32379 1.45454 1.64951 1.12969 1.10031 1.22903 1.00205 0.92977 0.85607 1.22748 0.90681 0.88813 0.95298 1.46181 1.02655 1.23313 1.61767 1.18997 0.88030 1.01800 1.26697 0.90277 1.24799 0.96843 0.97741 1.00908 1.69827 1.15725 1.22617 1.48237 0.86150 0.81201 0.79456 0.79083 1.21602 1.21642 1.20638 1.22917 0.87989 0.92183 0.98492 1.21186 0.93936 0.92885 0.98208 0.89396 0.88952 0.89261 0.76238 0.90422 0.90289 0.85580 0.85112 0.85008 0.76127 0.89132 0.94576 0.90440 0.93566 0.93489 0.93490 0.84487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.87 10.32 36.01 0.37 -0.50 16 2 C 0.51 4.65 7.94 -10.98 -0.09 4.57 16 3 O -0.55 -7.58 17.08 5.56 0.10 -7.48 16 4 N -0.73 -5.59 5.55 -61.47 -0.34 -5.93 16 5 C 0.16 1.46 5.79 -5.19 -0.03 1.43 16 6 C -0.12 -1.18 5.24 -104.68 -0.55 -1.73 16 7 C -0.08 -0.68 9.69 -39.49 -0.38 -1.07 16 8 C -0.13 -1.16 10.03 -39.64 -0.40 -1.56 16 9 C -0.07 -0.83 9.54 -39.18 -0.37 -1.21 16 10 C -0.12 -1.68 5.87 -104.97 -0.62 -2.30 16 11 C 0.55 9.37 7.77 -12.33 -0.10 9.28 16 12 O -0.55 -10.85 15.97 5.32 0.08 -10.76 16 13 N -0.68 -11.70 5.32 -56.28 -0.30 -12.00 16 14 C 0.09 1.69 4.40 -70.14 -0.31 1.38 16 15 C 0.15 3.55 7.33 -2.84 -0.02 3.52 16 16 N -0.61 -14.96 3.70 -177.87 -0.66 -15.62 16 17 C -0.23 -6.13 10.70 -15.06 -0.16 -6.29 16 18 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 19 C -0.01 -0.16 5.50 -17.43 -0.10 -0.26 16 20 N -0.92 -26.87 11.39 55.49 0.63 -26.24 16 21 Si 0.91 21.61 29.55 -169.99 -5.02 16.59 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 25 C 0.11 2.13 8.68 -2.96 -0.03 2.10 16 26 C -0.04 -0.51 9.24 -39.18 -0.36 -0.87 16 27 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.09 0.49 8.12 -51.93 -0.42 0.07 16 29 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.40 2.24 8.46 -40.82 -0.35 1.89 16 31 H 0.08 0.69 8.08 -51.93 -0.42 0.27 16 32 H 0.08 0.80 8.08 -51.93 -0.42 0.38 16 33 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 34 H 0.13 0.91 8.06 -52.48 -0.42 0.49 16 35 H 0.13 1.41 6.41 -52.49 -0.34 1.07 16 36 H 0.40 6.40 6.77 -40.82 -0.28 6.12 16 37 H 0.09 1.66 7.51 -51.93 -0.39 1.27 16 38 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.08 2.06 7.16 -51.93 -0.37 1.68 16 40 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 41 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.14 1.72 7.65 -52.49 -0.40 1.32 16 LS Contribution 369.17 15.07 5.56 5.56 Total: -1.00 -34.97 369.17 -8.97 -43.95 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -5.89 Total: 5.45 kcal Atomic # 6 Polarization: 9.64 SS G_CDS: -3.14 Total: 6.50 kcal Atomic # 7 Polarization: -59.13 SS G_CDS: -0.67 Total: -59.80 kcal Atomic # 8 Polarization: -18.43 SS G_CDS: 0.18 Total: -18.25 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.97 -8.97 -43.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031409720.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.855 kcal (2) G-P(sol) polarization free energy of solvation -34.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.945 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds