Wall clock time and date at job start Tue Mar 31 2020 11:06:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21272 * 119.99880 * 2 1 4 4 N 1.34777 * 119.99792 * 180.02562 * 2 1 3 5 5 C 1.46499 * 119.99606 * 179.97438 * 4 2 1 6 6 C 1.50700 * 109.46895 * 179.97438 * 5 4 2 7 7 C 1.38381 * 119.93234 * 269.97485 * 6 5 4 8 8 C 1.38333 * 120.29342 * 180.02562 * 7 6 5 9 9 C 1.37981 * 120.14688 * 359.70525 * 8 7 6 10 10 C 1.39561 * 119.84891 * 0.57164 * 9 8 7 11 11 C 1.47846 * 120.14157 * 179.72691 * 10 9 8 12 12 O 1.21553 * 119.99659 * 179.71995 * 11 10 9 13 13 N 1.34768 * 120.00161 * 359.72404 * 11 10 9 14 14 C 1.46503 * 120.00164 * 179.97438 * 13 11 10 15 15 C 1.53950 * 113.74146 * 106.26045 * 14 13 11 16 16 N 1.47805 * 86.03824 * 90.88395 * 15 14 13 17 17 C 1.36942 * 134.45487 * 204.64668 * 16 15 14 18 18 H 1.08002 * 119.99602 * 179.86453 * 17 16 15 19 19 C 1.38807 * 120.00184 * 359.86555 * 17 16 15 20 20 N 1.31617 * 119.99858 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00250 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47017 * 89.99413 * 21 19 17 23 23 H 1.48498 * 109.47093 * 210.00245 * 21 19 17 24 24 H 1.48508 * 109.46865 * 329.99904 * 21 19 17 25 25 C 1.47582 * 91.05413 * 24.54887 * 16 15 14 26 26 C 1.37942 * 119.92373 * 90.00306 * 6 5 4 27 27 H 1.08997 * 109.47011 * 239.99590 * 1 2 3 28 28 H 1.08997 * 109.47251 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.47285 * 120.00345 * 1 2 3 30 30 H 0.97001 * 120.00253 * 359.97438 * 4 2 1 31 31 H 1.09005 * 109.47127 * 59.99747 * 5 4 2 32 32 H 1.08997 * 109.47194 * 299.99633 * 5 4 2 33 33 H 1.07998 * 119.85143 * 0.02562 * 7 6 5 34 34 H 1.08003 * 119.92923 * 179.97438 * 8 7 6 35 35 H 1.07996 * 120.07450 * 180.27860 * 9 8 7 36 36 H 0.97006 * 120.00313 * 0.02562 * 13 11 10 37 37 H 1.09002 * 112.94232 * 334.66719 * 14 13 11 38 38 H 1.08999 * 113.76704 * 205.15172 * 15 14 13 39 39 H 1.09002 * 113.76463 * 336.53966 * 15 14 13 40 40 H 0.97002 * 120.00155 * 180.02562 * 20 19 17 41 41 H 1.08999 * 113.77186 * 221.15323 * 25 16 15 42 42 H 1.09004 * 113.76624 * 89.74800 * 25 16 15 43 43 H 1.07999 * 120.07546 * 0.02562 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6459 -1.1672 -0.0011 6 6 4.1482 -2.5880 -0.0010 7 6 4.3793 -3.2386 1.1983 8 6 4.8409 -4.5426 1.2072 9 6 5.0682 -5.2053 0.0184 10 6 4.8427 -4.5531 -1.1946 11 6 5.0898 -5.2550 -2.4721 12 8 4.8877 -4.6861 -3.5271 13 7 5.5391 -6.5256 -2.4669 14 6 5.7835 -7.2213 -3.7328 15 6 7.2762 -7.3860 -4.0715 16 7 7.1910 -8.6762 -3.3553 17 6 8.0953 -9.4756 -2.7084 18 1 7.7699 -10.3978 -2.2501 19 6 9.4301 -9.1006 -2.6417 20 7 9.8265 -7.9764 -3.1998 21 14 10.6638 -10.1913 -1.7598 22 1 11.2422 -11.1630 -2.7223 23 1 11.7489 -9.3520 -1.1912 24 1 9.9809 -10.9261 -0.6647 25 6 5.7404 -8.7557 -3.6152 26 6 4.3772 -3.2370 -1.1964 27 1 -0.3633 -0.5139 0.8899 28 1 -0.3633 1.0276 0.0005 29 1 -0.3634 -0.5139 -0.8900 30 1 1.6959 -2.0073 -0.0005 31 1 4.0096 -0.6535 0.8889 32 1 4.0089 -0.6532 -0.8911 33 1 4.1985 -2.7259 2.1315 34 1 5.0197 -5.0446 2.1466 35 1 5.4243 -6.2248 0.0267 36 1 5.7000 -6.9797 -1.6250 37 1 5.1875 -6.8274 -4.5561 38 1 7.4760 -7.4880 -5.1381 39 1 7.9204 -6.6537 -3.5848 40 1 10.7593 -7.7145 -3.1535 41 1 5.1608 -9.1150 -2.7649 42 1 5.4882 -9.2609 -4.5476 43 1 4.1972 -2.7279 -2.1318 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001031409720.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:13 Heat of formation + Delta-G solvation = -17.397187 kcal Electronic energy + Delta-G solvation = -25313.206250 eV Core-core repulsion = 21551.991788 eV Total energy + Delta-G solvation = -3761.214462 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.46683 -40.68370 -39.88111 -38.85435 -36.04540 -35.02421 -33.85696 -32.67102 -32.09022 -30.50873 -29.45765 -26.75883 -26.61134 -25.75722 -24.31835 -22.83454 -21.64143 -21.46131 -20.96911 -18.88116 -18.75007 -17.73411 -17.46794 -17.05198 -16.97321 -16.83367 -16.58027 -16.02816 -15.82585 -15.67814 -15.44288 -14.84026 -14.58631 -14.58473 -14.37793 -13.97348 -13.84390 -13.56338 -13.36718 -13.23681 -13.16726 -12.91319 -12.79940 -12.65722 -12.40017 -12.12987 -12.10236 -11.73176 -11.40325 -11.13852 -11.07925 -10.87355 -10.17144 -10.13241 -9.93939 -9.83462 -8.95221 -7.89137 -5.24266 -0.19463 0.23595 1.46304 1.48156 1.56664 1.65039 1.76780 2.14082 2.36413 2.47102 2.89594 3.26049 3.40431 3.53150 3.63744 3.85791 3.87689 3.97412 4.09924 4.23047 4.26898 4.44033 4.51039 4.54643 4.61030 4.68284 4.70724 4.78398 4.82774 4.87876 4.97022 5.08127 5.12099 5.24957 5.28999 5.36515 5.39413 5.44457 5.48633 5.69045 5.85307 5.90715 6.55754 6.56980 6.89784 7.18392 7.24809 7.61122 8.54495 9.27068 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.022585 B = 0.002476 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.474830 B =11306.691144 C =11882.360372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.503 3.497 3 O -0.602 6.602 4 N -0.716 5.716 5 C 0.165 3.835 6 C -0.114 4.114 7 C -0.064 4.064 8 C -0.120 4.120 9 C -0.077 4.077 10 C -0.148 4.148 11 C 0.553 3.447 12 O -0.584 6.584 13 N -0.683 5.683 14 C 0.111 3.889 15 C 0.144 3.856 16 N -0.635 5.635 17 C -0.229 4.229 18 H 0.091 0.909 19 C -0.069 4.069 20 N -0.955 5.955 21 Si 0.978 3.022 22 H -0.291 1.291 23 H -0.299 1.299 24 H -0.262 1.262 25 C 0.121 3.879 26 C -0.052 4.052 27 H 0.114 0.886 28 H 0.087 0.913 29 H 0.107 0.893 30 H 0.416 0.584 31 H 0.084 0.916 32 H 0.061 0.939 33 H 0.159 0.841 34 H 0.162 0.838 35 H 0.136 0.864 36 H 0.409 0.591 37 H 0.099 0.901 38 H 0.023 0.977 39 H 0.039 0.961 40 H 0.246 0.754 41 H 0.073 0.927 42 H 0.066 0.934 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.869 8.811 12.446 25.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.293 3.707 3 O -0.484 6.484 4 N -0.369 5.369 5 C 0.041 3.959 6 C -0.115 4.115 7 C -0.083 4.083 8 C -0.138 4.138 9 C -0.096 4.096 10 C -0.151 4.151 11 C 0.342 3.658 12 O -0.466 6.466 13 N -0.332 5.332 14 C 0.004 3.996 15 C 0.018 3.982 16 N -0.362 5.362 17 C -0.357 4.357 18 H 0.108 0.892 19 C -0.262 4.262 20 N -0.604 5.604 21 Si 0.806 3.194 22 H -0.218 1.218 23 H -0.226 1.226 24 H -0.186 1.186 25 C -0.005 4.005 26 C -0.071 4.071 27 H 0.132 0.868 28 H 0.106 0.894 29 H 0.126 0.874 30 H 0.253 0.747 31 H 0.102 0.898 32 H 0.080 0.920 33 H 0.176 0.824 34 H 0.179 0.821 35 H 0.153 0.847 36 H 0.246 0.754 37 H 0.117 0.883 38 H 0.041 0.959 39 H 0.058 0.942 40 H 0.055 0.945 41 H 0.091 0.909 42 H 0.084 0.916 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -19.302 9.812 11.825 24.671 hybrid contribution 1.418 -1.147 -0.080 1.826 sum -17.884 8.664 11.745 23.083 Atomic orbital electron populations 1.21932 0.88087 1.06049 1.06461 1.21623 0.92334 0.82638 0.74129 1.90713 1.72252 1.33288 1.52141 1.46095 1.06551 1.09446 1.74825 1.20069 0.80736 0.92130 1.02931 1.19719 1.03084 0.95745 0.92936 1.21600 0.94376 0.94286 0.98013 1.21454 0.98875 0.94967 0.98457 1.21633 0.95859 1.00391 0.91720 1.19841 1.06758 0.96086 0.92453 1.18747 0.76206 0.81378 0.89481 1.90713 1.54798 1.66933 1.34117 1.45402 1.64999 1.13260 1.09577 1.22551 0.96665 0.93532 0.86802 1.22658 0.93284 0.88194 0.94091 1.46463 1.04713 1.23359 1.61710 1.19441 0.88562 1.01889 1.25782 0.89161 1.25639 0.98900 0.99147 1.02495 1.70044 1.15335 1.24630 1.50435 0.85089 0.78551 0.77500 0.78242 1.21847 1.22574 1.18612 1.23062 0.85080 0.92135 1.00175 1.21124 0.94703 0.92587 0.98722 0.86756 0.89363 0.87437 0.74708 0.89826 0.92043 0.82380 0.82080 0.84669 0.75353 0.88306 0.95942 0.94250 0.94529 0.90900 0.91612 0.86066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.29 10.32 71.24 0.74 -0.55 16 2 C 0.50 8.64 7.94 87.66 0.70 9.34 16 3 O -0.60 -16.74 17.08 -3.00 -0.05 -16.79 16 4 N -0.72 -9.86 5.55 -466.79 -2.59 -12.45 16 5 C 0.16 2.79 5.79 85.63 0.50 3.29 16 6 C -0.11 -1.98 5.24 -19.90 -0.10 -2.08 16 7 C -0.06 -0.86 9.69 22.33 0.22 -0.64 16 8 C -0.12 -1.76 10.03 22.23 0.22 -1.54 16 9 C -0.08 -1.61 9.54 22.53 0.21 -1.39 16 10 C -0.15 -3.95 5.87 -20.09 -0.12 -4.07 16 11 C 0.55 19.03 7.77 86.79 0.67 19.70 16 12 O -0.58 -24.00 15.97 -3.88 -0.06 -24.07 16 13 N -0.68 -23.31 5.32 -450.26 -2.40 -25.71 16 14 C 0.11 4.21 4.40 46.75 0.21 4.42 16 15 C 0.14 7.02 7.33 86.44 0.63 7.65 16 16 N -0.63 -30.98 3.70 -716.67 -2.65 -33.63 16 17 C -0.23 -12.19 10.70 84.03 0.90 -11.29 16 18 H 0.09 4.51 7.83 -2.91 -0.02 4.48 16 19 C -0.07 -3.85 5.50 84.86 0.47 -3.38 16 20 N -0.96 -57.74 11.39 21.65 0.25 -57.50 16 21 Si 0.98 44.64 29.55 68.60 2.03 46.67 16 22 H -0.29 -13.28 7.11 99.48 0.71 -12.58 16 23 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 24 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 25 C 0.12 4.42 8.68 86.49 0.75 5.17 16 26 C -0.05 -1.23 9.24 22.53 0.21 -1.02 16 27 H 0.11 0.31 8.14 -2.39 -0.02 0.29 16 28 H 0.09 0.80 8.12 -2.39 -0.02 0.78 16 29 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.42 3.61 8.46 -92.71 -0.78 2.82 16 31 H 0.08 1.35 8.08 -2.38 -0.02 1.34 16 32 H 0.06 1.28 8.08 -2.39 -0.02 1.26 16 33 H 0.16 1.19 8.06 -2.91 -0.02 1.17 16 34 H 0.16 1.46 8.06 -2.91 -0.02 1.43 16 35 H 0.14 2.66 6.41 -2.91 -0.02 2.64 16 36 H 0.41 12.75 6.77 -92.70 -0.63 12.12 16 37 H 0.10 3.62 7.51 -2.39 -0.02 3.60 16 38 H 0.02 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.04 2.20 7.16 -2.39 -0.02 2.18 16 40 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 41 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 42 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 43 H 0.12 3.21 7.65 -2.91 -0.02 3.19 16 Total: -1.00 -79.08 369.17 0.35 -78.73 By element: Atomic # 1 Polarization: 21.51 SS G_CDS: -0.36 Total: 21.14 kcal Atomic # 6 Polarization: 17.40 SS G_CDS: 6.20 Total: 23.60 kcal Atomic # 7 Polarization: -121.89 SS G_CDS: -7.39 Total: -129.29 kcal Atomic # 8 Polarization: -40.74 SS G_CDS: -0.11 Total: -40.86 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Total: -79.08 0.35 -78.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031409720.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.331 kcal (2) G-P(sol) polarization free energy of solvation -79.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds