Wall clock time and date at job start Tue Mar 31 2020 11:06:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21277 * 119.99581 * 2 1 4 4 N 1.34776 * 120.00169 * 179.97438 * 2 1 3 5 5 C 1.46499 * 120.00083 * 4.98116 * 4 2 1 6 6 C 1.39437 * 119.99713 * 184.97960 * 4 2 1 7 7 C 1.39138 * 119.92464 * 124.43697 * 6 4 2 8 8 C 1.37666 * 120.07422 * 179.97438 * 7 6 4 9 9 C 1.39753 * 119.92680 * 0.02562 * 8 7 6 10 10 C 1.47596 * 120.07499 * 179.97438 * 9 8 7 11 11 O 1.21587 * 119.99499 * 0.02562 * 10 9 8 12 12 N 1.34773 * 120.00016 * 179.97438 * 10 9 8 13 13 C 1.46504 * 119.99873 * 179.97438 * 12 10 9 14 14 C 1.53497 * 114.20483 * 154.99903 * 13 12 10 15 15 N 1.47074 * 87.98562 * 87.71818 * 14 13 12 16 16 C 1.36929 * 136.05650 * 207.08669 * 15 14 13 17 17 H 1.07996 * 120.00598 * 354.86075 * 16 15 14 18 18 C 1.38817 * 119.99719 * 174.86073 * 16 15 14 19 19 N 1.31615 * 120.00043 * 184.46990 * 18 16 15 20 20 Si 1.86794 * 120.00085 * 4.47824 * 18 16 15 21 21 H 1.48496 * 109.47384 * 174.25011 * 20 18 16 22 22 H 1.48510 * 109.46783 * 294.24500 * 20 18 16 23 23 H 1.48503 * 109.47618 * 54.24309 * 20 18 16 24 24 C 1.47068 * 87.88176 * 27.33874 * 15 14 13 25 25 C 1.39751 * 119.84981 * 0.25220 * 9 8 7 26 26 C 1.37668 * 119.92735 * 359.48928 * 25 9 8 27 27 H 1.08999 * 109.47357 * 239.99841 * 1 2 3 28 28 H 1.09001 * 109.47456 * 0.02562 * 1 2 3 29 29 H 1.09005 * 109.47111 * 120.00233 * 1 2 3 30 30 H 1.09000 * 109.46738 * 270.00322 * 5 4 2 31 31 H 1.09005 * 109.46982 * 29.99943 * 5 4 2 32 32 H 1.09000 * 109.46780 * 149.99768 * 5 4 2 33 33 H 1.07998 * 119.95921 * 359.95518 * 7 6 4 34 34 H 1.08002 * 120.03943 * 179.97438 * 8 7 6 35 35 H 0.97002 * 120.00355 * 359.97438 * 12 10 9 36 36 H 1.09001 * 113.28217 * 21.93942 * 13 12 10 37 37 H 1.08999 * 113.47038 * 332.94062 * 14 13 12 38 38 H 1.08997 * 113.52190 * 202.50381 * 14 13 12 39 39 H 0.97001 * 120.00196 * 5.00804 * 19 18 16 40 40 H 1.09001 * 113.46379 * 87.43706 * 24 15 14 41 41 H 1.08997 * 113.46898 * 217.87740 * 24 15 14 42 42 H 1.08009 * 120.03358 * 179.74828 * 25 9 8 43 43 H 1.08003 * 119.96500 * 180.24716 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.4526 -2.4336 -0.1091 6 6 3.5713 -1.1693 0.1053 7 6 4.1899 -1.8944 1.1191 8 6 5.5624 -1.8991 1.2251 9 6 6.3346 -1.1740 0.3134 10 6 7.8064 -1.1763 0.4244 11 8 8.3483 -1.8098 1.3095 12 7 8.5496 -0.4770 -0.4559 13 6 10.0105 -0.4788 -0.3453 14 6 10.7418 -0.1918 -1.6641 15 7 10.6447 1.2408 -1.3460 16 6 10.6011 2.4085 -2.0598 17 1 10.7254 2.3907 -3.1325 18 6 10.3973 3.6152 -1.4047 19 7 10.2675 4.7266 -2.0978 20 14 10.3074 3.6619 0.4605 21 1 10.2247 5.0725 0.9170 22 1 9.1028 2.9227 0.9166 23 1 11.5230 3.0274 1.0308 24 6 10.6215 0.8676 0.0764 25 6 5.7098 -0.4421 -0.7000 26 6 4.3371 -0.4460 -0.8036 27 1 -0.3634 -0.5138 0.8899 28 1 -0.3634 1.0277 -0.0005 29 1 -0.3633 -0.5139 -0.8900 30 1 1.1947 -2.7917 0.8876 31 1 0.5413 -2.2798 -0.6870 32 1 2.0799 -3.1713 -0.6094 33 1 3.5925 -2.4539 1.8236 34 1 6.0419 -2.4617 2.0124 35 1 8.1174 0.0276 -1.1626 36 1 10.3999 -1.3357 0.2043 37 1 10.1724 -0.4798 -2.5478 38 1 11.7662 -0.5637 -1.6833 39 1 10.2414 4.6936 -3.0669 40 1 11.6141 0.7747 0.5170 41 1 9.9496 1.4822 0.6755 42 1 6.3036 0.1226 -1.4037 43 1 3.8538 0.1162 -1.5890 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031458220.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:16 Heat of formation + Delta-G solvation = 36.178429 kcal Electronic energy + Delta-G solvation = -25981.064310 eV Core-core repulsion = 22222.173061 eV Total energy + Delta-G solvation = -3758.891249 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.94318 -39.95936 -38.61981 -37.60427 -35.81730 -33.56842 -32.24627 -31.44558 -31.06756 -29.38428 -27.83161 -27.20184 -25.38533 -24.20882 -22.79842 -22.39869 -20.84293 -19.81151 -19.50519 -18.01485 -17.52124 -17.43493 -17.02000 -16.43797 -15.91784 -15.27107 -14.92574 -14.74791 -14.62559 -14.24187 -13.86255 -13.78711 -13.70223 -13.66716 -13.35140 -13.16311 -12.96077 -12.93800 -12.60712 -12.51881 -12.40722 -11.99328 -11.41424 -11.36950 -11.02942 -10.57184 -10.29855 -10.28238 -9.84447 -9.78583 -9.41232 -9.16410 -9.16236 -8.92420 -8.62374 -8.40404 -7.18055 -6.31358 -3.25327 0.64915 1.23895 2.18802 2.48658 2.88698 3.36498 3.44948 3.47495 3.67619 3.78698 4.22208 4.52528 4.59734 4.65402 4.73295 4.75248 4.77960 4.79555 4.85731 4.96972 5.10997 5.14481 5.16961 5.26430 5.31682 5.40187 5.41525 5.79986 5.85470 5.90422 5.98694 6.10970 6.18549 6.20929 6.24250 6.29328 6.34311 6.43033 6.72310 6.86414 6.98573 7.06812 7.74588 7.81916 8.21913 8.42812 8.96005 9.48469 10.33578 11.20022 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.015266 B = 0.003361 C = 0.002975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1833.688226 B = 8329.893439 C = 9410.082494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.508 3.492 3 O -0.520 6.520 4 N -0.577 5.577 5 C 0.077 3.923 6 C 0.159 3.841 7 C -0.139 4.139 8 C -0.047 4.047 9 C -0.134 4.134 10 C 0.559 3.441 11 O -0.547 6.547 12 N -0.689 5.689 13 C 0.100 3.900 14 C 0.115 3.885 15 N -0.628 5.628 16 C -0.306 4.306 17 H 0.082 0.918 18 C -0.021 4.021 19 N -0.933 5.933 20 Si 1.071 2.929 21 H -0.296 1.296 22 H -0.291 1.291 23 H -0.290 1.290 24 C 0.075 3.925 25 C -0.068 4.068 26 C -0.112 4.112 27 H 0.090 0.910 28 H 0.095 0.905 29 H 0.090 0.910 30 H 0.063 0.937 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.130 0.870 34 H 0.141 0.859 35 H 0.407 0.593 36 H 0.105 0.895 37 H 0.050 0.950 38 H 0.052 0.948 39 H 0.261 0.739 40 H 0.053 0.947 41 H 0.060 0.940 42 H 0.135 0.865 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.724 -18.494 3.910 28.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.298 3.702 3 O -0.394 6.394 4 N -0.307 5.307 5 C -0.065 4.065 6 C 0.067 3.933 7 C -0.159 4.159 8 C -0.067 4.067 9 C -0.137 4.137 10 C 0.347 3.653 11 O -0.426 6.426 12 N -0.339 5.339 13 C -0.006 4.006 14 C -0.013 4.013 15 N -0.357 5.357 16 C -0.432 4.432 17 H 0.100 0.900 18 C -0.220 4.220 19 N -0.575 5.575 20 Si 0.904 3.096 21 H -0.223 1.223 22 H -0.220 1.220 23 H -0.217 1.217 24 C -0.052 4.052 25 C -0.087 4.087 26 C -0.132 4.132 27 H 0.109 0.891 28 H 0.114 0.886 29 H 0.109 0.891 30 H 0.081 0.919 31 H 0.099 0.901 32 H 0.097 0.903 33 H 0.148 0.852 34 H 0.159 0.841 35 H 0.243 0.757 36 H 0.123 0.877 37 H 0.068 0.932 38 H 0.070 0.930 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.078 0.922 42 H 0.153 0.847 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -20.196 -17.081 5.653 27.048 hybrid contribution 0.061 -0.748 -1.728 1.884 sum -20.135 -17.828 3.925 27.179 Atomic orbital electron populations 1.21949 0.90790 1.05899 1.04309 1.21064 0.90896 0.82754 0.75508 1.90815 1.70612 1.30733 1.47219 1.45420 1.04510 1.07699 1.73037 1.21945 0.97364 0.84743 1.02417 1.17780 0.82417 0.98459 0.94614 1.20992 0.94698 1.02630 0.97542 1.21078 0.92405 0.95972 0.97213 1.20045 0.93308 1.01723 0.98630 1.18140 0.86505 0.79114 0.81586 1.90738 1.73506 1.44068 1.34268 1.45434 1.06656 1.49645 1.32150 1.22435 0.79748 0.98788 0.99651 1.22701 0.97430 0.86116 0.95023 1.46251 1.87048 1.01349 1.01047 1.20142 1.48102 0.83159 0.91812 0.89988 1.25653 0.98763 0.90773 1.06789 1.70925 1.51892 1.26740 1.07955 0.83704 0.76231 0.74267 0.75387 1.22312 1.21977 1.21676 1.23382 0.98503 0.93600 0.89674 1.21315 0.94441 0.96178 0.96806 1.21058 0.93317 1.00044 0.98799 0.89107 0.88624 0.89108 0.91876 0.90140 0.90332 0.85221 0.84117 0.75688 0.87688 0.93165 0.93020 0.92915 0.92918 0.92228 0.84729 0.85173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.87 8.99 36.00 0.32 -0.54 16 2 C 0.51 5.18 7.61 -10.99 -0.08 5.10 16 3 O -0.52 -8.01 15.97 5.56 0.09 -7.93 16 4 N -0.58 -5.11 2.97 -120.82 -0.36 -5.46 16 5 C 0.08 0.32 9.90 59.85 0.59 0.91 16 6 C 0.16 1.82 5.23 -83.73 -0.44 1.38 16 7 C -0.14 -1.47 9.58 -39.46 -0.38 -1.85 16 8 C -0.05 -0.59 9.58 -39.22 -0.38 -0.97 16 9 C -0.13 -1.95 5.88 -104.95 -0.62 -2.56 16 10 C 0.56 9.58 7.76 -12.44 -0.10 9.49 16 11 O -0.55 -10.57 15.93 5.29 0.08 -10.49 16 12 N -0.69 -12.03 5.35 -54.51 -0.29 -12.32 16 13 C 0.10 1.84 4.61 -67.67 -0.31 1.53 16 14 C 0.11 2.19 8.44 -8.50 -0.07 2.11 16 15 N -0.63 -15.23 3.69 -184.61 -0.68 -15.91 16 16 C -0.31 -8.74 11.09 -15.06 -0.17 -8.91 16 17 H 0.08 2.45 8.05 -52.49 -0.42 2.03 16 18 C -0.02 -0.62 5.50 -17.43 -0.10 -0.72 16 19 N -0.93 -29.66 13.70 55.49 0.76 -28.89 16 20 Si 1.07 27.87 25.12 -169.99 -4.27 23.60 16 21 H -0.30 -7.83 7.11 56.52 0.40 -7.43 16 22 H -0.29 -7.31 6.30 56.52 0.36 -6.96 16 23 H -0.29 -7.13 6.70 56.52 0.38 -6.75 16 24 C 0.07 1.63 5.76 -8.37 -0.05 1.59 16 25 C -0.07 -0.93 9.53 -39.22 -0.37 -1.30 16 26 C -0.11 -1.46 8.77 -39.46 -0.35 -1.80 16 27 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.09 0.54 8.12 -51.93 -0.42 0.11 16 29 H 0.09 0.25 7.25 -51.93 -0.38 -0.12 16 30 H 0.06 0.17 8.14 -51.93 -0.42 -0.25 16 31 H 0.08 0.15 6.48 -51.93 -0.34 -0.18 16 32 H 0.08 0.31 8.05 -51.93 -0.42 -0.11 16 33 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 34 H 0.14 1.68 7.64 -52.49 -0.40 1.28 16 35 H 0.41 6.87 6.78 -40.82 -0.28 6.59 16 36 H 0.11 1.79 7.45 -51.93 -0.39 1.41 16 37 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 38 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 39 H 0.26 8.15 8.73 -40.82 -0.36 7.79 16 40 H 0.05 1.11 8.07 -51.93 -0.42 0.69 16 41 H 0.06 1.41 4.02 -51.93 -0.21 1.20 16 42 H 0.13 1.76 6.39 -52.48 -0.34 1.43 16 43 H 0.13 1.68 7.73 -52.48 -0.41 1.27 16 LS Contribution 356.45 15.07 5.37 5.37 Total: -1.00 -37.64 356.45 -7.53 -45.17 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -5.74 Total: 3.44 kcal Atomic # 6 Polarization: 5.93 SS G_CDS: -2.49 Total: 3.44 kcal Atomic # 7 Polarization: -62.03 SS G_CDS: -0.57 Total: -62.60 kcal Atomic # 8 Polarization: -18.59 SS G_CDS: 0.17 Total: -18.41 kcal Atomic # 14 Polarization: 27.87 SS G_CDS: -4.27 Total: 23.60 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -37.64 -7.53 -45.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031458220.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.344 kcal (2) G-P(sol) polarization free energy of solvation -37.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.165 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds