Wall clock time and date at job start Tue Mar 31 2020 11:06:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21277 * 119.99581 * 2 1 4 4 N 1.34776 * 120.00169 * 179.97438 * 2 1 3 5 5 C 1.46499 * 120.00083 * 4.98116 * 4 2 1 6 6 C 1.39437 * 119.99713 * 184.97960 * 4 2 1 7 7 C 1.39138 * 119.92464 * 124.43697 * 6 4 2 8 8 C 1.37666 * 120.07422 * 179.97438 * 7 6 4 9 9 C 1.39753 * 119.92680 * 0.02562 * 8 7 6 10 10 C 1.47596 * 120.07499 * 179.97438 * 9 8 7 11 11 O 1.21587 * 119.99499 * 0.02562 * 10 9 8 12 12 N 1.34773 * 120.00016 * 179.97438 * 10 9 8 13 13 C 1.46504 * 119.99873 * 179.97438 * 12 10 9 14 14 C 1.53497 * 114.20483 * 154.99903 * 13 12 10 15 15 N 1.47074 * 87.98562 * 87.71818 * 14 13 12 16 16 C 1.36929 * 136.05650 * 207.08669 * 15 14 13 17 17 H 1.07996 * 120.00598 * 354.86075 * 16 15 14 18 18 C 1.38817 * 119.99719 * 174.86073 * 16 15 14 19 19 N 1.31615 * 120.00043 * 184.46990 * 18 16 15 20 20 Si 1.86794 * 120.00085 * 4.47824 * 18 16 15 21 21 H 1.48496 * 109.47384 * 174.25011 * 20 18 16 22 22 H 1.48510 * 109.46783 * 294.24500 * 20 18 16 23 23 H 1.48503 * 109.47618 * 54.24309 * 20 18 16 24 24 C 1.47068 * 87.88176 * 27.33874 * 15 14 13 25 25 C 1.39751 * 119.84981 * 0.25220 * 9 8 7 26 26 C 1.37668 * 119.92735 * 359.48928 * 25 9 8 27 27 H 1.08999 * 109.47357 * 239.99841 * 1 2 3 28 28 H 1.09001 * 109.47456 * 0.02562 * 1 2 3 29 29 H 1.09005 * 109.47111 * 120.00233 * 1 2 3 30 30 H 1.09000 * 109.46738 * 270.00322 * 5 4 2 31 31 H 1.09005 * 109.46982 * 29.99943 * 5 4 2 32 32 H 1.09000 * 109.46780 * 149.99768 * 5 4 2 33 33 H 1.07998 * 119.95921 * 359.95518 * 7 6 4 34 34 H 1.08002 * 120.03943 * 179.97438 * 8 7 6 35 35 H 0.97002 * 120.00355 * 359.97438 * 12 10 9 36 36 H 1.09001 * 113.28217 * 21.93942 * 13 12 10 37 37 H 1.08999 * 113.47038 * 332.94062 * 14 13 12 38 38 H 1.08997 * 113.52190 * 202.50381 * 14 13 12 39 39 H 0.97001 * 120.00196 * 5.00804 * 19 18 16 40 40 H 1.09001 * 113.46379 * 87.43706 * 24 15 14 41 41 H 1.08997 * 113.46898 * 217.87740 * 24 15 14 42 42 H 1.08009 * 120.03358 * 179.74828 * 25 9 8 43 43 H 1.08003 * 119.96500 * 180.24716 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.4526 -2.4336 -0.1091 6 6 3.5713 -1.1693 0.1053 7 6 4.1899 -1.8944 1.1191 8 6 5.5624 -1.8991 1.2251 9 6 6.3346 -1.1740 0.3134 10 6 7.8064 -1.1763 0.4244 11 8 8.3483 -1.8098 1.3095 12 7 8.5496 -0.4770 -0.4559 13 6 10.0105 -0.4788 -0.3453 14 6 10.7418 -0.1918 -1.6641 15 7 10.6447 1.2408 -1.3460 16 6 10.6011 2.4085 -2.0598 17 1 10.7254 2.3907 -3.1325 18 6 10.3973 3.6152 -1.4047 19 7 10.2675 4.7266 -2.0978 20 14 10.3074 3.6619 0.4605 21 1 10.2247 5.0725 0.9170 22 1 9.1028 2.9227 0.9166 23 1 11.5230 3.0274 1.0308 24 6 10.6215 0.8676 0.0764 25 6 5.7098 -0.4421 -0.7000 26 6 4.3371 -0.4460 -0.8036 27 1 -0.3634 -0.5138 0.8899 28 1 -0.3634 1.0277 -0.0005 29 1 -0.3633 -0.5139 -0.8900 30 1 1.1947 -2.7917 0.8876 31 1 0.5413 -2.2798 -0.6870 32 1 2.0799 -3.1713 -0.6094 33 1 3.5925 -2.4539 1.8236 34 1 6.0419 -2.4617 2.0124 35 1 8.1174 0.0276 -1.1626 36 1 10.3999 -1.3357 0.2043 37 1 10.1724 -0.4798 -2.5478 38 1 11.7662 -0.5637 -1.6833 39 1 10.2414 4.6936 -3.0669 40 1 11.6141 0.7747 0.5170 41 1 9.9496 1.4822 0.6755 42 1 6.3036 0.1226 -1.4037 43 1 3.8538 0.1162 -1.5890 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001031458220.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:16 Heat of formation + Delta-G solvation = 8.431138 kcal Electronic energy + Delta-G solvation = -25982.267523 eV Core-core repulsion = 22222.173061 eV Total energy + Delta-G solvation = -3760.094462 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.84485 -41.24009 -39.93958 -38.87061 -36.64630 -35.21113 -34.20501 -32.28333 -32.08764 -30.23809 -29.50738 -27.77930 -27.06185 -25.42737 -24.13142 -23.67678 -22.08465 -21.22202 -20.62217 -19.57670 -19.13824 -18.35798 -17.85403 -17.52908 -17.05736 -16.80701 -16.23183 -15.97132 -15.77665 -15.66537 -15.32212 -15.25505 -14.95613 -14.68684 -14.39904 -14.15248 -13.80049 -13.67249 -13.52408 -13.39230 -13.32065 -13.12578 -12.94383 -12.85399 -12.51434 -12.33272 -12.06308 -11.37732 -11.23516 -11.19676 -11.10082 -11.02714 -10.67229 -10.12956 -10.05280 -9.38250 -9.24692 -8.64524 -5.49441 -0.38237 0.27198 1.34337 1.40553 1.41769 1.60451 1.72375 1.85649 2.05329 2.47223 2.71012 2.95272 3.17183 3.54459 3.63239 3.63916 3.78596 3.82667 4.13943 4.18685 4.25869 4.31396 4.33839 4.45901 4.48484 4.57480 4.60842 4.63917 4.73059 4.73500 4.84698 4.87704 4.89932 5.00876 5.06359 5.15732 5.21509 5.22773 5.38675 5.52538 5.84537 5.92862 6.20135 6.44797 6.67790 7.02296 7.07060 7.29682 8.23249 8.89677 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.015266 B = 0.003361 C = 0.002975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1833.688226 B = 8329.893439 C = 9410.082494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.499 3.501 3 O -0.586 6.586 4 N -0.575 5.575 5 C 0.067 3.933 6 C 0.162 3.838 7 C -0.127 4.127 8 C -0.046 4.046 9 C -0.156 4.156 10 C 0.562 3.438 11 O -0.570 6.570 12 N -0.694 5.694 13 C 0.120 3.880 14 C 0.119 3.881 15 N -0.656 5.656 16 C -0.283 4.283 17 H 0.058 0.942 18 C -0.079 4.079 19 N -0.972 5.972 20 Si 1.107 2.893 21 H -0.307 1.307 22 H -0.283 1.283 23 H -0.266 1.266 24 C 0.065 3.935 25 C -0.074 4.074 26 C -0.129 4.129 27 H 0.119 0.881 28 H 0.086 0.914 29 H 0.120 0.880 30 H 0.086 0.914 31 H 0.108 0.892 32 H 0.081 0.919 33 H 0.166 0.834 34 H 0.148 0.852 35 H 0.407 0.593 36 H 0.127 0.873 37 H 0.060 0.940 38 H 0.079 0.921 39 H 0.249 0.751 40 H 0.071 0.929 41 H 0.043 0.957 42 H 0.130 0.870 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.809 -21.758 5.452 31.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.291 3.709 3 O -0.465 6.465 4 N -0.303 5.303 5 C -0.072 4.072 6 C 0.069 3.931 7 C -0.147 4.147 8 C -0.065 4.065 9 C -0.159 4.159 10 C 0.351 3.649 11 O -0.451 6.451 12 N -0.343 5.343 13 C 0.013 3.987 14 C -0.006 4.006 15 N -0.385 5.385 16 C -0.410 4.410 17 H 0.075 0.925 18 C -0.271 4.271 19 N -0.618 5.618 20 Si 0.936 3.064 21 H -0.235 1.235 22 H -0.210 1.210 23 H -0.192 1.192 24 C -0.061 4.061 25 C -0.093 4.093 26 C -0.148 4.148 27 H 0.138 0.862 28 H 0.105 0.895 29 H 0.139 0.861 30 H 0.104 0.896 31 H 0.126 0.874 32 H 0.100 0.900 33 H 0.183 0.817 34 H 0.166 0.834 35 H 0.244 0.756 36 H 0.145 0.855 37 H 0.078 0.922 38 H 0.096 0.904 39 H 0.058 0.942 40 H 0.088 0.912 41 H 0.061 0.939 42 H 0.148 0.852 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -22.302 -20.457 7.187 31.105 hybrid contribution 0.617 0.112 -2.276 2.361 sum -21.685 -20.345 4.910 30.138 Atomic orbital electron populations 1.21991 0.86539 1.06347 1.07011 1.22081 0.92889 0.81998 0.73897 1.90790 1.72168 1.33104 1.50407 1.45694 1.03488 1.09255 1.71863 1.22330 0.97944 0.82482 1.04482 1.18006 0.84073 0.97125 0.93878 1.21265 0.94086 1.01952 0.97361 1.21252 0.93215 0.95369 0.96708 1.19933 0.91967 1.03800 1.00223 1.18471 0.87451 0.78204 0.80772 1.90713 1.74184 1.45086 1.35106 1.45508 1.06479 1.49886 1.32445 1.22259 0.80116 0.97513 0.98784 1.22910 0.99045 0.82741 0.95940 1.46283 1.87400 1.02182 1.02677 1.20020 1.44964 0.84903 0.91147 0.92458 1.26704 0.99675 0.90889 1.09856 1.71003 1.55472 1.28095 1.07250 0.83236 0.77508 0.73802 0.71825 1.23530 1.21042 1.19170 1.23619 0.99360 0.95085 0.88033 1.21282 0.94863 0.96333 0.96827 1.21108 0.93246 1.00877 0.99617 0.86249 0.89462 0.86132 0.89551 0.87374 0.90036 0.81689 0.83400 0.75635 0.85494 0.92190 0.90365 0.94206 0.91192 0.93898 0.85228 0.85971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.13 8.99 71.23 0.64 -0.48 16 2 C 0.50 9.40 7.61 87.66 0.67 10.06 16 3 O -0.59 -18.34 15.97 -3.02 -0.05 -18.39 16 4 N -0.57 -8.74 2.97 -654.55 -1.94 -10.68 16 5 C 0.07 0.27 9.90 127.77 1.26 1.54 16 6 C 0.16 3.46 5.23 38.36 0.20 3.66 16 7 C -0.13 -2.37 9.58 22.35 0.21 -2.15 16 8 C -0.05 -1.08 9.58 22.50 0.22 -0.86 16 9 C -0.16 -4.47 5.88 -20.08 -0.12 -4.58 16 10 C 0.56 18.79 7.76 86.71 0.67 19.46 16 11 O -0.57 -21.27 15.93 -3.99 -0.06 -21.33 16 12 N -0.69 -23.62 5.35 -444.62 -2.38 -26.01 16 13 C 0.12 4.15 4.61 45.55 0.21 4.36 16 14 C 0.12 4.29 8.44 83.18 0.70 4.99 16 15 N -0.66 -31.23 3.69 -737.99 -2.72 -33.95 16 16 C -0.28 -16.37 11.09 84.04 0.93 -15.44 16 17 H 0.06 3.54 8.05 -2.91 -0.02 3.51 16 18 C -0.08 -4.81 5.50 84.86 0.47 -4.34 16 19 N -0.97 -63.95 13.70 21.65 0.30 -63.66 16 20 Si 1.11 57.00 25.12 68.60 1.72 58.72 16 21 H -0.31 -16.22 7.11 99.48 0.71 -15.51 16 22 H -0.28 -13.95 6.30 99.48 0.63 -13.33 16 23 H -0.27 -12.50 6.70 99.48 0.67 -11.83 16 24 C 0.06 2.71 5.76 83.26 0.48 3.19 16 25 C -0.07 -2.05 9.53 22.50 0.21 -1.84 16 26 C -0.13 -3.36 8.77 22.35 0.20 -3.17 16 27 H 0.12 0.19 8.14 -2.39 -0.02 0.17 16 28 H 0.09 0.81 8.12 -2.39 -0.02 0.79 16 29 H 0.12 0.15 7.25 -2.38 -0.02 0.13 16 30 H 0.09 0.02 8.14 -2.39 -0.02 0.00 16 31 H 0.11 -0.13 6.48 -2.38 -0.02 -0.14 16 32 H 0.08 0.33 8.05 -2.39 -0.02 0.31 16 33 H 0.17 1.87 8.06 -2.91 -0.02 1.85 16 34 H 0.15 3.24 7.64 -2.91 -0.02 3.22 16 35 H 0.41 13.77 6.78 -92.71 -0.63 13.14 16 36 H 0.13 3.94 7.45 -2.39 -0.02 3.93 16 37 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 38 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 39 H 0.25 16.28 8.73 -92.71 -0.81 15.48 16 40 H 0.07 2.73 8.07 -2.39 -0.02 2.71 16 41 H 0.04 1.96 4.02 -2.39 -0.01 1.95 16 42 H 0.13 3.58 6.39 -2.91 -0.02 3.56 16 43 H 0.12 3.31 7.73 -2.91 -0.02 3.29 16 Total: -1.00 -85.22 356.45 2.07 -83.15 By element: Atomic # 1 Polarization: 17.48 SS G_CDS: 0.26 Total: 17.74 kcal Atomic # 6 Polarization: 7.44 SS G_CDS: 6.96 Total: 14.40 kcal Atomic # 7 Polarization: -127.54 SS G_CDS: -6.75 Total: -134.30 kcal Atomic # 8 Polarization: -39.61 SS G_CDS: -0.11 Total: -39.72 kcal Atomic # 14 Polarization: 57.00 SS G_CDS: 1.72 Total: 58.72 kcal Total: -85.22 2.07 -83.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031458220.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.581 kcal (2) G-P(sol) polarization free energy of solvation -85.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.150 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds