Wall clock time and date at job start Tue Mar 31 2020 11:03:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.21276 * 120.00267 * 2 1 4 4 N 1.34777 * 119.99513 * 179.97438 * 2 1 3 5 5 C 1.39445 * 119.99593 * 185.32411 * 4 2 1 6 6 C 1.39136 * 119.92897 * 34.82480 * 5 4 2 7 7 C 1.37670 * 120.07247 * 179.97438 * 6 5 4 8 8 C 1.39747 * 119.92550 * 0.02562 * 7 6 5 9 9 C 1.47598 * 120.06847 * 179.97438 * 8 7 6 10 10 O 1.21586 * 120.00532 * 0.02562 * 9 8 7 11 11 N 1.34780 * 119.99955 * 179.97438 * 9 8 7 12 12 C 1.46501 * 120.00287 * 179.97438 * 11 9 8 13 13 C 1.52998 * 109.47044 * 180.02562 * 12 11 9 14 14 C 1.53503 * 114.20471 * 175.00141 * 13 12 11 15 15 N 1.47069 * 87.98200 * 87.52156 * 14 13 12 16 16 C 1.36934 * 136.05365 * 206.85784 * 15 14 13 17 17 H 1.07996 * 120.00517 * 355.01564 * 16 15 14 18 18 C 1.38816 * 119.99639 * 175.01300 * 16 15 14 19 19 N 1.31621 * 120.00071 * 354.98492 * 18 16 15 20 20 Si 1.86801 * 119.99976 * 174.98175 * 18 16 15 21 21 H 1.48500 * 109.47346 * 95.00029 * 20 18 16 22 22 H 1.48499 * 109.47379 * 215.00242 * 20 18 16 23 23 H 1.48498 * 109.47063 * 335.00290 * 20 18 16 24 24 C 1.47067 * 87.88660 * 27.12004 * 15 14 13 25 25 C 1.39746 * 119.85722 * 0.27344 * 8 7 6 26 26 C 1.37671 * 119.92002 * 359.46647 * 25 8 7 27 27 H 1.09000 * 109.47638 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47493 * 300.00059 * 1 2 3 29 29 H 1.09006 * 109.47163 * 60.00104 * 1 2 3 30 30 H 0.96998 * 120.00255 * 5.32135 * 4 2 1 31 31 H 1.07993 * 119.95867 * 359.97438 * 6 5 4 32 32 H 1.07998 * 120.03449 * 179.97438 * 7 6 5 33 33 H 0.96999 * 119.99559 * 0.02562 * 11 9 8 34 34 H 1.09003 * 109.46640 * 60.00556 * 12 11 9 35 35 H 1.09000 * 109.47241 * 300.00946 * 12 11 9 36 36 H 1.09000 * 113.28323 * 41.94255 * 13 12 11 37 37 H 1.08994 * 113.46486 * 332.74528 * 14 13 12 38 38 H 1.08998 * 113.51848 * 202.30988 * 14 13 12 39 39 H 0.97002 * 119.99900 * 180.02562 * 19 18 16 40 40 H 1.09004 * 113.46536 * 87.65421 * 24 15 14 41 41 H 1.09000 * 113.47046 * 218.09387 * 24 15 14 42 42 H 1.08000 * 120.03977 * 179.72813 * 25 8 7 43 43 H 1.08005 * 119.96219 * 180.23458 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1807 -1.1673 0.0005 5 6 3.5707 -1.1698 0.1126 6 6 4.2054 -0.2139 0.8995 7 6 5.5775 -0.2141 1.0126 8 6 6.3327 -1.1754 0.3356 9 6 7.8039 -1.1781 0.4542 10 8 8.3600 -0.3437 1.1419 11 7 8.5310 -2.1062 -0.1989 12 6 9.9913 -2.1086 -0.0817 13 6 10.5679 -3.2547 -0.9153 14 6 12.1017 -3.2850 -0.9676 15 7 12.0761 -4.0881 0.2642 16 6 12.9212 -4.3003 1.3206 17 1 13.9085 -3.8627 1.3187 18 6 12.5086 -5.0778 2.3940 19 7 11.2732 -5.5291 2.4434 20 14 13.7069 -5.4836 3.7684 21 1 13.5443 -4.5038 4.8723 22 1 13.4326 -6.8518 4.2764 23 1 15.0966 -5.4179 3.2490 24 6 10.7464 -4.5681 -0.1412 25 6 5.6925 -2.1302 -0.4589 26 6 4.3197 -2.1278 -0.5635 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.6988 -2.0055 -0.0770 31 1 3.6211 0.5289 1.4220 32 1 6.0696 0.5284 1.6233 33 1 8.0873 -2.7721 -0.7472 34 1 10.2716 -2.2420 0.9632 35 1 10.3866 -1.1603 -0.4457 36 1 10.0853 -3.3665 -1.8862 37 1 12.5599 -2.3047 -0.8372 38 1 12.4970 -3.8237 -1.8289 39 1 10.9849 -6.0721 3.1937 40 1 10.7798 -5.4488 -0.7826 41 1 10.0522 -4.6788 0.6919 42 1 6.2736 -2.8718 -0.9869 43 1 3.8240 -2.8677 -1.1743 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032147579.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:13 Heat of formation + Delta-G solvation = 17.550955 kcal Electronic energy + Delta-G solvation = -25235.954141 eV Core-core repulsion = 21476.255144 eV Total energy + Delta-G solvation = -3759.698997 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.91968 -39.75279 -38.47489 -37.77942 -35.09424 -34.26863 -32.19564 -31.35331 -31.13964 -29.42773 -28.26380 -25.96073 -24.58708 -23.80005 -23.02223 -22.19318 -21.10719 -20.22586 -18.99690 -18.24048 -17.35064 -17.25390 -16.73246 -16.08966 -15.68700 -15.21005 -14.96938 -14.73302 -14.58390 -14.45024 -14.04544 -13.78169 -13.68133 -13.37231 -13.28147 -12.97220 -12.68321 -12.65867 -12.48739 -12.28054 -11.56424 -11.41942 -11.09385 -10.93211 -10.72705 -10.67148 -10.51065 -10.32700 -9.92912 -9.79554 -9.64634 -9.23629 -9.17443 -8.80155 -8.68601 -8.35935 -6.84458 -5.73915 -3.07464 0.66397 1.21690 2.09308 2.62111 3.01645 3.41879 3.45375 3.46732 3.48567 3.86704 4.23068 4.48443 4.58096 4.64844 4.70379 4.86605 4.87687 5.14304 5.16691 5.24453 5.31963 5.34617 5.35061 5.40269 5.62855 5.81167 5.88094 6.00323 6.03868 6.17448 6.19440 6.30603 6.38703 6.54560 6.61921 6.69713 6.73204 6.85618 6.91460 7.18113 7.33712 7.58537 7.64071 7.82226 8.01666 8.50756 9.05708 9.73183 10.66185 11.42265 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.023350 B = 0.002313 C = 0.002257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.857936 B =12101.664679 C =12405.359715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.508 3.492 3 O -0.522 6.522 4 N -0.674 5.674 5 C 0.161 3.839 6 C -0.129 4.129 7 C -0.040 4.040 8 C -0.140 4.140 9 C 0.554 3.446 10 O -0.540 6.540 11 N -0.716 5.716 12 C 0.151 3.849 13 C -0.160 4.160 14 C 0.127 3.873 15 N -0.609 5.609 16 C -0.217 4.217 17 H 0.080 0.920 18 C -0.008 4.008 19 N -0.917 5.917 20 Si 0.911 3.089 21 H -0.288 1.288 22 H -0.290 1.290 23 H -0.281 1.281 24 C 0.150 3.850 25 C -0.065 4.065 26 C -0.152 4.152 27 H 0.079 0.921 28 H 0.100 0.900 29 H 0.098 0.902 30 H 0.413 0.587 31 H 0.137 0.863 32 H 0.140 0.860 33 H 0.396 0.604 34 H 0.086 0.914 35 H 0.060 0.940 36 H 0.070 0.930 37 H 0.042 0.958 38 H 0.037 0.963 39 H 0.252 0.748 40 H 0.022 0.978 41 H 0.081 0.919 42 H 0.133 0.867 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.570 5.939 -9.036 25.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.297 3.703 3 O -0.397 6.397 4 N -0.320 5.320 5 C 0.067 3.933 6 C -0.150 4.150 7 C -0.060 4.060 8 C -0.144 4.144 9 C 0.341 3.659 10 O -0.418 6.418 11 N -0.367 5.367 12 C 0.028 3.972 13 C -0.180 4.180 14 C 0.000 4.000 15 N -0.335 5.335 16 C -0.344 4.344 17 H 0.098 0.902 18 C -0.205 4.205 19 N -0.564 5.564 20 Si 0.742 3.258 21 H -0.215 1.215 22 H -0.217 1.217 23 H -0.206 1.206 24 C 0.024 3.976 25 C -0.085 4.085 26 C -0.173 4.173 27 H 0.098 0.902 28 H 0.118 0.882 29 H 0.117 0.883 30 H 0.249 0.751 31 H 0.155 0.845 32 H 0.158 0.842 33 H 0.231 0.769 34 H 0.104 0.896 35 H 0.078 0.922 36 H 0.088 0.912 37 H 0.060 0.940 38 H 0.054 0.946 39 H 0.062 0.938 40 H 0.040 0.960 41 H 0.099 0.901 42 H 0.151 0.849 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -22.660 7.177 -8.194 25.142 hybrid contribution 0.176 -1.322 0.305 1.368 sum -22.484 5.855 -7.890 24.537 Atomic orbital electron populations 1.21862 0.90552 1.04651 1.05830 1.21065 0.90973 0.83145 0.75115 1.90785 1.70469 1.31155 1.47268 1.43644 1.05370 1.10091 1.72898 1.17896 0.82737 0.97015 0.95672 1.21046 0.94569 1.00010 0.99328 1.21176 0.92641 0.96330 0.95853 1.20061 0.93520 0.98759 1.02089 1.18124 0.86476 0.81511 0.79805 1.90783 1.72647 1.38553 1.39845 1.45935 1.08404 1.32417 1.49905 1.21049 0.77000 0.97047 1.02100 1.23251 0.98004 0.98521 0.98193 1.22354 0.91795 0.95330 0.90532 1.45546 1.18827 1.50911 1.18195 1.18915 0.94818 1.27053 0.93635 0.90228 1.24781 0.96657 1.00811 0.98205 1.69816 1.15412 1.39615 1.31585 0.86110 0.80071 0.77538 0.82107 1.21511 1.21681 1.20645 1.22257 0.89324 0.90612 0.95388 1.21134 0.94007 0.96906 0.96405 1.20784 0.93813 1.01070 1.01610 0.90235 0.88183 0.88308 0.75097 0.84545 0.84204 0.76914 0.89563 0.92182 0.91157 0.93988 0.94597 0.93751 0.96020 0.90109 0.84925 0.85086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.54 10.39 36.00 0.37 -0.16 16 2 C 0.51 3.98 7.66 -10.99 -0.08 3.89 16 3 O -0.52 -6.58 14.87 5.56 0.08 -6.50 16 4 N -0.67 -4.52 5.31 -9.86 -0.05 -4.57 16 5 C 0.16 1.60 6.25 -83.73 -0.52 1.08 16 6 C -0.13 -1.56 8.62 -39.46 -0.34 -1.90 16 7 C -0.04 -0.55 9.58 -39.23 -0.38 -0.92 16 8 C -0.14 -1.94 5.88 -104.95 -0.62 -2.56 16 9 C 0.55 9.47 7.76 -12.44 -0.10 9.37 16 10 O -0.54 -11.37 16.34 5.29 0.09 -11.28 16 11 N -0.72 -11.25 5.51 -61.33 -0.34 -11.59 16 12 C 0.15 2.80 5.50 -4.04 -0.02 2.77 16 13 C -0.16 -2.87 4.18 -90.10 -0.38 -3.24 16 14 C 0.13 2.56 8.26 -8.49 -0.07 2.49 16 15 N -0.61 -15.57 3.61 -184.74 -0.67 -16.24 16 16 C -0.22 -6.15 10.74 -15.06 -0.16 -6.31 16 17 H 0.08 2.19 7.83 -52.49 -0.41 1.78 16 18 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 19 N -0.92 -27.35 11.42 55.49 0.63 -26.72 16 20 Si 0.91 22.53 29.56 -169.99 -5.02 17.50 16 21 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 22 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 23 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 24 C 0.15 3.42 7.09 -8.50 -0.06 3.36 16 25 C -0.07 -0.69 9.53 -39.23 -0.37 -1.06 16 26 C -0.15 -1.36 9.94 -39.46 -0.39 -1.75 16 27 H 0.08 0.04 7.92 -51.93 -0.41 -0.37 16 28 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.10 0.27 8.14 -51.93 -0.42 -0.16 16 30 H 0.41 1.21 8.66 -40.82 -0.35 0.86 16 31 H 0.14 1.67 6.51 -52.49 -0.34 1.33 16 32 H 0.14 1.95 7.64 -52.49 -0.40 1.54 16 33 H 0.40 4.95 6.49 -40.82 -0.27 4.68 16 34 H 0.09 2.01 7.92 -51.93 -0.41 1.60 16 35 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 37 H 0.04 0.82 8.12 -51.93 -0.42 0.40 16 38 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 40 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.08 2.07 6.82 -51.93 -0.35 1.71 16 42 H 0.13 1.11 6.39 -52.49 -0.34 0.78 16 43 H 0.13 0.77 8.06 -52.48 -0.42 0.34 16 LS Contribution 364.32 15.07 5.49 5.49 Total: -1.00 -37.33 364.32 -8.80 -46.13 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -5.80 Total: 3.05 kcal Atomic # 6 Polarization: 7.94 SS G_CDS: -3.22 Total: 4.72 kcal Atomic # 7 Polarization: -58.69 SS G_CDS: -0.42 Total: -59.12 kcal Atomic # 8 Polarization: -17.95 SS G_CDS: 0.17 Total: -17.78 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -37.33 -8.80 -46.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032147579.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.686 kcal (2) G-P(sol) polarization free energy of solvation -37.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.135 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds