Wall clock time and date at job start Tue Mar 31 2020 11:03:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.21276 * 120.00267 * 2 1 4 4 N 1.34777 * 119.99513 * 179.97438 * 2 1 3 5 5 C 1.39445 * 119.99593 * 185.32411 * 4 2 1 6 6 C 1.39136 * 119.92897 * 34.82480 * 5 4 2 7 7 C 1.37670 * 120.07247 * 179.97438 * 6 5 4 8 8 C 1.39747 * 119.92550 * 0.02562 * 7 6 5 9 9 C 1.47598 * 120.06847 * 179.97438 * 8 7 6 10 10 O 1.21586 * 120.00532 * 0.02562 * 9 8 7 11 11 N 1.34780 * 119.99955 * 179.97438 * 9 8 7 12 12 C 1.46501 * 120.00287 * 179.97438 * 11 9 8 13 13 C 1.52998 * 109.47044 * 180.02562 * 12 11 9 14 14 C 1.53503 * 114.20471 * 175.00141 * 13 12 11 15 15 N 1.47069 * 87.98200 * 87.52156 * 14 13 12 16 16 C 1.36934 * 136.05365 * 206.85784 * 15 14 13 17 17 H 1.07996 * 120.00517 * 355.01564 * 16 15 14 18 18 C 1.38816 * 119.99639 * 175.01300 * 16 15 14 19 19 N 1.31621 * 120.00071 * 354.98492 * 18 16 15 20 20 Si 1.86801 * 119.99976 * 174.98175 * 18 16 15 21 21 H 1.48500 * 109.47346 * 95.00029 * 20 18 16 22 22 H 1.48499 * 109.47379 * 215.00242 * 20 18 16 23 23 H 1.48498 * 109.47063 * 335.00290 * 20 18 16 24 24 C 1.47067 * 87.88660 * 27.12004 * 15 14 13 25 25 C 1.39746 * 119.85722 * 0.27344 * 8 7 6 26 26 C 1.37671 * 119.92002 * 359.46647 * 25 8 7 27 27 H 1.09000 * 109.47638 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47493 * 300.00059 * 1 2 3 29 29 H 1.09006 * 109.47163 * 60.00104 * 1 2 3 30 30 H 0.96998 * 120.00255 * 5.32135 * 4 2 1 31 31 H 1.07993 * 119.95867 * 359.97438 * 6 5 4 32 32 H 1.07998 * 120.03449 * 179.97438 * 7 6 5 33 33 H 0.96999 * 119.99559 * 0.02562 * 11 9 8 34 34 H 1.09003 * 109.46640 * 60.00556 * 12 11 9 35 35 H 1.09000 * 109.47241 * 300.00946 * 12 11 9 36 36 H 1.09000 * 113.28323 * 41.94255 * 13 12 11 37 37 H 1.08994 * 113.46486 * 332.74528 * 14 13 12 38 38 H 1.08998 * 113.51848 * 202.30988 * 14 13 12 39 39 H 0.97002 * 119.99900 * 180.02562 * 19 18 16 40 40 H 1.09004 * 113.46536 * 87.65421 * 24 15 14 41 41 H 1.09000 * 113.47046 * 218.09387 * 24 15 14 42 42 H 1.08000 * 120.03977 * 179.72813 * 25 8 7 43 43 H 1.08005 * 119.96219 * 180.23458 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1807 -1.1673 0.0005 5 6 3.5707 -1.1698 0.1126 6 6 4.2054 -0.2139 0.8995 7 6 5.5775 -0.2141 1.0126 8 6 6.3327 -1.1754 0.3356 9 6 7.8039 -1.1781 0.4542 10 8 8.3600 -0.3437 1.1419 11 7 8.5310 -2.1062 -0.1989 12 6 9.9913 -2.1086 -0.0817 13 6 10.5679 -3.2547 -0.9153 14 6 12.1017 -3.2850 -0.9676 15 7 12.0761 -4.0881 0.2642 16 6 12.9212 -4.3003 1.3206 17 1 13.9085 -3.8627 1.3187 18 6 12.5086 -5.0778 2.3940 19 7 11.2732 -5.5291 2.4434 20 14 13.7069 -5.4836 3.7684 21 1 13.5443 -4.5038 4.8723 22 1 13.4326 -6.8518 4.2764 23 1 15.0966 -5.4179 3.2490 24 6 10.7464 -4.5681 -0.1412 25 6 5.6925 -2.1302 -0.4589 26 6 4.3197 -2.1278 -0.5635 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.6988 -2.0055 -0.0770 31 1 3.6211 0.5289 1.4220 32 1 6.0696 0.5284 1.6233 33 1 8.0873 -2.7721 -0.7472 34 1 10.2716 -2.2420 0.9632 35 1 10.3866 -1.1603 -0.4457 36 1 10.0853 -3.3665 -1.8862 37 1 12.5599 -2.3047 -0.8372 38 1 12.4970 -3.8237 -1.8289 39 1 10.9849 -6.0721 3.1937 40 1 10.7798 -5.4488 -0.7826 41 1 10.0522 -4.6788 0.6919 42 1 6.2736 -2.8718 -0.9869 43 1 3.8240 -2.8677 -1.1743 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032147579.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:12 Heat of formation + Delta-G solvation = -10.276132 kcal Electronic energy + Delta-G solvation = -25237.160814 eV Core-core repulsion = 21476.255144 eV Total energy + Delta-G solvation = -3760.905670 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.72178 -40.96053 -39.95024 -38.93719 -35.91129 -35.74857 -34.21607 -32.18609 -31.95116 -30.55084 -29.60349 -27.60402 -26.30905 -24.86564 -24.29812 -23.58272 -21.98460 -21.31273 -20.52743 -19.14202 -18.74098 -18.32729 -17.99882 -17.27966 -16.93443 -16.55248 -16.48558 -16.07717 -15.69102 -15.56284 -15.33557 -15.09399 -14.71445 -14.54842 -14.30967 -14.15640 -13.80866 -13.73075 -13.40307 -13.22296 -13.02197 -12.91185 -12.84088 -12.54171 -12.33303 -12.23732 -11.83841 -11.61288 -11.49586 -11.21536 -11.03144 -10.95029 -10.85062 -10.11837 -10.05138 -9.23483 -8.86946 -7.89176 -5.22274 -0.29070 0.34903 1.41115 1.43308 1.45382 1.53833 1.89513 2.07989 2.15069 2.47223 2.84479 3.31155 3.52547 3.65075 3.70495 3.80728 3.84089 3.94238 4.00318 4.27118 4.35201 4.46678 4.54598 4.55041 4.63383 4.67029 4.79893 4.88981 4.95837 4.99562 5.03727 5.09932 5.12738 5.19102 5.26331 5.30235 5.39021 5.41617 5.56060 5.66615 5.87026 5.99857 6.39835 6.56548 6.92741 7.09671 7.21809 7.62079 8.63134 9.26659 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.023350 B = 0.002313 C = 0.002257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.857936 B =12101.664679 C =12405.359715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.503 3.497 3 O -0.577 6.577 4 N -0.659 5.659 5 C 0.168 3.832 6 C -0.143 4.143 7 C -0.057 4.057 8 C -0.165 4.165 9 C 0.550 3.450 10 O -0.593 6.593 11 N -0.702 5.702 12 C 0.161 3.839 13 C -0.123 4.123 14 C 0.124 3.876 15 N -0.645 5.645 16 C -0.226 4.226 17 H 0.080 0.920 18 C -0.069 4.069 19 N -0.948 5.948 20 Si 0.974 3.026 21 H -0.292 1.292 22 H -0.292 1.292 23 H -0.267 1.267 24 C 0.146 3.854 25 C -0.056 4.056 26 C -0.139 4.139 27 H 0.114 0.886 28 H 0.104 0.896 29 H 0.106 0.894 30 H 0.434 0.566 31 H 0.127 0.873 32 H 0.119 0.881 33 H 0.415 0.585 34 H 0.030 0.970 35 H 0.066 0.934 36 H 0.124 0.876 37 H 0.046 0.954 38 H 0.063 0.937 39 H 0.246 0.754 40 H 0.028 0.972 41 H 0.045 0.955 42 H 0.161 0.839 43 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.717 4.487 -11.601 28.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.294 3.706 3 O -0.455 6.455 4 N -0.307 5.307 5 C 0.072 3.928 6 C -0.164 4.164 7 C -0.077 4.077 8 C -0.169 4.169 9 C 0.339 3.661 10 O -0.475 6.475 11 N -0.354 5.354 12 C 0.037 3.963 13 C -0.142 4.142 14 C -0.001 4.001 15 N -0.371 5.371 16 C -0.354 4.354 17 H 0.098 0.902 18 C -0.262 4.262 19 N -0.597 5.597 20 Si 0.803 3.197 21 H -0.219 1.219 22 H -0.218 1.218 23 H -0.192 1.192 24 C 0.021 3.979 25 C -0.075 4.075 26 C -0.159 4.159 27 H 0.132 0.868 28 H 0.123 0.877 29 H 0.125 0.875 30 H 0.275 0.725 31 H 0.145 0.855 32 H 0.137 0.863 33 H 0.253 0.747 34 H 0.048 0.952 35 H 0.084 0.916 36 H 0.142 0.858 37 H 0.064 0.936 38 H 0.080 0.920 39 H 0.055 0.945 40 H 0.046 0.954 41 H 0.063 0.937 42 H 0.178 0.822 43 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -24.847 5.675 -10.822 27.689 hybrid contribution 0.742 -0.831 1.047 1.529 sum -24.105 4.845 -9.775 26.459 Atomic orbital electron populations 1.21910 0.86507 1.07163 1.06354 1.22006 0.92812 0.82352 0.73405 1.90774 1.71882 1.33171 1.49709 1.43645 1.04048 1.11155 1.71826 1.18077 0.84491 0.96000 0.94215 1.20996 0.93819 1.01017 1.00530 1.21077 0.93514 0.96556 0.96519 1.19844 0.91317 1.00916 1.04792 1.18705 0.87980 0.80664 0.78708 1.90746 1.73928 1.40689 1.42139 1.45718 1.07201 1.32610 1.49860 1.20717 0.78837 0.97724 0.99000 1.22991 0.97027 0.94915 0.99311 1.22598 0.93455 0.95009 0.89070 1.45913 1.19603 1.52187 1.19436 1.19269 0.95245 1.26112 0.94784 0.90210 1.25591 0.98316 1.01587 1.00706 1.69998 1.16954 1.40632 1.32070 0.85119 0.78719 0.76767 0.79103 1.21901 1.21796 1.19203 1.22262 0.87606 0.93149 0.94908 1.21442 0.95104 0.95934 0.95035 1.21200 0.92999 1.00964 1.00728 0.86767 0.87720 0.87522 0.72463 0.85509 0.86329 0.74681 0.95154 0.91613 0.85783 0.93568 0.91971 0.94479 0.95392 0.93671 0.82199 0.80620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.51 10.39 71.23 0.74 0.23 16 2 C 0.50 6.93 7.66 87.65 0.67 7.60 16 3 O -0.58 -14.53 14.87 -3.02 -0.04 -14.57 16 4 N -0.66 -6.87 5.31 -303.49 -1.61 -8.48 16 5 C 0.17 2.99 6.25 38.36 0.24 3.23 16 6 C -0.14 -3.54 8.62 22.35 0.19 -3.35 16 7 C -0.06 -1.64 9.58 22.50 0.22 -1.43 16 8 C -0.16 -4.60 5.88 -20.08 -0.12 -4.72 16 9 C 0.55 19.43 7.76 86.71 0.67 20.10 16 10 O -0.59 -26.71 16.34 -3.99 -0.07 -26.78 16 11 N -0.70 -21.71 5.51 -466.20 -2.57 -24.28 16 12 C 0.16 6.00 5.50 86.38 0.47 6.47 16 13 C -0.12 -4.16 4.18 -10.46 -0.04 -4.20 16 14 C 0.12 4.79 8.26 83.19 0.69 5.47 16 15 N -0.64 -33.09 3.61 -738.38 -2.66 -35.76 16 16 C -0.23 -12.99 10.74 84.03 0.90 -12.09 16 17 H 0.08 4.43 7.83 -2.91 -0.02 4.41 16 18 C -0.07 -4.04 5.50 84.86 0.47 -3.57 16 19 N -0.95 -58.22 11.42 21.65 0.25 -57.98 16 20 Si 0.97 47.31 29.56 68.60 2.03 49.34 16 21 H -0.29 -14.19 7.11 99.48 0.71 -13.49 16 22 H -0.29 -14.06 7.11 99.48 0.71 -13.36 16 23 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 24 C 0.15 6.61 7.09 83.18 0.59 7.20 16 25 C -0.06 -1.04 9.53 22.50 0.21 -0.83 16 26 C -0.14 -1.96 9.94 22.35 0.22 -1.74 16 27 H 0.11 -0.42 7.92 -2.39 -0.02 -0.44 16 28 H 0.10 0.32 8.14 -2.39 -0.02 0.30 16 29 H 0.11 0.25 8.14 -2.38 -0.02 0.23 16 30 H 0.43 0.62 8.66 -92.71 -0.80 -0.18 16 31 H 0.13 3.32 6.51 -2.91 -0.02 3.30 16 32 H 0.12 3.77 7.64 -2.91 -0.02 3.75 16 33 H 0.41 9.37 6.49 -92.71 -0.60 8.77 16 34 H 0.03 1.48 7.92 -2.39 -0.02 1.46 16 35 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 36 H 0.12 2.98 8.14 -2.39 -0.02 2.97 16 37 H 0.05 1.74 8.12 -2.39 -0.02 1.72 16 38 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 39 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 40 H 0.03 1.24 8.14 -2.38 -0.02 1.22 16 41 H 0.04 2.36 6.82 -2.39 -0.02 2.35 16 42 H 0.16 2.02 6.39 -2.91 -0.02 2.00 16 43 H 0.18 0.96 8.06 -2.91 -0.02 0.94 16 Total: -1.00 -88.34 364.32 1.10 -87.25 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: -0.35 Total: 12.88 kcal Atomic # 6 Polarization: 12.25 SS G_CDS: 6.13 Total: 18.38 kcal Atomic # 7 Polarization: -119.90 SS G_CDS: -6.59 Total: -126.50 kcal Atomic # 8 Polarization: -41.24 SS G_CDS: -0.11 Total: -41.35 kcal Atomic # 14 Polarization: 47.31 SS G_CDS: 2.03 Total: 49.34 kcal Total: -88.34 1.10 -87.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032147579.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.969 kcal (2) G-P(sol) polarization free energy of solvation -88.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds