Wall clock time and date at job start Tue Mar 31 2020 11:32:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34768 * 120.00051 * 2 1 4 4 O 1.21554 * 120.00440 * 359.97438 * 3 2 1 5 5 C 1.47866 * 120.00091 * 179.97438 * 3 2 1 6 6 C 1.39708 * 120.06799 * 0.02562 * 5 3 2 7 7 C 1.38055 * 120.14055 * 179.97438 * 6 5 3 8 8 C 1.38100 * 120.29801 * 359.97054 * 7 6 5 9 9 C 1.39661 * 120.14687 * 0.02562 * 8 7 6 10 10 C 1.47857 * 120.07727 * 179.97438 * 9 8 7 11 11 O 1.21547 * 120.00127 * 179.97438 * 10 9 8 12 12 N 1.34778 * 119.99779 * 359.97438 * 10 9 8 13 13 C 1.46501 * 120.00016 * 180.02562 * 12 10 9 14 14 C 1.53001 * 109.47379 * 179.97438 * 13 12 10 15 15 C 1.53495 * 114.20602 * 175.00131 * 14 13 12 16 16 N 1.47064 * 87.98647 * 87.71660 * 15 14 13 17 17 C 1.36929 * 136.05710 * 207.07951 * 16 15 14 18 18 H 1.08003 * 120.00152 * 6.50021 * 17 16 15 19 19 C 1.38818 * 120.00175 * 186.49548 * 17 16 15 20 20 N 1.31615 * 119.99847 * 6.43003 * 19 17 16 21 21 Si 1.86802 * 119.99925 * 186.42380 * 19 17 16 22 22 H 1.48502 * 109.46990 * 265.01960 * 21 19 17 23 23 H 1.48491 * 109.47236 * 25.02406 * 21 19 17 24 24 H 1.48506 * 109.46777 * 145.02360 * 21 19 17 25 25 C 1.47067 * 87.88549 * 27.33957 * 16 15 14 26 26 C 1.39289 * 120.07519 * 180.23049 * 5 3 2 27 27 H 1.08996 * 109.47327 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47303 * 300.00479 * 1 2 3 29 29 H 1.09007 * 109.47108 * 59.99688 * 1 2 3 30 30 H 0.96996 * 119.99592 * 180.02562 * 2 1 3 31 31 H 1.07997 * 119.92985 * 359.96901 * 6 5 3 32 32 H 1.08004 * 119.85128 * 179.97438 * 7 6 5 33 33 H 1.08005 * 119.92908 * 180.02562 * 8 7 6 34 34 H 0.96994 * 120.00340 * 359.97438 * 12 10 9 35 35 H 1.09001 * 109.46921 * 59.99536 * 13 12 10 36 36 H 1.08998 * 109.46807 * 300.00283 * 13 12 10 37 37 H 1.08998 * 113.27713 * 41.92709 * 14 13 12 38 38 H 1.08996 * 113.46596 * 332.93558 * 15 14 13 39 39 H 1.09006 * 113.46151 * 202.49749 * 15 14 13 40 40 H 0.97003 * 120.00226 * 179.97438 * 20 19 17 41 41 H 1.09005 * 113.46771 * 87.43754 * 25 16 15 42 42 H 1.09002 * 113.46911 * 217.87594 * 25 16 15 43 43 H 1.07997 * 120.14816 * 0.02562 * 26 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5312 2.2199 -0.0005 5 6 3.6175 1.1671 0.0006 6 6 4.3175 -0.0419 0.0006 7 6 5.6981 -0.0437 0.0006 8 6 6.3963 1.1478 0.0000 9 6 5.7089 2.3636 -0.0001 10 6 6.4580 3.6383 -0.0002 11 8 5.8584 4.6956 -0.0008 12 7 7.8057 3.6279 0.0003 13 6 8.5480 4.8910 0.0008 14 6 10.0501 4.5999 0.0020 15 6 10.9334 5.8493 -0.1194 16 7 10.8790 5.9666 1.3455 17 6 10.9749 6.9836 2.2574 18 1 11.0250 8.0084 1.9202 19 6 11.0076 6.6974 3.6154 20 7 11.0742 5.4478 4.0232 21 14 10.9572 8.0860 4.8640 22 1 12.3421 8.4407 5.2659 23 1 10.2982 9.2715 4.2596 24 1 10.1914 7.6494 6.0591 25 6 10.6828 4.5101 1.4004 26 6 4.3155 2.3725 0.0054 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5139 -0.8900 30 1 1.9499 -0.8400 -0.0004 31 1 3.7775 -0.9772 0.0007 32 1 6.2345 -0.9811 0.0010 33 1 7.4763 1.1395 -0.0005 34 1 8.2843 2.7843 0.0011 35 1 8.2887 5.4644 0.8907 36 1 8.2894 5.4647 -0.8892 37 1 10.3317 3.7865 -0.6668 38 1 10.4480 6.6752 -0.6393 39 1 11.9325 5.6390 -0.5013 40 1 11.0975 5.2478 4.9721 41 1 11.6159 3.9469 1.4193 42 1 9.9840 4.1951 2.1754 43 1 3.7792 3.3099 0.0092 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032195657.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:28 Heat of formation + Delta-G solvation = 17.507035 kcal Electronic energy + Delta-G solvation = -25232.916569 eV Core-core repulsion = 21473.215668 eV Total energy + Delta-G solvation = -3759.700901 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.67094 -39.67711 -38.46104 -37.77170 -35.05646 -34.40640 -32.31505 -31.78242 -31.35787 -28.64345 -27.35648 -26.11750 -24.63267 -24.19574 -23.19997 -22.22658 -21.37866 -20.23366 -19.30338 -18.26341 -16.84970 -16.73564 -16.44915 -16.36114 -15.80283 -15.58811 -15.24376 -14.75983 -14.73268 -14.53505 -14.06445 -14.02344 -13.76627 -13.50318 -13.27190 -12.77764 -12.75267 -12.57699 -12.33887 -12.28858 -11.64009 -11.54183 -11.15160 -11.00144 -10.74690 -10.52783 -10.35035 -9.97196 -9.83819 -9.77599 -9.61385 -9.35153 -9.31528 -9.26101 -8.77923 -8.72456 -6.88672 -5.78331 -3.08783 0.34753 0.80879 2.35265 2.75450 3.04375 3.29815 3.40891 3.46745 3.48864 3.71579 4.24683 4.37262 4.47635 4.49298 4.74196 4.78994 4.86970 5.06968 5.11345 5.23897 5.24735 5.28210 5.37337 5.41471 5.57055 5.58044 5.87831 5.91457 5.94582 5.98530 5.99544 6.12946 6.34742 6.41553 6.51615 6.56356 6.62659 6.77621 7.04386 7.15221 7.23878 7.52197 7.67659 7.83757 7.97081 8.35471 9.04067 9.70792 10.64158 11.40493 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.019035 B = 0.002453 C = 0.002345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.609653 B =11412.928871 C =11935.381130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.734 5.734 3 C 0.559 3.441 4 O -0.528 6.528 5 C -0.147 4.147 6 C -0.068 4.068 7 C -0.132 4.132 8 C -0.059 4.059 9 C -0.132 4.132 10 C 0.552 3.448 11 O -0.532 6.532 12 N -0.715 5.715 13 C 0.150 3.850 14 C -0.163 4.163 15 C 0.126 3.874 16 N -0.608 5.608 17 C -0.218 4.218 18 H 0.081 0.919 19 C -0.007 4.007 20 N -0.920 5.920 21 Si 0.911 3.089 22 H -0.289 1.289 23 H -0.279 1.279 24 H -0.290 1.290 25 C 0.166 3.834 26 C -0.002 4.002 27 H 0.076 0.924 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.401 0.599 31 H 0.129 0.871 32 H 0.137 0.863 33 H 0.135 0.865 34 H 0.397 0.603 35 H 0.084 0.916 36 H 0.063 0.937 37 H 0.072 0.928 38 H 0.043 0.957 39 H 0.036 0.964 40 H 0.253 0.747 41 H 0.030 0.970 42 H 0.062 0.938 43 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.346 -19.305 -11.159 26.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.386 5.386 3 C 0.346 3.654 4 O -0.405 6.405 5 C -0.150 4.150 6 C -0.086 4.086 7 C -0.150 4.150 8 C -0.078 4.078 9 C -0.135 4.135 10 C 0.338 3.662 11 O -0.410 6.410 12 N -0.366 5.366 13 C 0.028 3.972 14 C -0.183 4.183 15 C -0.001 4.001 16 N -0.334 5.334 17 C -0.345 4.345 18 H 0.099 0.901 19 C -0.204 4.204 20 N -0.567 5.567 21 Si 0.741 3.259 22 H -0.217 1.217 23 H -0.204 1.204 24 H -0.216 1.216 25 C 0.040 3.960 26 C -0.022 4.022 27 H 0.095 0.905 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.236 0.764 31 H 0.146 0.854 32 H 0.155 0.845 33 H 0.153 0.847 34 H 0.232 0.768 35 H 0.103 0.897 36 H 0.081 0.919 37 H 0.090 0.910 38 H 0.061 0.939 39 H 0.053 0.947 40 H 0.063 0.937 41 H 0.047 0.953 42 H 0.080 0.920 43 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -15.214 -17.577 -10.814 25.639 hybrid contribution 0.757 -0.325 0.824 1.165 sum -14.457 -17.902 -9.990 25.086 Atomic orbital electron populations 1.21569 0.79046 1.02341 1.02679 1.45682 1.07971 1.08508 1.76471 1.18266 0.87150 0.83801 0.76149 1.90820 1.69801 1.31068 1.48789 1.19817 0.92796 0.94266 1.08157 1.21424 0.94759 0.96725 0.95741 1.21050 0.93799 0.98444 1.01707 1.21618 1.00529 0.91629 0.94041 1.20058 0.94026 0.93691 1.05710 1.18110 0.82388 0.88460 0.77230 1.90808 1.68677 1.32027 1.49486 1.45952 1.05690 1.10649 1.74347 1.21070 0.89152 0.84175 1.02839 1.23324 0.93698 0.99722 1.01550 1.22355 0.95591 0.93937 0.88201 1.45737 1.84240 1.03402 1.00069 1.18950 1.43842 0.86057 0.85677 0.90084 1.24811 1.02209 0.96564 0.96825 1.69835 1.56233 1.16495 1.14146 0.86112 0.77462 0.81126 0.81168 1.21659 1.20435 1.21591 1.22079 0.96380 0.86340 0.91239 1.21411 0.92541 0.98544 0.89655 0.90493 0.91954 0.91993 0.76424 0.85356 0.84519 0.84708 0.76806 0.89737 0.91864 0.90980 0.93917 0.94664 0.93693 0.95274 0.91970 0.83189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.50 10.70 59.85 0.64 1.14 16 2 N -0.73 -5.12 5.66 -68.04 -0.39 -5.51 16 3 C 0.56 6.29 7.77 -12.32 -0.10 6.19 16 4 O -0.53 -8.21 16.34 5.32 0.09 -8.12 16 5 C -0.15 -1.55 5.87 -105.02 -0.62 -2.16 16 6 C -0.07 -0.47 9.54 -39.10 -0.37 -0.84 16 7 C -0.13 -0.91 10.02 -39.70 -0.40 -1.30 16 8 C -0.06 -0.53 9.54 -39.10 -0.37 -0.91 16 9 C -0.13 -1.67 5.87 -105.02 -0.62 -2.29 16 10 C 0.55 8.87 7.77 -12.32 -0.10 8.77 16 11 O -0.53 -10.82 16.34 5.32 0.09 -10.73 16 12 N -0.72 -10.44 5.51 -61.25 -0.34 -10.77 16 13 C 0.15 2.63 5.52 -4.04 -0.02 2.61 16 14 C -0.16 -2.82 4.17 -89.97 -0.37 -3.19 16 15 C 0.13 2.51 8.25 -8.51 -0.07 2.44 16 16 N -0.61 -15.45 3.60 -184.60 -0.67 -16.11 16 17 C -0.22 -6.16 10.73 -15.06 -0.16 -6.32 16 18 H 0.08 2.22 7.84 -52.48 -0.41 1.81 16 19 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 20 N -0.92 -27.49 11.81 55.49 0.66 -26.84 16 21 Si 0.91 22.57 29.56 -169.99 -5.02 17.55 16 22 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 23 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 25 C 0.17 3.72 6.75 -8.37 -0.06 3.66 16 26 C 0.00 -0.02 9.14 -38.78 -0.35 -0.38 16 27 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.41 8.14 -51.92 -0.42 -0.01 16 30 H 0.40 1.45 6.85 -40.82 -0.28 1.17 16 31 H 0.13 0.41 6.39 -52.49 -0.34 0.08 16 32 H 0.14 0.54 8.06 -52.48 -0.42 0.11 16 33 H 0.14 0.92 6.39 -52.48 -0.34 0.58 16 34 H 0.40 4.48 6.50 -40.82 -0.27 4.21 16 35 H 0.08 1.85 7.93 -51.93 -0.41 1.43 16 36 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.04 0.81 8.12 -51.93 -0.42 0.39 16 39 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 41 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.06 1.55 7.56 -51.93 -0.39 1.16 16 43 H 0.15 2.31 7.23 -52.49 -0.38 1.93 16 LS Contribution 365.44 15.07 5.51 5.51 Total: -1.00 -37.54 365.44 -8.89 -46.43 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: -5.75 Total: 1.48 kcal Atomic # 6 Polarization: 10.18 SS G_CDS: -3.06 Total: 7.12 kcal Atomic # 7 Polarization: -58.50 SS G_CDS: -0.73 Total: -59.23 kcal Atomic # 8 Polarization: -19.02 SS G_CDS: 0.17 Total: -18.85 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.55 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -37.54 -8.89 -46.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032195657.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.937 kcal (2) G-P(sol) polarization free energy of solvation -37.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.430 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds