Wall clock time and date at job start Tue Mar 31 2020 11:32:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34768 * 120.00051 * 2 1 4 4 O 1.21554 * 120.00440 * 359.97438 * 3 2 1 5 5 C 1.47866 * 120.00091 * 179.97438 * 3 2 1 6 6 C 1.39708 * 120.06799 * 0.02562 * 5 3 2 7 7 C 1.38055 * 120.14055 * 179.97438 * 6 5 3 8 8 C 1.38100 * 120.29801 * 359.97054 * 7 6 5 9 9 C 1.39661 * 120.14687 * 0.02562 * 8 7 6 10 10 C 1.47857 * 120.07727 * 179.97438 * 9 8 7 11 11 O 1.21547 * 120.00127 * 179.97438 * 10 9 8 12 12 N 1.34778 * 119.99779 * 359.97438 * 10 9 8 13 13 C 1.46501 * 120.00016 * 180.02562 * 12 10 9 14 14 C 1.53001 * 109.47379 * 179.97438 * 13 12 10 15 15 C 1.53495 * 114.20602 * 175.00131 * 14 13 12 16 16 N 1.47064 * 87.98647 * 87.71660 * 15 14 13 17 17 C 1.36929 * 136.05710 * 207.07951 * 16 15 14 18 18 H 1.08003 * 120.00152 * 6.50021 * 17 16 15 19 19 C 1.38818 * 120.00175 * 186.49548 * 17 16 15 20 20 N 1.31615 * 119.99847 * 6.43003 * 19 17 16 21 21 Si 1.86802 * 119.99925 * 186.42380 * 19 17 16 22 22 H 1.48502 * 109.46990 * 265.01960 * 21 19 17 23 23 H 1.48491 * 109.47236 * 25.02406 * 21 19 17 24 24 H 1.48506 * 109.46777 * 145.02360 * 21 19 17 25 25 C 1.47067 * 87.88549 * 27.33957 * 16 15 14 26 26 C 1.39289 * 120.07519 * 180.23049 * 5 3 2 27 27 H 1.08996 * 109.47327 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47303 * 300.00479 * 1 2 3 29 29 H 1.09007 * 109.47108 * 59.99688 * 1 2 3 30 30 H 0.96996 * 119.99592 * 180.02562 * 2 1 3 31 31 H 1.07997 * 119.92985 * 359.96901 * 6 5 3 32 32 H 1.08004 * 119.85128 * 179.97438 * 7 6 5 33 33 H 1.08005 * 119.92908 * 180.02562 * 8 7 6 34 34 H 0.96994 * 120.00340 * 359.97438 * 12 10 9 35 35 H 1.09001 * 109.46921 * 59.99536 * 13 12 10 36 36 H 1.08998 * 109.46807 * 300.00283 * 13 12 10 37 37 H 1.08998 * 113.27713 * 41.92709 * 14 13 12 38 38 H 1.08996 * 113.46596 * 332.93558 * 15 14 13 39 39 H 1.09006 * 113.46151 * 202.49749 * 15 14 13 40 40 H 0.97003 * 120.00226 * 179.97438 * 20 19 17 41 41 H 1.09005 * 113.46771 * 87.43754 * 25 16 15 42 42 H 1.09002 * 113.46911 * 217.87594 * 25 16 15 43 43 H 1.07997 * 120.14816 * 0.02562 * 26 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5312 2.2199 -0.0005 5 6 3.6175 1.1671 0.0006 6 6 4.3175 -0.0419 0.0006 7 6 5.6981 -0.0437 0.0006 8 6 6.3963 1.1478 0.0000 9 6 5.7089 2.3636 -0.0001 10 6 6.4580 3.6383 -0.0002 11 8 5.8584 4.6956 -0.0008 12 7 7.8057 3.6279 0.0003 13 6 8.5480 4.8910 0.0008 14 6 10.0501 4.5999 0.0020 15 6 10.9334 5.8493 -0.1194 16 7 10.8790 5.9666 1.3455 17 6 10.9749 6.9836 2.2574 18 1 11.0250 8.0084 1.9202 19 6 11.0076 6.6974 3.6154 20 7 11.0742 5.4478 4.0232 21 14 10.9572 8.0860 4.8640 22 1 12.3421 8.4407 5.2659 23 1 10.2982 9.2715 4.2596 24 1 10.1914 7.6494 6.0591 25 6 10.6828 4.5101 1.4004 26 6 4.3155 2.3725 0.0054 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5139 -0.8900 30 1 1.9499 -0.8400 -0.0004 31 1 3.7775 -0.9772 0.0007 32 1 6.2345 -0.9811 0.0010 33 1 7.4763 1.1395 -0.0005 34 1 8.2843 2.7843 0.0011 35 1 8.2887 5.4644 0.8907 36 1 8.2894 5.4647 -0.8892 37 1 10.3317 3.7865 -0.6668 38 1 10.4480 6.6752 -0.6393 39 1 11.9325 5.6390 -0.5013 40 1 11.0975 5.2478 4.9721 41 1 11.6159 3.9469 1.4193 42 1 9.9840 4.1951 2.1754 43 1 3.7792 3.3099 0.0092 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032195657.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:27 Heat of formation + Delta-G solvation = -11.778196 kcal Electronic energy + Delta-G solvation = -25234.186472 eV Core-core repulsion = 21473.215668 eV Total energy + Delta-G solvation = -3760.970804 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.59785 -40.82264 -39.93498 -38.84135 -35.84635 -35.82031 -34.26391 -32.74327 -32.13306 -30.35974 -28.23753 -27.55767 -26.34205 -25.14804 -24.45203 -23.60339 -22.28346 -21.32587 -20.58626 -19.46000 -18.68762 -17.73295 -17.50539 -17.19453 -17.00760 -16.80916 -16.48341 -16.30671 -15.89385 -15.71128 -15.39123 -15.13390 -14.79528 -14.68333 -14.38830 -14.24581 -14.02997 -13.43311 -13.35189 -13.20657 -13.03869 -12.90170 -12.78384 -12.59812 -12.45654 -12.30444 -11.83702 -11.62347 -11.30255 -11.15678 -11.00144 -10.84420 -10.40197 -10.26240 -10.02292 -9.95073 -8.91271 -7.94764 -5.24052 -0.40978 -0.03650 1.41712 1.44078 1.50920 1.52674 1.95799 2.01899 2.21734 2.45723 2.83681 3.29416 3.47980 3.56841 3.59876 3.68797 3.81742 3.94252 4.02727 4.09906 4.33297 4.41888 4.51795 4.59388 4.60758 4.63668 4.79169 4.87866 4.90043 4.94998 4.97752 5.06611 5.15625 5.20262 5.23852 5.25094 5.32241 5.34177 5.51087 5.61531 5.72822 5.93142 6.44998 6.50214 6.91059 7.12373 7.15512 7.59302 8.60884 9.24310 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.019035 B = 0.002453 C = 0.002345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.609653 B =11412.928871 C =11935.381130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.711 5.711 3 C 0.551 3.449 4 O -0.587 6.587 5 C -0.158 4.158 6 C -0.043 4.043 7 C -0.117 4.117 8 C -0.051 4.051 9 C -0.154 4.154 10 C 0.547 3.453 11 O -0.590 6.590 12 N -0.701 5.701 13 C 0.159 3.841 14 C -0.122 4.122 15 C 0.123 3.877 16 N -0.645 5.645 17 C -0.226 4.226 18 H 0.081 0.919 19 C -0.068 4.068 20 N -0.951 5.951 21 Si 0.973 3.027 22 H -0.283 1.283 23 H -0.272 1.272 24 H -0.295 1.295 25 C 0.163 3.837 26 C -0.030 4.030 27 H 0.120 0.880 28 H 0.048 0.952 29 H 0.050 0.950 30 H 0.421 0.579 31 H 0.178 0.822 32 H 0.185 0.815 33 H 0.161 0.839 34 H 0.416 0.584 35 H 0.032 0.968 36 H 0.070 0.930 37 H 0.127 0.873 38 H 0.049 0.951 39 H 0.058 0.942 40 H 0.248 0.752 41 H 0.028 0.972 42 H 0.027 0.973 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.707 -23.419 -12.588 29.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.364 5.364 3 C 0.339 3.661 4 O -0.469 6.469 5 C -0.162 4.162 6 C -0.062 4.062 7 C -0.134 4.134 8 C -0.070 4.070 9 C -0.157 4.157 10 C 0.336 3.664 11 O -0.472 6.472 12 N -0.353 5.353 13 C 0.036 3.964 14 C -0.142 4.142 15 C -0.003 4.003 16 N -0.372 5.372 17 C -0.354 4.354 18 H 0.099 0.901 19 C -0.261 4.261 20 N -0.600 5.600 21 Si 0.801 3.199 22 H -0.209 1.209 23 H -0.196 1.196 24 H -0.222 1.222 25 C 0.037 3.963 26 C -0.050 4.050 27 H 0.139 0.861 28 H 0.066 0.934 29 H 0.069 0.931 30 H 0.260 0.740 31 H 0.195 0.805 32 H 0.203 0.797 33 H 0.179 0.821 34 H 0.255 0.745 35 H 0.050 0.950 36 H 0.088 0.912 37 H 0.145 0.855 38 H 0.068 0.932 39 H 0.076 0.924 40 H 0.057 0.943 41 H 0.046 0.954 42 H 0.046 0.954 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -14.546 -21.780 -12.286 28.929 hybrid contribution 0.508 0.847 1.199 1.553 sum -14.037 -20.933 -11.087 27.535 Atomic orbital electron populations 1.21750 0.78131 1.04784 1.01496 1.45561 1.08603 1.08013 1.74207 1.18557 0.87674 0.84146 0.75683 1.90791 1.70877 1.33372 1.51823 1.19834 0.92494 0.94712 1.09116 1.21954 0.95266 0.96764 0.92179 1.21608 0.93682 0.99206 0.98924 1.21958 1.01883 0.90730 0.92408 1.19769 0.93447 0.93418 1.09082 1.18760 0.82634 0.89232 0.75784 1.90770 1.69789 1.34457 1.52159 1.45716 1.05303 1.10523 1.73711 1.20753 0.89858 0.85172 1.00667 1.23039 0.92369 1.00020 0.98734 1.22593 0.97204 0.95377 0.85086 1.46104 1.84481 1.04156 1.02421 1.19300 1.42244 0.87166 0.86739 0.90124 1.25590 1.03095 0.98766 0.98647 1.69989 1.58043 1.18140 1.13856 0.85143 0.77476 0.78714 0.78554 1.20944 1.19646 1.22212 1.22086 0.95940 0.84956 0.93294 1.21199 0.93136 0.98356 0.92333 0.86113 0.93351 0.93130 0.74028 0.80514 0.79730 0.82130 0.74485 0.94954 0.91205 0.85542 0.93228 0.92419 0.94350 0.95408 0.95447 0.87503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.81 10.70 127.77 1.37 2.18 16 2 N -0.71 -8.37 5.66 -487.45 -2.76 -11.13 16 3 C 0.55 12.47 7.77 86.79 0.67 13.15 16 4 O -0.59 -19.79 16.34 -3.88 -0.06 -19.86 16 5 C -0.16 -3.21 5.87 -20.12 -0.12 -3.33 16 6 C -0.04 -0.41 9.54 22.58 0.22 -0.19 16 7 C -0.12 -0.96 10.02 22.19 0.22 -0.73 16 8 C -0.05 -0.75 9.54 22.58 0.22 -0.54 16 9 C -0.15 -3.94 5.87 -20.12 -0.12 -4.06 16 10 C 0.55 18.42 7.77 86.79 0.67 19.09 16 11 O -0.59 -26.17 16.34 -3.86 -0.06 -26.24 16 12 N -0.70 -20.16 5.51 -465.96 -2.57 -22.73 16 13 C 0.16 5.62 5.52 86.38 0.48 6.09 16 14 C -0.12 -3.99 4.17 -10.37 -0.04 -4.03 16 15 C 0.12 4.69 8.25 83.18 0.69 5.37 16 16 N -0.64 -33.05 3.60 -737.95 -2.66 -35.71 16 17 C -0.23 -13.04 10.73 84.04 0.90 -12.14 16 18 H 0.08 4.49 7.84 -2.91 -0.02 4.47 16 19 C -0.07 -3.99 5.50 84.86 0.47 -3.52 16 20 N -0.95 -58.50 11.81 21.65 0.26 -58.25 16 21 Si 0.97 47.59 29.56 68.60 2.03 49.61 16 22 H -0.28 -13.39 7.11 99.48 0.71 -12.69 16 23 H -0.27 -12.77 7.11 99.48 0.71 -12.07 16 24 H -0.30 -14.59 7.11 99.48 0.71 -13.88 16 25 C 0.16 7.32 6.75 83.27 0.56 7.88 16 26 C -0.03 -0.85 9.14 22.79 0.21 -0.64 16 27 H 0.12 0.15 8.14 -2.39 -0.02 0.13 16 28 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.05 0.64 8.14 -2.38 -0.02 0.62 16 30 H 0.42 1.20 6.85 -92.71 -0.64 0.57 16 31 H 0.18 -0.08 6.39 -2.91 -0.02 -0.10 16 32 H 0.19 -0.07 8.06 -2.91 -0.02 -0.09 16 33 H 0.16 1.45 6.39 -2.91 -0.02 1.43 16 34 H 0.42 8.38 6.50 -92.71 -0.60 7.78 16 35 H 0.03 1.49 7.93 -2.39 -0.02 1.47 16 36 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 37 H 0.13 2.88 8.14 -2.39 -0.02 2.87 16 38 H 0.05 1.82 8.12 -2.39 -0.02 1.80 16 39 H 0.06 2.01 8.14 -2.38 -0.02 1.99 16 40 H 0.25 14.82 8.31 -92.71 -0.77 14.04 16 41 H 0.03 1.26 8.14 -2.38 -0.02 1.24 16 42 H 0.03 1.40 7.56 -2.39 -0.02 1.38 16 43 H 0.11 3.87 7.23 -2.91 -0.02 3.85 16 Total: -1.00 -92.28 365.44 0.38 -91.90 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -0.18 Total: 7.81 kcal Atomic # 6 Polarization: 18.19 SS G_CDS: 6.39 Total: 24.58 kcal Atomic # 7 Polarization: -120.09 SS G_CDS: -7.73 Total: -127.82 kcal Atomic # 8 Polarization: -45.96 SS G_CDS: -0.13 Total: -46.09 kcal Atomic # 14 Polarization: 47.59 SS G_CDS: 2.03 Total: 49.61 kcal Total: -92.28 0.38 -91.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032195657.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.124 kcal (2) G-P(sol) polarization free energy of solvation -92.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds