Wall clock time and date at job start Tue Mar 31 2020 11:41:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35910 * 117.00335 * 2 1 4 4 C 1.39144 * 120.46765 * 359.97438 * 3 2 1 5 5 C 1.38542 * 118.36961 * 179.97438 * 4 3 2 6 6 C 1.38251 * 119.22135 * 0.02562 * 5 4 3 7 7 N 1.31854 * 120.88869 * 359.97438 * 6 5 4 8 8 C 1.31841 * 121.77739 * 0.02562 * 7 6 5 9 9 C 1.50696 * 119.65311 * 179.97438 * 8 7 6 10 10 C 1.50703 * 109.47400 * 90.00285 * 9 8 7 11 11 O 1.21282 * 119.99403 * 359.97438 * 10 9 8 12 12 N 1.34774 * 120.00042 * 179.97438 * 10 9 8 13 13 C 1.47864 * 126.94944 * 359.68606 * 12 10 9 14 14 C 1.55994 * 105.11527 * 181.87311 * 13 12 10 15 15 H 1.09005 * 116.16229 * 159.05050 * 14 13 12 16 16 C 1.57081 * 99.47875 * 33.16385 * 14 13 12 17 17 C 1.49296 * 126.93843 * 179.97438 * 12 10 9 18 18 H 1.08994 * 116.15771 * 16.70693 * 17 12 10 19 19 C 1.56026 * 104.09086 * 246.69761 * 17 12 10 20 20 N 1.47871 * 105.10470 * 288.77429 * 19 17 12 21 21 C 1.36932 * 126.94321 * 182.02385 * 20 19 17 22 22 H 1.07999 * 119.99854 * 179.97438 * 21 20 19 23 23 C 1.38813 * 120.00030 * 359.97433 * 21 20 19 24 24 N 1.31621 * 120.00060 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 119.99894 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47264 * 359.97438 * 25 23 21 27 27 H 1.48503 * 109.46952 * 119.99809 * 25 23 21 28 28 H 1.48506 * 109.46881 * 239.99382 * 25 23 21 29 29 H 1.09004 * 109.47166 * 300.00376 * 1 2 3 30 30 H 1.09001 * 109.46966 * 60.00172 * 1 2 3 31 31 H 1.09000 * 109.47147 * 180.02562 * 1 2 3 32 32 H 1.07999 * 120.81793 * 0.02562 * 4 3 2 33 33 H 1.07993 * 120.38668 * 179.97438 * 5 4 3 34 34 H 1.07996 * 119.55899 * 180.02562 * 6 5 4 35 35 H 1.09010 * 109.47144 * 209.99858 * 9 8 7 36 36 H 1.08992 * 109.47532 * 329.99867 * 9 8 7 37 37 H 1.08994 * 110.31553 * 300.90946 * 13 12 10 38 38 H 1.09000 * 110.31375 * 63.09088 * 13 12 10 39 39 H 1.08994 * 112.37063 * 191.51153 * 16 14 13 40 40 H 1.08998 * 112.36574 * 64.06905 * 16 14 13 41 41 H 1.08999 * 110.31353 * 47.67546 * 19 17 12 42 42 H 1.08991 * 110.31342 * 169.86333 * 19 17 12 43 43 H 0.96998 * 119.99921 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 1.2979 2.3841 -0.0005 5 6 1.9717 3.5946 0.0000 6 6 3.3542 3.5975 0.0006 7 7 4.0334 2.4674 0.0010 8 6 3.4305 1.2949 0.0005 9 6 4.2542 0.0330 0.0005 10 6 4.5282 -0.3881 1.4213 11 8 4.0974 0.2719 2.3431 12 7 5.2519 -1.4981 1.6676 13 6 5.8420 -2.4142 0.6682 14 6 6.5227 -3.5428 1.5028 15 1 6.7051 -4.4826 0.9815 16 6 5.5319 -3.5973 2.7205 17 6 5.6147 -2.0543 3.0047 18 1 5.0376 -1.6839 3.8519 19 6 7.1641 -1.8859 3.0785 20 7 7.7055 -2.8788 2.1257 21 6 9.0252 -3.1371 1.8675 22 1 9.2961 -3.8924 1.1446 23 6 10.0147 -2.4284 2.5349 24 7 9.6844 -1.5076 3.4155 25 14 11.8150 -2.7804 2.1821 26 1 11.9187 -3.8519 1.1591 27 1 12.4706 -1.5476 1.6765 28 1 12.4869 -3.2219 3.4307 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 0.2183 2.3518 -0.0005 33 1 1.4234 4.5250 -0.0008 34 1 3.8850 4.5380 0.0014 35 1 3.7076 -0.7577 -0.5137 36 1 5.1982 0.2152 -0.5129 37 1 5.0628 -2.8306 0.0299 38 1 6.5851 -1.8904 0.0669 39 1 5.9217 -4.1926 3.5461 40 1 4.5305 -3.9120 2.4267 41 1 7.4499 -0.8779 2.7777 42 1 7.5200 -2.0960 4.0870 43 1 10.3759 -1.0127 3.8822 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032588915.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:28 Heat of formation + Delta-G solvation = 29.774524 kcal Electronic energy + Delta-G solvation = -26903.316520 eV Core-core repulsion = 23144.147577 eV Total energy + Delta-G solvation = -3759.168943 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.87789 -39.86232 -38.25557 -37.64276 -33.56409 -33.11084 -31.67664 -31.25664 -29.22297 -28.53923 -27.92701 -27.48445 -25.13690 -23.60382 -22.96961 -22.51172 -20.43526 -19.77491 -18.43340 -18.15769 -17.24171 -17.16378 -16.43395 -16.17080 -15.87206 -15.50101 -14.97600 -14.53222 -14.41809 -14.06290 -13.92804 -13.49087 -13.40776 -13.20587 -12.93849 -12.36999 -12.11032 -11.91464 -11.71813 -11.63082 -11.61116 -11.49499 -11.25333 -10.95302 -10.81999 -10.72833 -10.54379 -10.18623 -10.01231 -9.86122 -9.60103 -9.57993 -9.32874 -8.67271 -8.38511 -7.90216 -6.88284 -5.72542 -3.07231 1.04148 1.21480 3.02146 3.19209 3.39533 3.40681 3.44893 3.48322 3.83670 4.29237 4.45432 4.51623 4.58139 4.81886 4.88897 4.95533 4.98709 5.14973 5.23384 5.24815 5.25023 5.36950 5.44933 5.54247 5.61443 5.69567 5.80589 5.83155 5.90073 5.97962 6.03736 6.25060 6.34425 6.36023 6.46759 6.56793 6.64988 6.76443 7.06595 7.47505 7.55806 7.77338 7.99718 8.13847 8.20513 8.71497 9.14260 9.75303 10.44667 11.39488 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.020396 B = 0.003411 C = 0.003123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.475501 B = 8206.978108 C = 8964.263656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.305 6.305 3 C 0.090 3.910 4 C -0.166 4.166 5 C -0.139 4.139 6 C 0.064 3.936 7 N -0.436 5.436 8 C 0.136 3.864 9 C -0.082 4.082 10 C 0.540 3.460 11 O -0.552 6.552 12 N -0.607 5.607 13 C 0.082 3.918 14 C 0.141 3.859 15 H 0.106 0.894 16 C -0.152 4.152 17 C 0.099 3.901 18 H 0.111 0.889 19 C 0.175 3.825 20 N -0.597 5.597 21 C -0.231 4.231 22 H 0.081 0.919 23 C -0.006 4.006 24 N -0.918 5.918 25 Si 0.912 3.088 26 H -0.279 1.279 27 H -0.291 1.291 28 H -0.291 1.291 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.102 0.898 32 H 0.138 0.862 33 H 0.136 0.864 34 H 0.158 0.842 35 H 0.108 0.892 36 H 0.110 0.890 37 H 0.054 0.946 38 H 0.071 0.929 39 H 0.083 0.917 40 H 0.065 0.935 41 H 0.048 0.952 42 H 0.055 0.945 43 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.350 3.388 -8.909 21.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.217 6.217 3 C 0.042 3.958 4 C -0.193 4.193 5 C -0.158 4.158 6 C -0.093 4.093 7 N -0.145 5.145 8 C -0.005 4.005 9 C -0.123 4.123 10 C 0.328 3.672 11 O -0.431 6.431 12 N -0.341 5.341 13 C -0.043 4.043 14 C 0.032 3.968 15 H 0.124 0.876 16 C -0.192 4.192 17 C -0.003 4.003 18 H 0.129 0.871 19 C 0.050 3.950 20 N -0.321 5.321 21 C -0.359 4.359 22 H 0.099 0.901 23 C -0.203 4.203 24 N -0.565 5.565 25 Si 0.743 3.257 26 H -0.205 1.205 27 H -0.218 1.218 28 H -0.218 1.218 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.120 0.880 32 H 0.155 0.845 33 H 0.154 0.846 34 H 0.175 0.825 35 H 0.126 0.874 36 H 0.128 0.872 37 H 0.073 0.927 38 H 0.090 0.910 39 H 0.101 0.899 40 H 0.083 0.917 41 H 0.066 0.934 42 H 0.073 0.927 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -18.367 3.743 -8.370 20.528 hybrid contribution -0.215 0.226 -0.161 0.351 sum -18.582 3.968 -8.530 20.828 Atomic orbital electron populations 1.23089 0.78410 1.04223 1.01170 1.86119 1.21304 1.25972 1.88326 1.19826 0.93050 0.85126 0.97756 1.21615 1.00516 0.92151 1.05005 1.21939 0.95757 0.98091 1.00054 1.22617 0.91390 0.96366 0.98911 1.67500 1.39989 0.97520 1.09523 1.20024 0.87706 0.93497 0.99268 1.20413 1.01442 0.93954 0.96460 1.19714 0.77664 0.79536 0.90276 1.90657 1.52759 1.53244 1.46433 1.49153 1.51307 1.24421 1.09184 1.23307 0.96348 0.92898 0.91779 1.23138 0.87449 0.93809 0.92384 0.87621 1.24176 0.98928 0.95697 1.00412 1.24322 0.98522 0.92157 0.85307 0.87072 1.21905 0.85027 0.93568 0.94490 1.45227 1.00230 1.41182 1.45468 1.19087 0.80028 1.17194 1.19591 0.90097 1.24827 0.98069 0.98490 0.98912 1.69935 1.31417 1.26098 1.29023 0.86050 0.84943 0.77376 0.77370 1.20468 1.21779 1.21794 0.92612 0.92731 0.87967 0.84469 0.84648 0.82485 0.87405 0.87171 0.92746 0.91025 0.89879 0.91689 0.93406 0.92721 0.93649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.83 101.05 0.99 1.20 16 2 O -0.31 -3.86 9.55 -19.46 -0.19 -4.05 16 3 C 0.09 1.25 6.67 -39.07 -0.26 0.99 16 4 C -0.17 -1.85 9.14 -39.13 -0.36 -2.21 16 5 C -0.14 -1.46 10.11 -39.46 -0.40 -1.86 16 6 C 0.06 0.82 11.18 -17.54 -0.20 0.62 16 7 N -0.44 -7.17 10.27 -9.36 -0.10 -7.26 16 8 C 0.14 2.18 5.29 -82.42 -0.44 1.75 16 9 C -0.08 -1.31 5.06 -29.04 -0.15 -1.46 16 10 C 0.54 10.65 7.89 -10.99 -0.09 10.56 16 11 O -0.55 -12.72 16.38 5.56 0.09 -12.63 16 12 N -0.61 -11.73 2.95 -156.78 -0.46 -12.19 16 13 C 0.08 1.42 6.01 -1.69 -0.01 1.41 16 14 C 0.14 2.64 5.52 -62.58 -0.35 2.30 16 15 H 0.11 1.75 8.14 -51.93 -0.42 1.33 16 16 C -0.15 -2.64 6.81 -22.28 -0.15 -2.79 16 17 C 0.10 2.01 5.24 -62.53 -0.33 1.68 16 18 H 0.11 2.21 8.06 -51.93 -0.42 1.80 16 19 C 0.18 4.33 4.77 -1.67 -0.01 4.32 16 20 N -0.60 -14.56 3.03 -156.37 -0.47 -15.03 16 21 C -0.23 -6.20 10.37 -15.06 -0.16 -6.36 16 22 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 23 C -0.01 -0.17 5.49 -17.43 -0.10 -0.27 16 24 N -0.92 -27.21 10.56 55.49 0.59 -26.62 16 25 Si 0.91 21.94 29.55 -169.99 -5.02 16.92 16 26 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 27 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 28 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 29 H 0.06 0.40 7.70 -51.93 -0.40 0.00 16 30 H 0.05 0.32 7.70 -51.93 -0.40 -0.08 16 31 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.14 1.08 6.45 -52.49 -0.34 0.74 16 33 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 34 H 0.16 1.55 8.06 -52.49 -0.42 1.13 16 35 H 0.11 1.46 7.52 -51.92 -0.39 1.07 16 36 H 0.11 1.71 8.14 -51.93 -0.42 1.29 16 37 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 39 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 40 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.05 1.37 7.68 -51.93 -0.40 0.97 16 42 H 0.05 1.48 7.46 -51.93 -0.39 1.09 16 43 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 354.79 15.07 5.35 5.35 Total: -1.00 -35.24 354.79 -8.29 -43.53 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -6.08 Total: 2.10 kcal Atomic # 6 Polarization: 11.88 SS G_CDS: -1.98 Total: 9.89 kcal Atomic # 7 Polarization: -60.66 SS G_CDS: -0.45 Total: -61.11 kcal Atomic # 8 Polarization: -16.58 SS G_CDS: -0.09 Total: -16.68 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -35.24 -8.29 -43.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032588915.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.302 kcal (2) G-P(sol) polarization free energy of solvation -35.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.528 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds