Wall clock time and date at job start Tue Mar 31 2020 11:41:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35910 * 117.00335 * 2 1 4 4 C 1.39144 * 120.46765 * 359.97438 * 3 2 1 5 5 C 1.38542 * 118.36961 * 179.97438 * 4 3 2 6 6 C 1.38251 * 119.22135 * 0.02562 * 5 4 3 7 7 N 1.31854 * 120.88869 * 359.97438 * 6 5 4 8 8 C 1.31841 * 121.77739 * 0.02562 * 7 6 5 9 9 C 1.50696 * 119.65311 * 179.97438 * 8 7 6 10 10 C 1.50703 * 109.47400 * 90.00285 * 9 8 7 11 11 O 1.21282 * 119.99403 * 359.97438 * 10 9 8 12 12 N 1.34774 * 120.00042 * 179.97438 * 10 9 8 13 13 C 1.47864 * 126.94944 * 359.68606 * 12 10 9 14 14 C 1.55994 * 105.11527 * 181.87311 * 13 12 10 15 15 H 1.09005 * 116.16229 * 159.05050 * 14 13 12 16 16 C 1.57081 * 99.47875 * 33.16385 * 14 13 12 17 17 C 1.49296 * 126.93843 * 179.97438 * 12 10 9 18 18 H 1.08994 * 116.15771 * 16.70693 * 17 12 10 19 19 C 1.56026 * 104.09086 * 246.69761 * 17 12 10 20 20 N 1.47871 * 105.10470 * 288.77429 * 19 17 12 21 21 C 1.36932 * 126.94321 * 182.02385 * 20 19 17 22 22 H 1.07999 * 119.99854 * 179.97438 * 21 20 19 23 23 C 1.38813 * 120.00030 * 359.97433 * 21 20 19 24 24 N 1.31621 * 120.00060 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 119.99894 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47264 * 359.97438 * 25 23 21 27 27 H 1.48503 * 109.46952 * 119.99809 * 25 23 21 28 28 H 1.48506 * 109.46881 * 239.99382 * 25 23 21 29 29 H 1.09004 * 109.47166 * 300.00376 * 1 2 3 30 30 H 1.09001 * 109.46966 * 60.00172 * 1 2 3 31 31 H 1.09000 * 109.47147 * 180.02562 * 1 2 3 32 32 H 1.07999 * 120.81793 * 0.02562 * 4 3 2 33 33 H 1.07993 * 120.38668 * 179.97438 * 5 4 3 34 34 H 1.07996 * 119.55899 * 180.02562 * 6 5 4 35 35 H 1.09010 * 109.47144 * 209.99858 * 9 8 7 36 36 H 1.08992 * 109.47532 * 329.99867 * 9 8 7 37 37 H 1.08994 * 110.31553 * 300.90946 * 13 12 10 38 38 H 1.09000 * 110.31375 * 63.09088 * 13 12 10 39 39 H 1.08994 * 112.37063 * 191.51153 * 16 14 13 40 40 H 1.08998 * 112.36574 * 64.06905 * 16 14 13 41 41 H 1.08999 * 110.31353 * 47.67546 * 19 17 12 42 42 H 1.08991 * 110.31342 * 169.86333 * 19 17 12 43 43 H 0.96998 * 119.99921 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 1.2979 2.3841 -0.0005 5 6 1.9717 3.5946 0.0000 6 6 3.3542 3.5975 0.0006 7 7 4.0334 2.4674 0.0010 8 6 3.4305 1.2949 0.0005 9 6 4.2542 0.0330 0.0005 10 6 4.5282 -0.3881 1.4213 11 8 4.0974 0.2719 2.3431 12 7 5.2519 -1.4981 1.6676 13 6 5.8420 -2.4142 0.6682 14 6 6.5227 -3.5428 1.5028 15 1 6.7051 -4.4826 0.9815 16 6 5.5319 -3.5973 2.7205 17 6 5.6147 -2.0543 3.0047 18 1 5.0376 -1.6839 3.8519 19 6 7.1641 -1.8859 3.0785 20 7 7.7055 -2.8788 2.1257 21 6 9.0252 -3.1371 1.8675 22 1 9.2961 -3.8924 1.1446 23 6 10.0147 -2.4284 2.5349 24 7 9.6844 -1.5076 3.4155 25 14 11.8150 -2.7804 2.1821 26 1 11.9187 -3.8519 1.1591 27 1 12.4706 -1.5476 1.6765 28 1 12.4869 -3.2219 3.4307 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 0.2183 2.3518 -0.0005 33 1 1.4234 4.5250 -0.0008 34 1 3.8850 4.5380 0.0014 35 1 3.7076 -0.7577 -0.5137 36 1 5.1982 0.2152 -0.5129 37 1 5.0628 -2.8306 0.0299 38 1 6.5851 -1.8904 0.0669 39 1 5.9217 -4.1926 3.5461 40 1 4.5305 -3.9120 2.4267 41 1 7.4499 -0.8779 2.7777 42 1 7.5200 -2.0960 4.0870 43 1 10.3759 -1.0127 3.8822 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032588915.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:27 Heat of formation + Delta-G solvation = 5.335282 kcal Electronic energy + Delta-G solvation = -26904.376285 eV Core-core repulsion = 23144.147577 eV Total energy + Delta-G solvation = -3760.228708 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.92338 -41.34771 -39.35216 -39.00474 -35.44701 -34.22288 -33.25874 -32.39464 -30.86687 -30.24474 -29.02004 -28.27013 -26.96476 -25.26829 -23.85256 -23.72608 -21.98266 -21.40574 -20.03640 -19.06640 -18.83370 -18.17921 -17.98960 -17.50021 -16.97725 -16.78131 -16.40156 -16.16752 -15.67611 -15.33145 -15.03199 -14.91396 -14.69208 -14.40119 -14.13436 -13.78675 -13.55198 -13.35119 -13.19719 -13.09153 -12.97499 -12.79339 -12.73311 -12.34393 -12.32886 -12.26103 -12.12659 -11.98384 -11.85913 -11.52302 -11.05888 -10.77222 -10.60686 -10.55012 -9.51776 -9.33811 -8.90315 -7.83351 -5.19558 0.09523 0.30430 1.47175 1.48242 1.58470 1.66101 2.00214 2.25327 2.49452 2.79578 3.29745 3.34384 3.39616 3.62174 3.67157 3.82113 3.88482 3.92208 4.04815 4.07896 4.22496 4.24270 4.36028 4.39331 4.44647 4.46584 4.63336 4.65440 4.72666 4.78319 4.87916 4.95536 5.03571 5.03712 5.10400 5.16003 5.26871 5.46437 5.50217 5.55214 5.65862 6.10607 6.24613 6.67973 7.03030 7.03416 7.18254 7.72006 8.42788 9.28119 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.020396 B = 0.003411 C = 0.003123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.475501 B = 8206.978108 C = 8964.263656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.325 6.325 3 C 0.083 3.917 4 C -0.165 4.165 5 C -0.124 4.124 6 C 0.043 3.957 7 N -0.480 5.480 8 C 0.093 3.907 9 C -0.070 4.070 10 C 0.534 3.466 11 O -0.593 6.593 12 N -0.610 5.610 13 C 0.088 3.912 14 C 0.136 3.864 15 H 0.140 0.860 16 C -0.128 4.128 17 C 0.100 3.900 18 H 0.109 0.891 19 C 0.189 3.811 20 N -0.617 5.617 21 C -0.228 4.228 22 H 0.099 0.901 23 C -0.074 4.074 24 N -0.959 5.959 25 Si 0.978 3.022 26 H -0.256 1.256 27 H -0.301 1.301 28 H -0.297 1.297 29 H 0.060 0.940 30 H 0.076 0.924 31 H 0.120 0.880 32 H 0.174 0.826 33 H 0.178 0.822 34 H 0.177 0.823 35 H 0.134 0.866 36 H 0.105 0.895 37 H 0.106 0.894 38 H 0.052 0.948 39 H 0.081 0.919 40 H 0.104 0.896 41 H -0.008 1.008 42 H 0.017 0.983 43 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.227 2.103 -11.118 24.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.237 6.237 3 C 0.035 3.965 4 C -0.191 4.191 5 C -0.143 4.143 6 C -0.114 4.114 7 N -0.189 5.189 8 C -0.046 4.046 9 C -0.110 4.110 10 C 0.324 3.676 11 O -0.474 6.474 12 N -0.343 5.343 13 C -0.036 4.036 14 C 0.030 3.970 15 H 0.157 0.843 16 C -0.167 4.167 17 C -0.004 4.004 18 H 0.127 0.873 19 C 0.063 3.937 20 N -0.341 5.341 21 C -0.356 4.356 22 H 0.116 0.884 23 C -0.267 4.267 24 N -0.609 5.609 25 Si 0.807 3.193 26 H -0.180 1.180 27 H -0.229 1.229 28 H -0.224 1.224 29 H 0.079 0.921 30 H 0.094 0.906 31 H 0.138 0.862 32 H 0.191 0.809 33 H 0.195 0.805 34 H 0.194 0.806 35 H 0.151 0.849 36 H 0.123 0.877 37 H 0.124 0.876 38 H 0.071 0.929 39 H 0.099 0.901 40 H 0.123 0.877 41 H 0.010 0.990 42 H 0.035 0.965 43 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -21.277 2.390 -10.636 23.907 hybrid contribution 0.557 0.675 0.510 1.013 sum -20.721 3.065 -10.126 23.265 Atomic orbital electron populations 1.23427 0.76006 1.05962 1.02435 1.86075 1.23805 1.25654 1.88177 1.19898 0.92612 0.86538 0.97460 1.22087 1.02254 0.91292 1.03515 1.22394 0.94924 0.99738 0.97273 1.23126 0.93000 0.96151 0.99112 1.67399 1.41868 0.98724 1.10955 1.20046 0.89055 0.93242 1.02221 1.20338 1.01767 0.95323 0.93572 1.20450 0.76861 0.78758 0.91579 1.90617 1.54478 1.54296 1.48040 1.49261 1.51094 1.24873 1.09083 1.23278 0.97322 0.91711 0.91276 1.23590 0.85280 0.95020 0.93128 0.84260 1.24069 1.00535 0.92597 0.99474 1.24142 0.94760 0.95102 0.86354 0.87347 1.21470 0.88526 0.91055 0.92626 1.45494 1.01229 1.41540 1.45837 1.19609 0.81329 1.16232 1.18467 0.88371 1.25703 1.02366 0.99039 0.99563 1.70190 1.31935 1.27862 1.30880 0.85003 0.79870 0.77170 0.77260 1.17950 1.22891 1.22415 0.92103 0.90574 0.86169 0.80894 0.80493 0.80573 0.84855 0.87687 0.87631 0.92945 0.90090 0.87727 0.98976 0.96507 0.94832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.83 113.37 1.11 1.31 16 2 O -0.32 -7.54 9.55 -92.53 -0.88 -8.42 16 3 C 0.08 2.19 6.67 22.60 0.15 2.34 16 4 C -0.17 -3.21 9.14 22.56 0.21 -3.00 16 5 C -0.12 -2.28 10.11 22.35 0.23 -2.05 16 6 C 0.04 1.08 11.18 84.69 0.95 2.02 16 7 N -0.48 -16.10 10.27 -183.51 -1.88 -17.99 16 8 C 0.09 3.02 5.29 42.67 0.23 3.25 16 9 C -0.07 -2.24 5.06 29.10 0.15 -2.09 16 10 C 0.53 21.35 7.89 87.66 0.69 22.04 16 11 O -0.59 -28.24 16.38 -3.03 -0.05 -28.29 16 12 N -0.61 -23.45 2.95 -768.31 -2.26 -25.71 16 13 C 0.09 2.87 6.01 87.15 0.52 3.40 16 14 C 0.14 4.76 5.52 46.93 0.26 5.02 16 15 H 0.14 3.98 8.14 -2.38 -0.02 3.96 16 16 C -0.13 -4.11 6.81 33.47 0.23 -3.88 16 17 C 0.10 4.08 5.24 46.94 0.25 4.33 16 18 H 0.11 4.47 8.06 -2.39 -0.02 4.45 16 19 C 0.19 9.89 4.77 87.17 0.42 10.31 16 20 N -0.62 -30.36 3.03 -648.64 -1.96 -32.32 16 21 C -0.23 -12.27 10.37 84.03 0.87 -11.40 16 22 H 0.10 4.85 7.83 -2.91 -0.02 4.82 16 23 C -0.07 -4.27 5.49 84.86 0.47 -3.81 16 24 N -0.96 -60.25 10.56 21.65 0.23 -60.02 16 25 Si 0.98 46.19 29.55 68.60 2.03 48.21 16 26 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 27 H -0.30 -14.59 7.11 99.48 0.71 -13.88 16 28 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 29 H 0.06 0.69 7.70 -2.38 -0.02 0.67 16 30 H 0.08 0.61 7.70 -2.39 -0.02 0.59 16 31 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.17 1.97 6.45 -2.91 -0.02 1.95 16 33 H 0.18 1.68 8.06 -2.91 -0.02 1.66 16 34 H 0.18 3.36 8.06 -2.91 -0.02 3.34 16 35 H 0.13 3.40 7.52 -2.38 -0.02 3.38 16 36 H 0.10 3.37 8.14 -2.39 -0.02 3.35 16 37 H 0.11 2.45 8.14 -2.39 -0.02 2.43 16 38 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 39 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 40 H 0.10 2.64 8.14 -2.39 -0.02 2.62 16 41 H -0.01 -0.50 7.68 -2.39 -0.02 -0.52 16 42 H 0.02 0.98 7.46 -2.39 -0.02 0.97 16 43 H 0.24 15.00 8.31 -92.71 -0.77 14.23 16 Total: -1.00 -83.76 354.79 2.94 -80.82 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: 1.02 Total: 15.94 kcal Atomic # 6 Polarization: 21.07 SS G_CDS: 6.72 Total: 27.79 kcal Atomic # 7 Polarization: -130.16 SS G_CDS: -5.88 Total: -136.04 kcal Atomic # 8 Polarization: -35.78 SS G_CDS: -0.93 Total: -36.71 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 2.03 Total: 48.21 kcal Total: -83.76 2.94 -80.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032588915.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.153 kcal (2) G-P(sol) polarization free energy of solvation -83.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.818 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds