Wall clock time and date at job start Tue Mar 31 2020 11:41:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35903 * 116.99916 * 2 1 4 4 C 1.39137 * 120.47491 * 179.97438 * 3 2 1 5 5 C 1.38542 * 118.37461 * 179.75870 * 4 3 2 6 6 C 1.38255 * 119.22188 * 0.52853 * 5 4 3 7 7 C 1.50693 * 119.55490 * 179.73390 * 6 5 4 8 8 C 1.50706 * 109.47172 * 124.72941 * 7 6 5 9 9 O 1.21282 * 119.99536 * 359.97438 * 8 7 6 10 10 N 1.34765 * 120.00292 * 179.97438 * 8 7 6 11 11 C 1.47870 * 126.94601 * 0.02791 * 10 8 7 12 12 C 1.56020 * 105.10881 * 181.97955 * 11 10 8 13 13 H 1.08998 * 116.25146 * 159.68230 * 12 11 10 14 14 C 1.57083 * 99.60533 * 32.80071 * 12 11 10 15 15 C 1.49291 * 126.94717 * 179.97438 * 10 8 7 16 16 H 1.08998 * 116.15432 * 15.86487 * 15 10 8 17 17 C 1.56019 * 104.09450 * 246.72193 * 15 10 8 18 18 N 1.47869 * 105.10550 * 288.76651 * 17 15 10 19 19 C 1.36935 * 126.94823 * 181.96668 * 18 17 15 20 20 H 1.07994 * 120.00433 * 180.02562 * 19 18 17 21 21 C 1.38811 * 119.99778 * 0.04395 * 19 18 17 22 22 N 1.31620 * 120.00231 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00057 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47142 * 59.99679 * 23 21 19 25 25 H 1.48505 * 109.47490 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.47293 * 299.99779 * 23 21 19 27 27 N 1.31850 * 120.88162 * 359.45515 * 6 5 4 28 28 C 1.31840 * 121.78282 * 0.28245 * 27 6 5 29 29 H 1.09006 * 109.47219 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47096 * 299.99772 * 1 2 3 31 31 H 1.09005 * 109.46962 * 60.00066 * 1 2 3 32 32 H 1.08001 * 120.81089 * 0.02562 * 4 3 2 33 33 H 1.07995 * 120.38516 * 180.26028 * 5 4 3 34 34 H 1.08994 * 109.47375 * 4.72872 * 7 6 5 35 35 H 1.08995 * 109.47135 * 244.72500 * 7 6 5 36 36 H 1.08999 * 110.31475 * 63.06655 * 11 10 8 37 37 H 1.09000 * 110.31654 * 300.88552 * 11 10 8 38 38 H 1.09004 * 112.36612 * 64.27901 * 14 12 11 39 39 H 1.08995 * 112.36754 * 191.71688 * 14 12 11 40 40 H 1.08999 * 110.31358 * 169.85773 * 17 15 10 41 41 H 1.09001 * 110.31506 * 47.67151 * 17 15 10 42 42 H 0.96997 * 120.00180 * 180.02562 * 22 21 19 43 43 H 1.08004 * 119.65343 * 179.97438 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4348 1.2953 0.0005 5 6 4.0181 2.5519 -0.0046 6 6 3.2079 3.6721 0.0010 7 6 3.8344 5.0427 0.0016 8 6 3.3025 5.8387 -1.1623 9 8 2.4945 5.3417 -1.9181 10 7 3.7245 7.1026 -1.3633 11 6 4.6987 7.8553 -0.5441 12 6 4.7719 9.2703 -1.1972 13 1 5.1569 10.0725 -0.5676 14 6 3.2904 9.4027 -1.7026 15 6 3.3039 8.0256 -2.4588 16 1 2.4009 7.7468 -3.0018 17 6 4.5945 8.2115 -3.3155 18 7 5.4934 9.0399 -2.4835 19 6 6.7368 9.5016 -2.8237 20 1 7.3000 10.1018 -2.1245 21 6 7.2732 9.1986 -4.0676 22 7 6.5870 8.4671 -4.9198 23 14 8.9697 9.8279 -4.5316 24 1 9.9725 9.3023 -3.5708 25 1 9.3102 9.3690 -5.9023 26 1 8.9754 11.3123 -4.4905 27 7 1.8944 3.5573 0.0005 28 6 1.3002 2.3804 0.0001 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 4.0432 0.4029 0.0005 33 1 5.0931 2.6551 -0.0086 34 1 4.9165 4.9475 -0.0876 35 1 3.5901 5.5535 0.9329 36 1 5.6750 7.3718 -0.5779 37 1 4.3487 7.9313 0.4854 38 1 2.5724 9.4190 -0.8826 39 1 3.1570 10.2464 -2.3796 40 1 4.3594 8.7265 -4.2469 41 1 5.0540 7.2449 -3.5221 42 1 6.9620 8.2551 -5.7889 43 1 0.2215 2.3264 0.0000 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032589152.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:31 Heat of formation + Delta-G solvation = 30.562808 kcal Electronic energy + Delta-G solvation = -26350.162401 eV Core-core repulsion = 22591.027641 eV Total energy + Delta-G solvation = -3759.134761 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.81376 -39.93537 -38.53405 -37.43622 -33.58489 -32.48528 -32.44633 -31.35748 -29.18842 -28.54774 -28.09824 -27.10042 -25.16324 -23.72360 -23.31080 -22.31131 -20.44341 -19.79673 -18.43766 -18.27189 -17.36296 -16.96318 -16.32361 -16.09260 -15.95881 -15.52487 -15.01840 -14.58178 -14.32684 -14.27360 -13.99533 -13.49676 -13.30521 -13.08436 -12.98039 -12.26493 -12.15873 -12.04388 -12.01796 -11.85165 -11.62670 -11.47100 -11.27541 -10.97559 -10.83595 -10.75453 -10.57188 -10.23995 -10.07753 -9.79241 -9.62335 -9.47259 -9.26613 -8.69908 -8.42183 -7.91298 -6.91734 -5.75893 -3.10656 1.03900 1.23602 2.95810 3.18106 3.37290 3.40159 3.41691 3.43872 3.80727 4.27450 4.42383 4.53111 4.61435 4.75273 4.86199 4.89918 5.01133 5.15810 5.21736 5.22548 5.28513 5.38639 5.41739 5.50414 5.57907 5.60758 5.66310 5.81792 5.83852 5.96381 6.02187 6.21123 6.33609 6.39250 6.45064 6.54396 6.62805 6.74498 7.01488 7.43748 7.51963 7.73106 7.99870 8.10711 8.19530 8.72740 9.10878 9.71846 10.41434 11.35927 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.022144 B = 0.002881 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.150733 B = 9717.036212 C =10246.687066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.315 6.315 3 C 0.067 3.933 4 C -0.109 4.109 5 C -0.125 4.125 6 C 0.114 3.886 7 C -0.083 4.083 8 C 0.534 3.466 9 O -0.540 6.540 10 N -0.610 5.610 11 C 0.083 3.917 12 C 0.140 3.860 13 H 0.106 0.894 14 C -0.150 4.150 15 C 0.100 3.900 16 H 0.112 0.888 17 C 0.174 3.826 18 N -0.598 5.598 19 C -0.232 4.232 20 H 0.080 0.920 21 C -0.006 4.006 22 N -0.919 5.919 23 Si 0.913 3.087 24 H -0.285 1.285 25 H -0.291 1.291 26 H -0.285 1.285 27 N -0.420 5.420 28 C 0.025 3.975 29 H 0.101 0.899 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.142 0.858 33 H 0.143 0.857 34 H 0.106 0.894 35 H 0.106 0.894 36 H 0.070 0.930 37 H 0.053 0.947 38 H 0.065 0.935 39 H 0.083 0.917 40 H 0.054 0.946 41 H 0.046 0.954 42 H 0.254 0.746 43 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.099 -11.205 13.277 19.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.227 6.227 3 C 0.020 3.980 4 C -0.135 4.135 5 C -0.145 4.145 6 C -0.025 4.025 7 C -0.124 4.124 8 C 0.322 3.678 9 O -0.417 6.417 10 N -0.344 5.344 11 C -0.043 4.043 12 C 0.032 3.968 13 H 0.124 0.876 14 C -0.190 4.190 15 C -0.003 4.003 16 H 0.130 0.870 17 C 0.049 3.951 18 N -0.322 5.322 19 C -0.360 4.360 20 H 0.098 0.902 21 C -0.203 4.203 22 N -0.566 5.566 23 Si 0.743 3.257 24 H -0.212 1.212 25 H -0.217 1.217 26 H -0.211 1.211 27 N -0.128 5.128 28 C -0.134 4.134 29 H 0.119 0.881 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.159 0.841 33 H 0.161 0.839 34 H 0.125 0.875 35 H 0.124 0.876 36 H 0.089 0.911 37 H 0.071 0.929 38 H 0.083 0.917 39 H 0.101 0.899 40 H 0.072 0.928 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -9.790 -11.043 12.647 19.436 hybrid contribution 1.272 -0.466 -0.366 1.403 sum -8.518 -11.509 12.281 18.864 Atomic orbital electron populations 1.23102 0.78126 1.04140 1.01699 1.86048 1.21575 1.26257 1.88817 1.20078 0.93303 0.85672 0.98959 1.20842 0.91622 0.98678 1.02367 1.21834 1.01437 0.91624 0.99583 1.20525 0.89163 0.94469 0.98360 1.20507 1.01123 0.91418 0.99337 1.19721 0.81591 0.80524 0.86009 1.90686 1.34273 1.69171 1.47550 1.49189 1.43242 1.12067 1.29908 1.23292 0.92036 0.95802 0.93123 1.23172 0.91017 0.92994 0.89652 0.87637 1.24140 0.97914 0.97107 0.99830 1.24305 0.99622 0.86921 0.89442 0.87014 1.21921 0.85695 0.95581 0.91876 1.45237 1.15890 1.59653 1.11412 1.18997 0.90857 1.27118 0.99035 0.90211 1.24824 0.98679 1.00139 0.96647 1.69913 1.37227 1.41442 1.07987 0.86199 0.83700 0.78352 0.77458 1.21181 1.21660 1.21121 1.67300 1.11543 1.26143 1.07860 1.22857 1.00381 0.86998 1.03180 0.88053 0.92456 0.92311 0.84067 0.83928 0.87548 0.87603 0.91120 0.92856 0.91655 0.89890 0.92764 0.93548 0.93547 0.82765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.82 101.05 0.99 1.16 16 2 O -0.31 -3.39 10.51 -19.44 -0.20 -3.59 16 3 C 0.07 0.82 6.71 -39.07 -0.26 0.56 16 4 C -0.11 -1.27 10.13 -39.14 -0.40 -1.67 16 5 C -0.12 -1.53 9.70 -39.46 -0.38 -1.91 16 6 C 0.11 1.68 5.76 -82.58 -0.48 1.20 16 7 C -0.08 -1.18 5.39 -29.04 -0.16 -1.33 16 8 C 0.53 9.98 7.83 -10.99 -0.09 9.89 16 9 O -0.54 -12.03 15.68 5.56 0.09 -11.95 16 10 N -0.61 -11.29 2.95 -156.76 -0.46 -11.75 16 11 C 0.08 1.37 6.01 -1.67 -0.01 1.36 16 12 C 0.14 2.56 5.53 -62.56 -0.35 2.22 16 13 H 0.11 1.71 8.14 -51.93 -0.42 1.29 16 14 C -0.15 -2.56 6.81 -22.29 -0.15 -2.72 16 15 C 0.10 1.97 5.24 -62.53 -0.33 1.64 16 16 H 0.11 2.20 8.05 -51.93 -0.42 1.78 16 17 C 0.17 4.21 4.76 -1.68 -0.01 4.20 16 18 N -0.60 -14.26 3.02 -156.35 -0.47 -14.73 16 19 C -0.23 -6.12 10.37 -15.06 -0.16 -6.27 16 20 H 0.08 1.99 7.83 -52.49 -0.41 1.58 16 21 C -0.01 -0.17 5.49 -17.43 -0.10 -0.26 16 22 N -0.92 -26.78 10.56 55.49 0.59 -26.19 16 23 Si 0.91 21.58 29.55 -169.99 -5.02 16.56 16 24 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 25 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 26 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 27 N -0.42 -6.70 9.21 -9.35 -0.09 -6.79 16 28 C 0.02 0.33 10.22 -17.37 -0.18 0.15 16 29 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.33 7.68 -51.93 -0.40 -0.07 16 31 H 0.06 0.39 7.68 -51.93 -0.40 -0.01 16 32 H 0.14 1.31 8.06 -52.49 -0.42 0.88 16 33 H 0.14 1.36 7.94 -52.49 -0.42 0.94 16 34 H 0.11 1.29 7.86 -51.93 -0.41 0.88 16 35 H 0.11 1.27 8.14 -51.93 -0.42 0.85 16 36 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 40 H 0.05 1.45 7.46 -51.93 -0.39 1.06 16 41 H 0.05 1.29 7.68 -51.93 -0.40 0.89 16 42 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 43 H 0.16 1.64 6.32 -52.48 -0.33 1.31 16 LS Contribution 354.44 15.07 5.34 5.34 Total: -1.00 -34.53 354.44 -8.36 -42.89 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -6.09 Total: 1.99 kcal Atomic # 6 Polarization: 10.26 SS G_CDS: -2.04 Total: 8.22 kcal Atomic # 7 Polarization: -59.03 SS G_CDS: -0.43 Total: -59.46 kcal Atomic # 8 Polarization: -15.42 SS G_CDS: -0.12 Total: -15.54 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -34.53 -8.36 -42.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032589152.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.450 kcal (2) G-P(sol) polarization free energy of solvation -34.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.888 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds