Wall clock time and date at job start Tue Mar 31 2020 11:41:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35903 * 116.99916 * 2 1 4 4 C 1.39137 * 120.47491 * 179.97438 * 3 2 1 5 5 C 1.38542 * 118.37461 * 179.75870 * 4 3 2 6 6 C 1.38255 * 119.22188 * 0.52853 * 5 4 3 7 7 C 1.50693 * 119.55490 * 179.73390 * 6 5 4 8 8 C 1.50706 * 109.47172 * 124.72941 * 7 6 5 9 9 O 1.21282 * 119.99536 * 359.97438 * 8 7 6 10 10 N 1.34765 * 120.00292 * 179.97438 * 8 7 6 11 11 C 1.47870 * 126.94601 * 0.02791 * 10 8 7 12 12 C 1.56020 * 105.10881 * 181.97955 * 11 10 8 13 13 H 1.08998 * 116.25146 * 159.68230 * 12 11 10 14 14 C 1.57083 * 99.60533 * 32.80071 * 12 11 10 15 15 C 1.49291 * 126.94717 * 179.97438 * 10 8 7 16 16 H 1.08998 * 116.15432 * 15.86487 * 15 10 8 17 17 C 1.56019 * 104.09450 * 246.72193 * 15 10 8 18 18 N 1.47869 * 105.10550 * 288.76651 * 17 15 10 19 19 C 1.36935 * 126.94823 * 181.96668 * 18 17 15 20 20 H 1.07994 * 120.00433 * 180.02562 * 19 18 17 21 21 C 1.38811 * 119.99778 * 0.04395 * 19 18 17 22 22 N 1.31620 * 120.00231 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00057 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47142 * 59.99679 * 23 21 19 25 25 H 1.48505 * 109.47490 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.47293 * 299.99779 * 23 21 19 27 27 N 1.31850 * 120.88162 * 359.45515 * 6 5 4 28 28 C 1.31840 * 121.78282 * 0.28245 * 27 6 5 29 29 H 1.09006 * 109.47219 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47096 * 299.99772 * 1 2 3 31 31 H 1.09005 * 109.46962 * 60.00066 * 1 2 3 32 32 H 1.08001 * 120.81089 * 0.02562 * 4 3 2 33 33 H 1.07995 * 120.38516 * 180.26028 * 5 4 3 34 34 H 1.08994 * 109.47375 * 4.72872 * 7 6 5 35 35 H 1.08995 * 109.47135 * 244.72500 * 7 6 5 36 36 H 1.08999 * 110.31475 * 63.06655 * 11 10 8 37 37 H 1.09000 * 110.31654 * 300.88552 * 11 10 8 38 38 H 1.09004 * 112.36612 * 64.27901 * 14 12 11 39 39 H 1.08995 * 112.36754 * 191.71688 * 14 12 11 40 40 H 1.08999 * 110.31358 * 169.85773 * 17 15 10 41 41 H 1.09001 * 110.31506 * 47.67151 * 17 15 10 42 42 H 0.96997 * 120.00180 * 180.02562 * 22 21 19 43 43 H 1.08004 * 119.65343 * 179.97438 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4348 1.2953 0.0005 5 6 4.0181 2.5519 -0.0046 6 6 3.2079 3.6721 0.0010 7 6 3.8344 5.0427 0.0016 8 6 3.3025 5.8387 -1.1623 9 8 2.4945 5.3417 -1.9181 10 7 3.7245 7.1026 -1.3633 11 6 4.6987 7.8553 -0.5441 12 6 4.7719 9.2703 -1.1972 13 1 5.1569 10.0725 -0.5676 14 6 3.2904 9.4027 -1.7026 15 6 3.3039 8.0256 -2.4588 16 1 2.4009 7.7468 -3.0018 17 6 4.5945 8.2115 -3.3155 18 7 5.4934 9.0399 -2.4835 19 6 6.7368 9.5016 -2.8237 20 1 7.3000 10.1018 -2.1245 21 6 7.2732 9.1986 -4.0676 22 7 6.5870 8.4671 -4.9198 23 14 8.9697 9.8279 -4.5316 24 1 9.9725 9.3023 -3.5708 25 1 9.3102 9.3690 -5.9023 26 1 8.9754 11.3123 -4.4905 27 7 1.8944 3.5573 0.0005 28 6 1.3002 2.3804 0.0001 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 4.0432 0.4029 0.0005 33 1 5.0931 2.6551 -0.0086 34 1 4.9165 4.9475 -0.0876 35 1 3.5901 5.5535 0.9329 36 1 5.6750 7.3718 -0.5779 37 1 4.3487 7.9313 0.4854 38 1 2.5724 9.4190 -0.8826 39 1 3.1570 10.2464 -2.3796 40 1 4.3594 8.7265 -4.2469 41 1 5.0540 7.2449 -3.5221 42 1 6.9620 8.2551 -5.7889 43 1 0.2215 2.3264 0.0000 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032589152.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:30 Heat of formation + Delta-G solvation = 7.374472 kcal Electronic energy + Delta-G solvation = -26351.167923 eV Core-core repulsion = 22591.027641 eV Total energy + Delta-G solvation = -3760.140282 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.82818 -41.35371 -39.62250 -38.73495 -35.41096 -33.72772 -33.40434 -32.90721 -30.79561 -30.19673 -28.97934 -28.01221 -26.93855 -25.22312 -24.38631 -23.41872 -21.92930 -21.37633 -19.97746 -19.14625 -18.80972 -18.16531 -17.74873 -17.44811 -16.84993 -16.80677 -16.35982 -16.16961 -15.70861 -15.30144 -15.14181 -14.87442 -14.70959 -14.29780 -13.98332 -13.75365 -13.50762 -13.34060 -13.14016 -13.06852 -12.99046 -12.78527 -12.74975 -12.63446 -12.31413 -12.27770 -12.13477 -12.05865 -11.83584 -11.49670 -10.93397 -10.71736 -10.63284 -10.35025 -9.45741 -9.35316 -8.88120 -7.81803 -5.17733 0.09275 0.29668 1.48336 1.51201 1.57256 1.76468 2.04864 2.22953 2.50782 2.78233 3.30208 3.35974 3.42411 3.65031 3.68017 3.73294 3.88086 3.95258 4.05377 4.08360 4.24847 4.30123 4.35718 4.37689 4.49963 4.53583 4.64306 4.67306 4.72319 4.76596 4.88178 4.94832 5.00197 5.05498 5.09829 5.18273 5.28760 5.47948 5.49219 5.58858 5.67633 6.12186 6.20460 6.75775 7.02722 7.05061 7.29311 7.73740 8.44688 9.29085 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.022144 B = 0.002881 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.150733 B = 9717.036212 C =10246.687066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.323 6.323 3 C 0.068 3.932 4 C -0.115 4.115 5 C -0.123 4.123 6 C 0.085 3.915 7 C -0.073 4.073 8 C 0.526 3.474 9 O -0.585 6.585 10 N -0.613 5.613 11 C 0.090 3.910 12 C 0.135 3.865 13 H 0.137 0.863 14 C -0.129 4.129 15 C 0.100 3.900 16 H 0.105 0.895 17 C 0.189 3.811 18 N -0.617 5.617 19 C -0.228 4.228 20 H 0.098 0.902 21 C -0.074 4.074 22 N -0.959 5.959 23 Si 0.978 3.022 24 H -0.275 1.275 25 H -0.305 1.305 26 H -0.274 1.274 27 N -0.454 5.454 28 C 0.009 3.991 29 H 0.126 0.874 30 H 0.068 0.932 31 H 0.059 0.941 32 H 0.165 0.835 33 H 0.169 0.831 34 H 0.127 0.873 35 H 0.132 0.868 36 H 0.059 0.941 37 H 0.104 0.896 38 H 0.101 0.899 39 H 0.077 0.923 40 H 0.013 0.987 41 H -0.004 1.004 42 H 0.243 0.757 43 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.810 -11.150 16.430 21.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.236 6.236 3 C 0.020 3.980 4 C -0.141 4.141 5 C -0.143 4.143 6 C -0.053 4.053 7 C -0.112 4.112 8 C 0.315 3.685 9 O -0.465 6.465 10 N -0.346 5.346 11 C -0.034 4.034 12 C 0.029 3.971 13 H 0.155 0.845 14 C -0.168 4.168 15 C -0.004 4.004 16 H 0.123 0.877 17 C 0.063 3.937 18 N -0.341 5.341 19 C -0.357 4.357 20 H 0.115 0.885 21 C -0.266 4.266 22 N -0.608 5.608 23 Si 0.806 3.194 24 H -0.201 1.201 25 H -0.232 1.232 26 H -0.200 1.200 27 N -0.164 5.164 28 C -0.150 4.150 29 H 0.145 0.855 30 H 0.087 0.913 31 H 0.077 0.923 32 H 0.183 0.817 33 H 0.187 0.813 34 H 0.145 0.855 35 H 0.150 0.850 36 H 0.077 0.923 37 H 0.122 0.878 38 H 0.120 0.880 39 H 0.096 0.904 40 H 0.031 0.969 41 H 0.014 0.986 42 H 0.052 0.948 43 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -9.506 -10.964 15.881 21.512 hybrid contribution 1.089 -0.551 -1.322 1.799 sum -8.417 -11.515 14.558 20.381 Atomic orbital electron populations 1.23409 0.76191 1.06053 1.02299 1.86045 1.23613 1.25463 1.88456 1.20206 0.93787 0.85940 0.98068 1.21214 0.91815 0.99465 1.01640 1.22120 1.02616 0.91133 0.98417 1.20754 0.89317 0.95357 0.99895 1.20530 1.01906 0.90783 0.98010 1.20598 0.80851 0.80316 0.86687 1.90659 1.36380 1.69981 1.49470 1.49293 1.43518 1.12320 1.29488 1.23251 0.91382 0.93775 0.94971 1.23613 0.90741 0.94963 0.87789 0.84543 1.24039 0.97975 0.94659 1.00113 1.24090 0.96935 0.89596 0.89733 0.87682 1.21488 0.87747 0.92677 0.91769 1.45494 1.15586 1.59358 1.13675 1.19520 0.91739 1.25592 0.98866 0.88475 1.25678 1.02390 1.01324 0.97195 1.70171 1.38852 1.43811 1.07987 0.85157 0.79764 0.78117 0.76321 1.20053 1.23215 1.20019 1.67237 1.12540 1.27550 1.09068 1.23139 1.01353 0.86915 1.03596 0.85539 0.91295 0.92277 0.81704 0.81341 0.85483 0.85015 0.92255 0.87770 0.88022 0.90430 0.96854 0.98587 0.94837 0.81238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.18 9.82 113.37 1.11 1.29 16 2 O -0.32 -6.49 10.51 -92.46 -0.97 -7.46 16 3 C 0.07 1.59 6.71 22.60 0.15 1.74 16 4 C -0.12 -2.50 10.13 22.56 0.23 -2.28 16 5 C -0.12 -2.81 9.70 22.35 0.22 -2.60 16 6 C 0.09 2.42 5.76 42.56 0.25 2.67 16 7 C -0.07 -1.90 5.39 29.10 0.16 -1.74 16 8 C 0.53 19.31 7.83 87.66 0.69 20.00 16 9 O -0.58 -26.62 15.68 -3.04 -0.05 -26.67 16 10 N -0.61 -21.97 2.95 -768.27 -2.26 -24.23 16 11 C 0.09 2.69 6.01 87.16 0.52 3.22 16 12 C 0.14 4.54 5.53 46.93 0.26 4.80 16 13 H 0.14 3.79 8.14 -2.39 -0.02 3.77 16 14 C -0.13 -4.08 6.81 33.47 0.23 -3.86 16 15 C 0.10 3.98 5.24 46.94 0.25 4.22 16 16 H 0.11 4.28 8.05 -2.39 -0.02 4.27 16 17 C 0.19 9.57 4.76 87.16 0.42 9.98 16 18 N -0.62 -29.33 3.02 -648.58 -1.96 -31.29 16 19 C -0.23 -11.96 10.37 84.03 0.87 -11.09 16 20 H 0.10 4.65 7.83 -2.91 -0.02 4.62 16 21 C -0.07 -4.11 5.49 84.86 0.47 -3.65 16 22 N -0.96 -58.73 10.56 21.65 0.23 -58.50 16 23 Si 0.98 45.00 29.55 68.60 2.03 47.03 16 24 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 25 H -0.31 -14.63 7.11 99.48 0.71 -13.92 16 26 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 27 N -0.45 -14.34 9.21 -183.49 -1.69 -16.03 16 28 C 0.01 0.23 10.22 84.80 0.87 1.09 16 29 H 0.13 0.87 8.14 -2.38 -0.02 0.85 16 30 H 0.07 0.68 7.68 -2.39 -0.02 0.66 16 31 H 0.06 0.72 7.68 -2.38 -0.02 0.70 16 32 H 0.17 2.67 8.06 -2.91 -0.02 2.65 16 33 H 0.17 2.78 7.94 -2.91 -0.02 2.76 16 34 H 0.13 2.75 7.86 -2.39 -0.02 2.73 16 35 H 0.13 2.71 8.14 -2.39 -0.02 2.69 16 36 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 38 H 0.10 2.57 8.14 -2.39 -0.02 2.55 16 39 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 40 H 0.01 0.77 7.46 -2.39 -0.02 0.75 16 41 H 0.00 -0.24 7.68 -2.39 -0.02 -0.26 16 42 H 0.24 14.72 8.31 -92.71 -0.77 13.95 16 43 H 0.17 3.56 6.32 -2.91 -0.02 3.54 16 Total: -1.00 -80.06 354.44 3.01 -77.05 By element: Atomic # 1 Polarization: 15.29 SS G_CDS: 1.02 Total: 16.30 kcal Atomic # 6 Polarization: 17.13 SS G_CDS: 6.68 Total: 23.80 kcal Atomic # 7 Polarization: -124.37 SS G_CDS: -5.68 Total: -130.05 kcal Atomic # 8 Polarization: -33.12 SS G_CDS: -1.02 Total: -34.13 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Total: -80.06 3.01 -77.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032589152.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.424 kcal (2) G-P(sol) polarization free energy of solvation -80.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.050 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds