Wall clock time and date at job start Tue Mar 31 2020 11:39:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35681 * 116.99639 * 2 1 4 4 C 1.38918 * 119.67888 * 180.02562 * 3 2 1 5 5 C 1.38386 * 119.11127 * 179.97438 * 4 3 2 6 6 C 1.50690 * 120.76055 * 179.97438 * 5 4 3 7 7 C 1.50701 * 109.47208 * 89.99585 * 6 5 4 8 8 O 1.21283 * 119.99896 * 0.02562 * 7 6 5 9 9 N 1.34776 * 120.00373 * 179.97438 * 7 6 5 10 10 C 1.49761 * 127.90055 * 359.23140 * 9 7 6 11 11 C 1.56020 * 105.32126 * 182.13124 * 10 9 7 12 12 H 1.08996 * 116.89578 * 159.53520 * 11 10 9 13 13 C 1.57087 * 99.60394 * 33.13399 * 11 10 9 14 14 C 1.49287 * 126.94483 * 180.02562 * 9 7 6 15 15 H 1.08999 * 116.15478 * 15.84079 * 14 9 7 16 16 C 1.56019 * 104.08969 * 246.69609 * 14 9 7 17 17 N 1.47871 * 105.19451 * 287.86874 * 16 14 9 18 18 C 1.36936 * 126.94621 * 182.03671 * 17 16 14 19 19 H 1.08000 * 119.99885 * 173.67477 * 18 17 16 20 20 C 1.38803 * 120.00272 * 353.67512 * 18 17 16 21 21 N 1.31628 * 119.99954 * 6.42887 * 20 18 17 22 22 Si 1.86801 * 120.00258 * 186.42683 * 20 18 17 23 23 H 1.48492 * 109.47224 * 94.98713 * 22 20 18 24 24 H 1.48500 * 109.46934 * 214.98644 * 22 20 18 25 25 H 1.48495 * 109.46820 * 334.98384 * 22 20 18 26 26 C 1.38825 * 118.47976 * 0.27151 * 5 4 3 27 27 C 1.38047 * 119.29438 * 359.45426 * 26 5 4 28 28 N 1.31969 * 120.83293 * 0.56046 * 27 26 5 29 29 H 1.09004 * 109.47460 * 59.99789 * 1 2 3 30 30 H 1.09000 * 109.47213 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47227 * 299.99925 * 1 2 3 32 32 H 1.07995 * 120.44974 * 359.97438 * 4 3 2 33 33 H 1.09006 * 109.47311 * 330.00281 * 6 5 4 34 34 H 1.08998 * 109.47670 * 210.00122 * 6 5 4 35 35 H 1.08998 * 109.93672 * 63.29403 * 10 9 7 36 36 H 1.09005 * 110.57542 * 301.30073 * 10 9 7 37 37 H 1.08996 * 112.36408 * 191.71267 * 13 11 10 38 38 H 1.08997 * 112.36584 * 64.27803 * 13 11 10 39 39 H 1.08994 * 110.31452 * 46.82627 * 16 14 9 40 40 H 1.09002 * 110.31574 * 168.91817 * 16 14 9 41 41 H 0.96998 * 119.99891 * 179.97438 * 21 20 18 42 42 H 1.08000 * 120.35390 * 179.70412 * 26 5 4 43 43 H 1.08002 * 119.58745 * 180.27396 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2090 0.0000 4 6 3.4325 1.2740 -0.0005 5 6 4.0485 2.5132 -0.0011 6 6 5.5511 2.6270 -0.0011 7 6 6.0520 2.6642 -1.4219 8 8 5.2662 2.6047 -2.3437 9 7 7.3733 2.7647 -1.6683 10 6 8.4893 2.8663 -0.6747 11 6 9.7879 3.0127 -1.5270 12 1 10.6593 3.4376 -1.0288 13 6 9.2125 3.8215 -2.7445 14 6 8.0355 2.8148 -3.0053 15 1 7.3878 3.0332 -3.8544 16 6 8.8440 1.4825 -3.0789 17 7 9.9747 1.6632 -2.1432 18 6 10.9858 0.7743 -1.8927 19 1 11.8136 1.0620 -1.2615 20 6 10.9469 -0.4963 -2.4500 21 7 10.0074 -0.8056 -3.3185 22 14 12.2279 -1.7675 -1.9676 23 1 11.6944 -2.6169 -0.8726 24 1 12.5484 -2.6176 -3.1422 25 1 13.4591 -1.0784 -1.5046 26 6 3.2504 3.6491 0.0047 27 6 1.8770 3.5097 -0.0006 28 7 1.3185 2.3141 -0.0001 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 4.0228 0.3696 -0.0005 33 1 5.9806 1.7672 0.5131 34 1 5.8462 3.5421 0.5123 35 1 8.5330 1.9598 -0.0710 36 1 8.3552 3.7394 -0.0360 37 1 9.9118 3.8675 -3.5794 38 1 8.8562 4.8099 -2.4547 39 1 8.2222 0.6446 -2.7637 40 1 9.2132 1.3192 -4.0914 41 1 9.9804 -1.6934 -3.7082 42 1 3.6992 4.6314 0.0093 43 1 1.2516 4.3903 -0.0007 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032628947.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:27 Heat of formation + Delta-G solvation = 27.715855 kcal Electronic energy + Delta-G solvation = -26423.006577 eV Core-core repulsion = 22663.748363 eV Total energy + Delta-G solvation = -3759.258214 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.74056 -39.93539 -38.31966 -37.54306 -33.75023 -33.58163 -31.60142 -30.77697 -29.40493 -28.66632 -28.15416 -27.07866 -25.22974 -23.69520 -23.42834 -22.20169 -20.49816 -19.86082 -18.54155 -17.82675 -17.25863 -17.14983 -16.32889 -16.03286 -15.99496 -15.65239 -15.13441 -14.69540 -14.36751 -14.24355 -13.96407 -13.42732 -13.37509 -13.26845 -12.74985 -12.35265 -12.23183 -12.01588 -11.88181 -11.68647 -11.57407 -11.37089 -11.27205 -11.03677 -10.89223 -10.81696 -10.64178 -10.28405 -10.10043 -9.88781 -9.71583 -9.67287 -9.34640 -8.71708 -8.52930 -8.05511 -6.95731 -5.81044 -3.15197 1.14128 1.22073 2.98810 3.01983 3.31130 3.35289 3.40083 3.43183 3.79020 4.25413 4.38747 4.53782 4.78019 4.89619 5.06834 5.08212 5.12892 5.15985 5.17356 5.19409 5.29421 5.38073 5.45867 5.52874 5.55081 5.59487 5.72382 5.74119 5.83872 5.87598 6.12792 6.23539 6.27169 6.34725 6.38282 6.44276 6.54915 6.63648 7.19199 7.36728 7.48444 7.69423 7.80399 8.03070 8.07168 8.53755 9.06385 9.67560 10.37147 11.31250 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.016664 B = 0.003234 C = 0.002881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1679.870929 B = 8655.145673 C = 9717.971532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.309 6.309 3 C 0.319 3.681 4 C -0.174 4.174 5 C 0.020 3.980 6 C -0.101 4.101 7 C 0.533 3.467 8 O -0.548 6.548 9 N -0.609 5.609 10 C 0.085 3.915 11 C 0.140 3.860 12 H 0.108 0.892 13 C -0.152 4.152 14 C 0.098 3.902 15 H 0.111 0.889 16 C 0.173 3.827 17 N -0.598 5.598 18 C -0.234 4.234 19 H 0.081 0.919 20 C -0.004 4.004 21 N -0.916 5.916 22 Si 0.911 3.089 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.280 1.280 26 C -0.196 4.196 27 C 0.136 3.864 28 N -0.545 5.545 29 H 0.058 0.942 30 H 0.094 0.906 31 H 0.056 0.944 32 H 0.140 0.860 33 H 0.107 0.893 34 H 0.106 0.894 35 H 0.073 0.927 36 H 0.056 0.944 37 H 0.084 0.916 38 H 0.065 0.935 39 H 0.050 0.950 40 H 0.051 0.949 41 H 0.254 0.746 42 H 0.135 0.865 43 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.273 9.770 8.698 17.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.216 6.216 3 C 0.141 3.859 4 C -0.194 4.194 5 C 0.012 3.988 6 C -0.141 4.141 7 C 0.321 3.679 8 O -0.427 6.427 9 N -0.343 5.343 10 C -0.040 4.040 11 C 0.031 3.969 12 H 0.125 0.875 13 C -0.191 4.191 14 C -0.005 4.005 15 H 0.129 0.871 16 C 0.048 3.952 17 N -0.322 5.322 18 C -0.362 4.362 19 H 0.099 0.901 20 C -0.201 4.201 21 N -0.562 5.562 22 Si 0.741 3.259 23 H -0.216 1.216 24 H -0.218 1.218 25 H -0.206 1.206 26 C -0.217 4.217 27 C -0.019 4.019 28 N -0.269 5.269 29 H 0.076 0.924 30 H 0.112 0.888 31 H 0.075 0.925 32 H 0.158 0.842 33 H 0.126 0.874 34 H 0.124 0.876 35 H 0.092 0.908 36 H 0.074 0.926 37 H 0.102 0.898 38 H 0.083 0.917 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.065 0.935 42 H 0.153 0.847 43 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -13.505 9.074 8.159 18.201 hybrid contribution 1.276 -0.665 0.227 1.457 sum -12.229 8.409 8.385 17.046 Atomic orbital electron populations 1.22821 0.77487 1.02756 1.02282 1.86253 1.22710 1.24639 1.87951 1.19717 0.89180 0.84612 0.92394 1.20912 0.92053 0.99154 1.07295 1.19503 0.94710 0.92285 0.92317 1.20674 0.91397 1.05663 0.96372 1.19727 0.80864 0.77006 0.90307 1.90709 1.54337 1.51344 1.46298 1.49620 1.04405 1.70813 1.09466 1.23640 0.88146 1.00369 0.91800 1.23215 0.93431 0.87945 0.92305 0.87459 1.24159 0.97822 0.96666 1.00470 1.24285 0.92023 0.98901 0.85295 0.87092 1.21936 0.87635 0.91046 0.94572 1.45300 1.27006 1.13619 1.46268 1.19035 0.98947 0.91735 1.26484 0.90131 1.24851 0.98629 0.97494 0.99139 1.69937 1.34805 1.20487 1.30995 0.86120 0.80481 0.81657 0.77603 1.21596 1.21759 1.20568 1.21801 0.94735 0.99186 1.05930 1.22270 0.92615 0.93538 0.93484 1.67258 1.40988 0.98853 1.19791 0.92375 0.88784 0.92481 0.84167 0.87443 0.87625 0.90836 0.92568 0.89761 0.91654 0.93145 0.93075 0.93544 0.84730 0.82475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.42 10.38 101.05 1.05 1.47 16 2 O -0.31 -4.29 10.48 -18.74 -0.20 -4.49 16 3 C 0.32 4.71 7.49 -17.12 -0.13 4.58 16 4 C -0.17 -2.55 9.75 -39.28 -0.38 -2.93 16 5 C 0.02 0.27 4.41 -104.35 -0.46 -0.19 16 6 C -0.10 -1.31 5.24 -29.04 -0.15 -1.46 16 7 C 0.53 9.28 7.90 -10.98 -0.09 9.19 16 8 O -0.55 -11.54 16.38 5.56 0.09 -11.45 16 9 N -0.61 -10.68 3.01 -155.25 -0.47 -11.15 16 10 C 0.09 1.34 6.16 -0.61 0.00 1.33 16 11 C 0.14 2.45 5.54 -62.41 -0.35 2.10 16 12 H 0.11 1.67 8.14 -51.93 -0.42 1.24 16 13 C -0.15 -2.45 6.82 -22.31 -0.15 -2.60 16 14 C 0.10 1.85 5.19 -62.56 -0.32 1.52 16 15 H 0.11 2.08 8.05 -51.93 -0.42 1.67 16 16 C 0.17 4.08 4.76 -1.67 -0.01 4.08 16 17 N -0.60 -13.94 3.03 -156.16 -0.47 -14.42 16 18 C -0.23 -6.09 10.37 -15.06 -0.16 -6.24 16 19 H 0.08 1.99 7.84 -52.49 -0.41 1.58 16 20 C 0.00 -0.11 5.49 -17.43 -0.10 -0.20 16 21 N -0.92 -26.45 10.61 55.49 0.59 -25.86 16 22 Si 0.91 21.40 29.56 -169.99 -5.02 16.38 16 23 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 25 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 26 C -0.20 -2.34 9.81 -39.43 -0.39 -2.73 16 27 C 0.14 1.59 11.18 -17.56 -0.20 1.40 16 28 N -0.54 -7.50 9.22 -13.33 -0.12 -7.62 16 29 H 0.06 0.59 8.10 -51.93 -0.42 0.17 16 30 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.54 8.10 -51.93 -0.42 0.12 16 32 H 0.14 2.00 8.06 -52.49 -0.42 1.58 16 33 H 0.11 1.30 8.10 -51.93 -0.42 0.88 16 34 H 0.11 1.05 8.10 -51.93 -0.42 0.63 16 35 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 38 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.05 1.38 7.52 -51.93 -0.39 0.99 16 40 H 0.05 1.34 7.63 -51.93 -0.40 0.94 16 41 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 42 H 0.13 1.28 8.06 -52.49 -0.42 0.85 16 43 H 0.16 1.29 8.06 -52.49 -0.42 0.87 16 LS Contribution 358.86 15.07 5.41 5.41 Total: -1.00 -33.36 358.86 -8.27 -41.63 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: -6.24 Total: 2.25 kcal Atomic # 6 Polarization: 11.15 SS G_CDS: -1.83 Total: 9.32 kcal Atomic # 7 Polarization: -58.57 SS G_CDS: -0.48 Total: -59.05 kcal Atomic # 8 Polarization: -15.83 SS G_CDS: -0.11 Total: -15.94 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -33.36 -8.27 -41.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032628947.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.341 kcal (2) G-P(sol) polarization free energy of solvation -33.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.625 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds