Wall clock time and date at job start Tue Mar 31 2020 11:39:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35681 * 116.99639 * 2 1 4 4 C 1.38918 * 119.67888 * 180.02562 * 3 2 1 5 5 C 1.38386 * 119.11127 * 179.97438 * 4 3 2 6 6 C 1.50690 * 120.76055 * 179.97438 * 5 4 3 7 7 C 1.50701 * 109.47208 * 89.99585 * 6 5 4 8 8 O 1.21283 * 119.99896 * 0.02562 * 7 6 5 9 9 N 1.34776 * 120.00373 * 179.97438 * 7 6 5 10 10 C 1.49761 * 127.90055 * 359.23140 * 9 7 6 11 11 C 1.56020 * 105.32126 * 182.13124 * 10 9 7 12 12 H 1.08996 * 116.89578 * 159.53520 * 11 10 9 13 13 C 1.57087 * 99.60394 * 33.13399 * 11 10 9 14 14 C 1.49287 * 126.94483 * 180.02562 * 9 7 6 15 15 H 1.08999 * 116.15478 * 15.84079 * 14 9 7 16 16 C 1.56019 * 104.08969 * 246.69609 * 14 9 7 17 17 N 1.47871 * 105.19451 * 287.86874 * 16 14 9 18 18 C 1.36936 * 126.94621 * 182.03671 * 17 16 14 19 19 H 1.08000 * 119.99885 * 173.67477 * 18 17 16 20 20 C 1.38803 * 120.00272 * 353.67512 * 18 17 16 21 21 N 1.31628 * 119.99954 * 6.42887 * 20 18 17 22 22 Si 1.86801 * 120.00258 * 186.42683 * 20 18 17 23 23 H 1.48492 * 109.47224 * 94.98713 * 22 20 18 24 24 H 1.48500 * 109.46934 * 214.98644 * 22 20 18 25 25 H 1.48495 * 109.46820 * 334.98384 * 22 20 18 26 26 C 1.38825 * 118.47976 * 0.27151 * 5 4 3 27 27 C 1.38047 * 119.29438 * 359.45426 * 26 5 4 28 28 N 1.31969 * 120.83293 * 0.56046 * 27 26 5 29 29 H 1.09004 * 109.47460 * 59.99789 * 1 2 3 30 30 H 1.09000 * 109.47213 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47227 * 299.99925 * 1 2 3 32 32 H 1.07995 * 120.44974 * 359.97438 * 4 3 2 33 33 H 1.09006 * 109.47311 * 330.00281 * 6 5 4 34 34 H 1.08998 * 109.47670 * 210.00122 * 6 5 4 35 35 H 1.08998 * 109.93672 * 63.29403 * 10 9 7 36 36 H 1.09005 * 110.57542 * 301.30073 * 10 9 7 37 37 H 1.08996 * 112.36408 * 191.71267 * 13 11 10 38 38 H 1.08997 * 112.36584 * 64.27803 * 13 11 10 39 39 H 1.08994 * 110.31452 * 46.82627 * 16 14 9 40 40 H 1.09002 * 110.31574 * 168.91817 * 16 14 9 41 41 H 0.96998 * 119.99891 * 179.97438 * 21 20 18 42 42 H 1.08000 * 120.35390 * 179.70412 * 26 5 4 43 43 H 1.08002 * 119.58745 * 180.27396 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2090 0.0000 4 6 3.4325 1.2740 -0.0005 5 6 4.0485 2.5132 -0.0011 6 6 5.5511 2.6270 -0.0011 7 6 6.0520 2.6642 -1.4219 8 8 5.2662 2.6047 -2.3437 9 7 7.3733 2.7647 -1.6683 10 6 8.4893 2.8663 -0.6747 11 6 9.7879 3.0127 -1.5270 12 1 10.6593 3.4376 -1.0288 13 6 9.2125 3.8215 -2.7445 14 6 8.0355 2.8148 -3.0053 15 1 7.3878 3.0332 -3.8544 16 6 8.8440 1.4825 -3.0789 17 7 9.9747 1.6632 -2.1432 18 6 10.9858 0.7743 -1.8927 19 1 11.8136 1.0620 -1.2615 20 6 10.9469 -0.4963 -2.4500 21 7 10.0074 -0.8056 -3.3185 22 14 12.2279 -1.7675 -1.9676 23 1 11.6944 -2.6169 -0.8726 24 1 12.5484 -2.6176 -3.1422 25 1 13.4591 -1.0784 -1.5046 26 6 3.2504 3.6491 0.0047 27 6 1.8770 3.5097 -0.0006 28 7 1.3185 2.3141 -0.0001 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 4.0228 0.3696 -0.0005 33 1 5.9806 1.7672 0.5131 34 1 5.8462 3.5421 0.5123 35 1 8.5330 1.9598 -0.0710 36 1 8.3552 3.7394 -0.0360 37 1 9.9118 3.8675 -3.5794 38 1 8.8562 4.8099 -2.4547 39 1 8.2222 0.6446 -2.7637 40 1 9.2132 1.3192 -4.0914 41 1 9.9804 -1.6934 -3.7082 42 1 3.6992 4.6314 0.0093 43 1 1.2516 4.3903 -0.0007 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032628947.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:26 Heat of formation + Delta-G solvation = 4.430369 kcal Electronic energy + Delta-G solvation = -26424.016311 eV Core-core repulsion = 22663.748363 eV Total energy + Delta-G solvation = -3760.267948 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.79850 -41.31054 -39.58170 -38.71012 -35.39304 -34.80224 -33.26222 -31.73664 -30.94744 -30.24270 -29.33287 -27.97537 -26.94962 -25.25037 -24.45115 -23.37944 -21.89937 -21.37095 -20.03268 -18.98437 -18.72803 -18.13450 -17.89026 -17.33804 -16.98519 -16.89920 -16.43469 -16.24396 -15.69852 -15.46879 -15.22441 -14.86476 -14.73184 -14.33169 -13.91886 -13.69902 -13.53763 -13.35784 -13.20032 -13.10221 -12.89860 -12.80307 -12.71428 -12.51826 -12.29922 -12.18131 -12.10754 -12.02474 -11.83434 -11.51795 -11.13433 -10.76728 -10.70112 -10.51741 -9.52722 -9.49586 -8.88763 -7.85110 -5.19787 0.14428 0.22963 1.46982 1.48219 1.57090 1.65610 1.97301 2.14554 2.48901 2.77893 3.32719 3.33485 3.40505 3.56414 3.65635 3.89673 3.93539 3.95966 4.07609 4.11888 4.17068 4.24853 4.40415 4.41991 4.50600 4.53416 4.65648 4.71476 4.72139 4.77511 4.84083 4.91573 4.97629 5.04419 5.17460 5.28058 5.31603 5.44784 5.47688 5.56413 5.66627 6.10710 6.23378 6.68707 6.83070 7.03157 7.18152 7.72050 8.43208 9.26413 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.016664 B = 0.003234 C = 0.002881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1679.870929 B = 8655.145673 C = 9717.971532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.329 6.329 3 C 0.301 3.699 4 C -0.200 4.200 5 C 0.008 3.992 6 C -0.089 4.089 7 C 0.528 3.472 8 O -0.592 6.592 9 N -0.612 5.612 10 C 0.093 3.907 11 C 0.133 3.867 12 H 0.139 0.861 13 C -0.128 4.128 14 C 0.099 3.901 15 H 0.106 0.894 16 C 0.186 3.814 17 N -0.618 5.618 18 C -0.227 4.227 19 H 0.098 0.902 20 C -0.072 4.072 21 N -0.957 5.957 22 Si 0.974 3.026 23 H -0.292 1.292 24 H -0.304 1.304 25 H -0.259 1.259 26 C -0.193 4.193 27 C 0.133 3.867 28 N -0.555 5.555 29 H 0.054 0.946 30 H 0.119 0.881 31 H 0.062 0.938 32 H 0.129 0.871 33 H 0.113 0.887 34 H 0.149 0.851 35 H 0.056 0.944 36 H 0.114 0.886 37 H 0.077 0.923 38 H 0.107 0.893 39 H -0.002 1.002 40 H 0.008 0.992 41 H 0.242 0.758 42 H 0.167 0.833 43 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.931 13.136 11.186 20.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.236 6.236 3 C 0.123 3.877 4 C -0.221 4.221 5 C 0.000 4.000 6 C -0.128 4.128 7 C 0.318 3.682 8 O -0.474 6.474 9 N -0.345 5.345 10 C -0.031 4.031 11 C 0.027 3.973 12 H 0.156 0.844 13 C -0.167 4.167 14 C -0.004 4.004 15 H 0.124 0.876 16 C 0.060 3.940 17 N -0.343 5.343 18 C -0.356 4.356 19 H 0.115 0.885 20 C -0.265 4.265 21 N -0.606 5.606 22 Si 0.803 3.197 23 H -0.220 1.220 24 H -0.232 1.232 25 H -0.183 1.183 26 C -0.212 4.212 27 C -0.022 4.022 28 N -0.279 5.279 29 H 0.072 0.928 30 H 0.137 0.863 31 H 0.081 0.919 32 H 0.147 0.853 33 H 0.131 0.869 34 H 0.167 0.833 35 H 0.075 0.925 36 H 0.132 0.868 37 H 0.096 0.904 38 H 0.125 0.875 39 H 0.016 0.984 40 H 0.027 0.973 41 H 0.051 0.949 42 H 0.184 0.816 43 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -13.140 12.490 10.706 21.054 hybrid contribution 1.123 -1.645 -0.557 2.068 sum -12.016 10.845 10.149 19.105 Atomic orbital electron populations 1.23041 0.75759 1.04508 1.02318 1.86221 1.24577 1.24822 1.88016 1.19899 0.89438 0.85204 0.93191 1.21039 0.92440 0.99655 1.08970 1.19711 0.95336 0.92423 0.92530 1.20682 0.90822 1.08046 0.93267 1.20526 0.80289 0.75614 0.91797 1.90688 1.55401 1.53145 1.48166 1.49707 1.05093 1.70663 1.09045 1.23589 0.86203 1.02116 0.91148 1.23681 0.95496 0.84935 0.93140 0.84359 1.24056 0.95711 0.97461 0.99497 1.24063 0.92786 0.96988 0.86611 0.87565 1.21519 0.87830 0.92267 0.92399 1.45572 1.26105 1.15809 1.46788 1.19544 0.99488 0.91950 1.24608 0.88468 1.25680 1.00920 0.99880 1.00010 1.70187 1.37280 1.20022 1.33123 0.85106 0.79015 0.79135 0.76401 1.21996 1.23161 1.18318 1.22181 0.94745 0.99909 1.04405 1.22986 0.93407 0.93904 0.91868 1.67330 1.41207 0.99308 1.20091 0.92771 0.86258 0.91907 0.85322 0.86872 0.83299 0.92523 0.86797 0.90424 0.87489 0.98415 0.97335 0.94879 0.81559 0.78777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.76 10.38 113.37 1.18 1.94 16 2 O -0.33 -9.41 10.48 -89.99 -0.94 -10.35 16 3 C 0.30 8.98 7.49 84.79 0.63 9.61 16 4 C -0.20 -6.01 9.75 22.47 0.22 -5.79 16 5 C 0.01 0.21 4.41 -19.69 -0.09 0.12 16 6 C -0.09 -2.06 5.24 29.10 0.15 -1.91 16 7 C 0.53 17.66 7.90 87.66 0.69 18.35 16 8 O -0.59 -25.02 16.38 -3.04 -0.05 -25.07 16 9 N -0.61 -20.36 3.01 -763.48 -2.30 -22.66 16 10 C 0.09 2.56 6.16 86.79 0.54 3.09 16 11 C 0.13 4.23 5.54 46.89 0.26 4.49 16 12 H 0.14 3.58 8.14 -2.39 -0.02 3.56 16 13 C -0.13 -3.74 6.82 33.46 0.23 -3.51 16 14 C 0.10 3.73 5.19 46.92 0.24 3.97 16 15 H 0.11 4.07 8.05 -2.39 -0.02 4.05 16 16 C 0.19 9.20 4.76 87.16 0.41 9.62 16 17 N -0.62 -28.77 3.03 -647.97 -1.96 -30.74 16 18 C -0.23 -11.77 10.37 84.03 0.87 -10.90 16 19 H 0.10 4.62 7.84 -2.91 -0.02 4.59 16 20 C -0.07 -4.03 5.49 84.86 0.47 -3.57 16 21 N -0.96 -58.54 10.61 21.65 0.23 -58.31 16 22 Si 0.97 44.97 29.56 68.60 2.03 47.00 16 23 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 24 H -0.30 -14.54 7.11 99.48 0.71 -13.84 16 25 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 26 C -0.19 -4.01 9.81 22.36 0.22 -3.79 16 27 C 0.13 2.79 11.18 84.63 0.95 3.73 16 28 N -0.55 -14.76 9.22 -308.94 -2.85 -17.61 16 29 H 0.05 1.10 8.10 -2.39 -0.02 1.08 16 30 H 0.12 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.06 1.15 8.10 -2.39 -0.02 1.13 16 32 H 0.13 3.96 8.06 -2.91 -0.02 3.93 16 33 H 0.11 2.52 8.10 -2.38 -0.02 2.50 16 34 H 0.15 2.14 8.10 -2.39 -0.02 2.12 16 35 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.11 1.97 8.14 -2.38 -0.02 1.95 16 37 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 38 H 0.11 2.34 8.14 -2.39 -0.02 2.32 16 39 H 0.00 -0.14 7.52 -2.39 -0.02 -0.16 16 40 H 0.01 0.48 7.63 -2.39 -0.02 0.46 16 41 H 0.24 14.68 8.31 -92.71 -0.77 13.91 16 42 H 0.17 2.34 8.06 -2.91 -0.02 2.31 16 43 H 0.20 2.44 8.06 -2.91 -0.02 2.41 16 Total: -1.00 -79.25 358.86 2.13 -77.12 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: 1.01 Total: 15.17 kcal Atomic # 6 Polarization: 18.48 SS G_CDS: 6.97 Total: 25.45 kcal Atomic # 7 Polarization: -122.43 SS G_CDS: -6.88 Total: -129.31 kcal Atomic # 8 Polarization: -34.43 SS G_CDS: -0.99 Total: -35.42 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -79.25 2.13 -77.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032628947.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.552 kcal (2) G-P(sol) polarization free energy of solvation -79.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.122 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds