Wall clock time and date at job start Tue Mar 31 2020 11:31:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34777 * 120.00189 * 2 1 4 4 O 1.21549 * 120.00601 * 176.02770 * 3 2 1 5 5 C 1.47867 * 119.99740 * 356.03387 * 3 2 1 6 6 C 1.39708 * 120.07338 * 221.47898 * 5 3 2 7 7 C 1.38050 * 120.14391 * 179.76656 * 6 5 3 8 8 C 1.38104 * 120.29831 * 0.51233 * 7 6 5 9 9 C 1.39673 * 120.14308 * 359.74634 * 8 7 6 10 10 C 1.47855 * 120.07390 * 179.97438 * 9 8 7 11 11 N 1.34780 * 119.99971 * 0.02562 * 10 9 8 12 12 O 1.21546 * 119.99808 * 180.02562 * 10 9 8 13 13 C 1.39293 * 120.07198 * 41.75657 * 5 3 2 14 14 C 1.46494 * 120.00293 * 180.02562 * 2 1 3 15 15 H 1.09003 * 110.64345 * 181.68665 * 14 2 1 16 16 C 1.55160 * 110.87044 * 304.93551 * 14 2 1 17 17 C 1.55128 * 101.48399 * 82.76949 * 16 14 2 18 18 N 1.47420 * 104.72907 * 37.29338 * 17 16 14 19 19 C 1.36937 * 125.65366 * 155.81654 * 18 17 16 20 20 H 1.07993 * 120.00136 * 189.65264 * 19 18 17 21 21 C 1.38811 * 119.99732 * 9.65952 * 19 18 17 22 22 N 1.31611 * 119.99944 * 205.47336 * 21 19 18 23 23 Si 1.86803 * 119.99885 * 25.47269 * 21 19 18 24 24 H 1.48498 * 109.47338 * 270.00164 * 23 21 19 25 25 H 1.48505 * 109.47307 * 30.00228 * 23 21 19 26 26 H 1.48504 * 109.46975 * 150.00084 * 23 21 19 27 27 C 1.47029 * 108.69787 * 335.55541 * 18 17 16 28 28 H 1.08994 * 109.46553 * 269.84457 * 1 2 3 29 29 H 1.09000 * 109.46977 * 29.84282 * 1 2 3 30 30 H 1.08994 * 109.46839 * 149.84601 * 1 2 3 31 31 H 1.07998 * 119.92797 * 359.97438 * 6 5 3 32 32 H 1.07996 * 119.85317 * 180.25641 * 7 6 5 33 33 H 1.07998 * 119.93265 * 179.71971 * 8 7 6 34 34 H 0.96995 * 120.00090 * 359.97438 * 11 10 9 35 35 H 0.97000 * 119.99787 * 180.02562 * 11 10 9 36 36 H 1.08001 * 120.15026 * 0.02562 * 13 5 3 37 37 H 1.08998 * 111.00121 * 200.99954 * 16 14 2 38 38 H 1.08990 * 111.00727 * 324.81748 * 16 14 2 39 39 H 1.09008 * 110.49328 * 278.45378 * 17 16 14 40 40 H 1.09002 * 110.34497 * 156.06194 * 17 16 14 41 41 H 0.97001 * 120.00211 * 354.95741 * 22 21 19 42 42 H 1.09000 * 109.87843 * 120.70753 * 27 18 17 43 43 H 1.09001 * 109.88192 * 241.86302 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3522 1.1685 0.0729 5 6 1.4023 2.4462 -0.0886 6 6 1.8849 3.4775 -0.8981 7 6 1.1957 4.6705 -0.9856 8 6 0.0315 4.8569 -0.2665 9 6 -0.4592 3.8360 0.5507 10 6 -1.7055 4.0375 1.3203 11 7 -2.3697 5.2071 1.2333 12 8 -2.1311 3.1483 2.0314 13 6 0.2286 2.6275 0.6394 14 6 2.1976 -1.2686 -0.0006 15 1 3.2727 -1.0916 0.0295 16 6 1.7550 -2.1630 1.1876 17 6 0.4730 -2.8236 0.6161 18 7 0.7776 -3.0647 -0.8060 19 6 0.1853 -4.0101 -1.6001 20 1 0.5824 -4.2154 -2.5831 21 6 -0.9258 -4.7044 -1.1414 22 7 -1.1977 -5.9003 -1.6189 23 14 -2.0351 -3.9412 0.1534 24 1 -1.5503 -4.3187 1.5054 25 1 -2.0134 -2.4628 0.0148 26 1 -3.4234 -4.4353 -0.0305 27 6 1.8183 -2.1176 -1.2322 28 1 -0.3632 -0.0028 1.0276 29 1 -0.3633 0.8914 -0.5114 30 1 -0.3633 -0.8886 -0.5162 31 1 2.7974 3.3400 -1.4592 32 1 1.5709 5.4630 -1.6160 33 1 -0.5005 5.7942 -0.3359 34 1 -2.0299 5.9167 0.6661 35 1 -3.1871 5.3393 1.7385 36 1 -0.1462 1.8353 1.2704 37 1 2.5142 -2.9105 1.4178 38 1 1.5243 -1.5601 2.0657 39 1 -0.3788 -2.1503 0.7128 40 1 0.2726 -3.7659 1.1261 41 1 -0.6654 -6.2662 -2.3426 42 1 2.6917 -2.6629 -1.5899 43 1 1.4321 -1.4732 -2.0220 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033207622.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:51 Heat of formation + Delta-G solvation = 2.962174 kcal Electronic energy + Delta-G solvation = -26927.669869 eV Core-core repulsion = 23167.338255 eV Total energy + Delta-G solvation = -3760.331614 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.87388 -39.85989 -38.40541 -37.46363 -34.75161 -34.20864 -32.52272 -31.43309 -31.32926 -29.45905 -28.55433 -26.60005 -24.71550 -24.20133 -23.24471 -21.88195 -20.84441 -20.23097 -19.16986 -18.23884 -17.55574 -17.46134 -16.74414 -16.42573 -16.22597 -15.56351 -15.12855 -15.07471 -14.84616 -14.48056 -14.24089 -14.10710 -13.53575 -13.44876 -13.05400 -12.86875 -12.75340 -12.25713 -12.18503 -12.02376 -11.82738 -11.58266 -11.24020 -11.11084 -10.95851 -10.78988 -10.45156 -10.10340 -10.03098 -9.80491 -9.59048 -9.38329 -9.29415 -9.23803 -8.52382 -8.47703 -7.08566 -6.33260 -3.19021 0.37189 0.74890 2.33903 2.79004 2.99402 3.11982 3.41481 3.48816 3.52735 3.65337 4.22862 4.34315 4.47410 4.58884 4.60468 4.83611 4.98440 4.99831 5.12337 5.22448 5.28385 5.32380 5.46608 5.48097 5.61950 5.67414 5.77609 5.87804 5.89400 5.92945 6.00471 6.06231 6.26508 6.30600 6.33209 6.41575 6.52899 6.55646 6.73686 6.83131 6.90667 7.45274 7.69144 7.86894 8.13662 8.33781 9.03790 9.58677 10.25022 11.15925 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014840 B = 0.004127 C = 0.003502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1886.386636 B = 6783.400430 C = 7994.101800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.587 5.587 3 C 0.558 3.442 4 O -0.540 6.540 5 C -0.129 4.129 6 C -0.039 4.039 7 C -0.133 4.133 8 C -0.069 4.069 9 C -0.149 4.149 10 C 0.564 3.436 11 N -0.852 5.852 12 O -0.532 6.532 13 C -0.030 4.030 14 C 0.125 3.875 15 H 0.108 0.892 16 C -0.139 4.139 17 C 0.094 3.906 18 N -0.607 5.607 19 C -0.329 4.329 20 H 0.076 0.924 21 C -0.019 4.019 22 N -0.920 5.920 23 Si 1.063 2.937 24 H -0.294 1.294 25 H -0.286 1.286 26 H -0.299 1.299 27 C 0.128 3.872 28 H 0.061 0.939 29 H 0.070 0.930 30 H 0.101 0.899 31 H 0.138 0.862 32 H 0.137 0.863 33 H 0.130 0.870 34 H 0.400 0.600 35 H 0.406 0.594 36 H 0.149 0.851 37 H 0.083 0.917 38 H 0.070 0.930 39 H 0.038 0.962 40 H 0.062 0.938 41 H 0.263 0.737 42 H 0.041 0.959 43 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.838 26.133 3.554 26.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.318 5.318 3 C 0.346 3.654 4 O -0.418 6.418 5 C -0.132 4.132 6 C -0.058 4.058 7 C -0.150 4.150 8 C -0.088 4.088 9 C -0.152 4.152 10 C 0.350 3.650 11 N -0.416 5.416 12 O -0.409 6.409 13 C -0.049 4.049 14 C 0.022 3.978 15 H 0.126 0.874 16 C -0.178 4.178 17 C -0.031 4.031 18 N -0.335 5.335 19 C -0.456 4.456 20 H 0.094 0.906 21 C -0.220 4.220 22 N -0.561 5.561 23 Si 0.895 3.105 24 H -0.222 1.222 25 H -0.213 1.213 26 H -0.227 1.227 27 C 0.001 3.999 28 H 0.079 0.921 29 H 0.088 0.912 30 H 0.119 0.881 31 H 0.156 0.844 32 H 0.155 0.845 33 H 0.147 0.853 34 H 0.230 0.770 35 H 0.237 0.763 36 H 0.167 0.833 37 H 0.101 0.899 38 H 0.089 0.911 39 H 0.056 0.944 40 H 0.080 0.920 41 H 0.073 0.927 42 H 0.058 0.942 43 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 0.974 25.053 4.859 25.538 hybrid contribution 0.988 0.805 -1.136 1.707 sum 1.962 25.858 3.724 26.198 Atomic orbital electron populations 1.22453 0.79074 1.04784 1.02175 1.47745 1.07395 1.05430 1.71223 1.18246 0.87002 0.83410 0.76777 1.90764 1.13299 1.87189 1.50569 1.19949 0.96470 0.95560 1.01182 1.21437 0.98402 0.91336 0.94672 1.21060 0.95560 0.97773 1.00653 1.21425 0.95627 0.97616 0.94084 1.19791 0.97335 0.95984 1.02085 1.18220 0.83616 0.82195 0.80969 1.43725 1.29823 1.16791 1.51276 1.90863 1.68109 1.42054 1.39861 1.21750 0.91386 0.96428 0.95376 1.22200 0.96963 0.81876 0.96791 0.87387 1.23112 0.99497 0.98549 0.96653 1.22308 0.95237 0.98960 0.86585 1.44837 1.44275 1.38784 1.05600 1.20016 1.10927 1.13965 1.00692 0.90627 1.25801 0.97230 0.95207 1.03749 1.70897 1.46231 1.12129 1.26880 0.83896 0.76299 0.75031 0.75269 1.22168 1.21304 1.22711 1.21658 0.93166 0.91069 0.93993 0.92078 0.91161 0.88070 0.84442 0.84539 0.85263 0.77047 0.76266 0.83325 0.89874 0.91117 0.94433 0.92045 0.92683 0.94156 0.94987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.90 7.02 59.85 0.42 1.32 16 2 N -0.59 -9.51 2.83 -172.95 -0.49 -10.00 16 3 C 0.56 8.76 7.32 -12.32 -0.09 8.67 16 4 O -0.54 -9.79 16.32 5.32 0.09 -9.71 16 5 C -0.13 -1.63 5.14 -105.01 -0.54 -2.17 16 6 C -0.04 -0.40 9.64 -39.10 -0.38 -0.78 16 7 C -0.13 -0.96 10.02 -39.70 -0.40 -1.35 16 8 C -0.07 -0.47 9.54 -39.10 -0.37 -0.84 16 9 C -0.15 -1.47 5.87 -105.02 -0.62 -2.09 16 10 C 0.56 5.88 8.05 -12.32 -0.10 5.78 16 11 N -0.85 -4.82 8.82 30.53 0.27 -4.55 16 12 O -0.53 -7.90 17.18 5.33 0.09 -7.81 16 13 C -0.03 -0.36 7.07 -38.78 -0.27 -0.64 16 14 C 0.12 2.18 3.57 -66.10 -0.24 1.94 16 15 H 0.11 1.85 6.99 -51.93 -0.36 1.49 16 16 C -0.14 -2.41 6.55 -24.46 -0.16 -2.57 16 17 C 0.09 2.00 3.81 -2.41 -0.01 1.99 16 18 N -0.61 -14.58 2.88 -169.93 -0.49 -15.07 16 19 C -0.33 -9.31 10.45 -15.06 -0.16 -9.46 16 20 H 0.08 2.27 8.06 -52.49 -0.42 1.85 16 21 C -0.02 -0.57 5.42 -17.43 -0.09 -0.66 16 22 N -0.92 -28.76 13.70 55.49 0.76 -28.00 16 23 Si 1.06 26.41 24.69 -169.99 -4.20 22.22 16 24 H -0.29 -6.97 6.53 56.52 0.37 -6.60 16 25 H -0.29 -6.53 5.96 56.52 0.34 -6.19 16 26 H -0.30 -7.60 7.11 56.52 0.40 -7.20 16 27 C 0.13 2.60 6.24 -3.06 -0.02 2.58 16 28 H 0.06 0.90 7.03 -51.93 -0.37 0.53 16 29 H 0.07 0.97 5.62 -51.93 -0.29 0.68 16 30 H 0.10 1.90 5.02 -51.93 -0.26 1.64 16 31 H 0.14 1.31 8.06 -52.49 -0.42 0.89 16 32 H 0.14 0.58 8.06 -52.49 -0.42 0.16 16 33 H 0.13 0.38 6.39 -52.49 -0.34 0.05 16 34 H 0.40 0.97 6.85 -40.82 -0.28 0.69 16 35 H 0.41 1.86 8.93 -40.82 -0.36 1.50 16 36 H 0.15 1.95 5.31 -52.49 -0.28 1.67 16 37 H 0.08 1.38 8.14 -51.93 -0.42 0.95 16 38 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.04 0.80 3.10 -51.92 -0.16 0.64 16 40 H 0.06 1.42 5.91 -51.93 -0.31 1.11 16 41 H 0.26 8.13 8.73 -40.82 -0.36 7.78 16 42 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 43 H 0.03 0.67 8.04 -51.93 -0.42 0.25 16 LS Contribution 338.26 15.07 5.10 5.10 Total: -1.00 -36.01 338.26 -7.10 -43.12 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -5.21 Total: 2.97 kcal Atomic # 6 Polarization: 4.75 SS G_CDS: -3.02 Total: 1.72 kcal Atomic # 7 Polarization: -57.66 SS G_CDS: 0.05 Total: -57.61 kcal Atomic # 8 Polarization: -17.69 SS G_CDS: 0.18 Total: -17.51 kcal Atomic # 14 Polarization: 26.41 SS G_CDS: -4.20 Total: 22.22 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -36.01 -7.10 -43.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033207622.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.078 kcal (2) G-P(sol) polarization free energy of solvation -36.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.115 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds