Wall clock time and date at job start Tue Mar 31 2020 11:31:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34777 * 120.00189 * 2 1 4 4 O 1.21549 * 120.00601 * 176.02770 * 3 2 1 5 5 C 1.47867 * 119.99740 * 356.03387 * 3 2 1 6 6 C 1.39708 * 120.07338 * 221.47898 * 5 3 2 7 7 C 1.38050 * 120.14391 * 179.76656 * 6 5 3 8 8 C 1.38104 * 120.29831 * 0.51233 * 7 6 5 9 9 C 1.39673 * 120.14308 * 359.74634 * 8 7 6 10 10 C 1.47855 * 120.07390 * 179.97438 * 9 8 7 11 11 N 1.34780 * 119.99971 * 0.02562 * 10 9 8 12 12 O 1.21546 * 119.99808 * 180.02562 * 10 9 8 13 13 C 1.39293 * 120.07198 * 41.75657 * 5 3 2 14 14 C 1.46494 * 120.00293 * 180.02562 * 2 1 3 15 15 H 1.09003 * 110.64345 * 181.68665 * 14 2 1 16 16 C 1.55160 * 110.87044 * 304.93551 * 14 2 1 17 17 C 1.55128 * 101.48399 * 82.76949 * 16 14 2 18 18 N 1.47420 * 104.72907 * 37.29338 * 17 16 14 19 19 C 1.36937 * 125.65366 * 155.81654 * 18 17 16 20 20 H 1.07993 * 120.00136 * 189.65264 * 19 18 17 21 21 C 1.38811 * 119.99732 * 9.65952 * 19 18 17 22 22 N 1.31611 * 119.99944 * 205.47336 * 21 19 18 23 23 Si 1.86803 * 119.99885 * 25.47269 * 21 19 18 24 24 H 1.48498 * 109.47338 * 270.00164 * 23 21 19 25 25 H 1.48505 * 109.47307 * 30.00228 * 23 21 19 26 26 H 1.48504 * 109.46975 * 150.00084 * 23 21 19 27 27 C 1.47029 * 108.69787 * 335.55541 * 18 17 16 28 28 H 1.08994 * 109.46553 * 269.84457 * 1 2 3 29 29 H 1.09000 * 109.46977 * 29.84282 * 1 2 3 30 30 H 1.08994 * 109.46839 * 149.84601 * 1 2 3 31 31 H 1.07998 * 119.92797 * 359.97438 * 6 5 3 32 32 H 1.07996 * 119.85317 * 180.25641 * 7 6 5 33 33 H 1.07998 * 119.93265 * 179.71971 * 8 7 6 34 34 H 0.96995 * 120.00090 * 359.97438 * 11 10 9 35 35 H 0.97000 * 119.99787 * 180.02562 * 11 10 9 36 36 H 1.08001 * 120.15026 * 0.02562 * 13 5 3 37 37 H 1.08998 * 111.00121 * 200.99954 * 16 14 2 38 38 H 1.08990 * 111.00727 * 324.81748 * 16 14 2 39 39 H 1.09008 * 110.49328 * 278.45378 * 17 16 14 40 40 H 1.09002 * 110.34497 * 156.06194 * 17 16 14 41 41 H 0.97001 * 120.00211 * 354.95741 * 22 21 19 42 42 H 1.09000 * 109.87843 * 120.70753 * 27 18 17 43 43 H 1.09001 * 109.88192 * 241.86302 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3522 1.1685 0.0729 5 6 1.4023 2.4462 -0.0886 6 6 1.8849 3.4775 -0.8981 7 6 1.1957 4.6705 -0.9856 8 6 0.0315 4.8569 -0.2665 9 6 -0.4592 3.8360 0.5507 10 6 -1.7055 4.0375 1.3203 11 7 -2.3697 5.2071 1.2333 12 8 -2.1311 3.1483 2.0314 13 6 0.2286 2.6275 0.6394 14 6 2.1976 -1.2686 -0.0006 15 1 3.2727 -1.0916 0.0295 16 6 1.7550 -2.1630 1.1876 17 6 0.4730 -2.8236 0.6161 18 7 0.7776 -3.0647 -0.8060 19 6 0.1853 -4.0101 -1.6001 20 1 0.5824 -4.2154 -2.5831 21 6 -0.9258 -4.7044 -1.1414 22 7 -1.1977 -5.9003 -1.6189 23 14 -2.0351 -3.9412 0.1534 24 1 -1.5503 -4.3187 1.5054 25 1 -2.0134 -2.4628 0.0148 26 1 -3.4234 -4.4353 -0.0305 27 6 1.8183 -2.1176 -1.2322 28 1 -0.3632 -0.0028 1.0276 29 1 -0.3633 0.8914 -0.5114 30 1 -0.3633 -0.8886 -0.5162 31 1 2.7974 3.3400 -1.4592 32 1 1.5709 5.4630 -1.6160 33 1 -0.5005 5.7942 -0.3359 34 1 -2.0299 5.9167 0.6661 35 1 -3.1871 5.3393 1.7385 36 1 -0.1462 1.8353 1.2704 37 1 2.5142 -2.9105 1.4178 38 1 1.5243 -1.5601 2.0657 39 1 -0.3788 -2.1503 0.7128 40 1 0.2726 -3.7659 1.1261 41 1 -0.6654 -6.2662 -2.3426 42 1 2.6917 -2.6629 -1.5899 43 1 1.4321 -1.4732 -2.0220 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033207622.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:50 Heat of formation + Delta-G solvation = -25.206198 kcal Electronic energy + Delta-G solvation = -26928.891341 eV Core-core repulsion = 23167.338255 eV Total energy + Delta-G solvation = -3761.553086 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.90057 -40.85324 -39.57640 -38.63992 -36.23465 -34.96316 -34.38626 -32.46388 -32.13496 -31.09246 -30.10175 -27.96383 -26.02815 -25.27496 -24.48645 -22.98862 -22.40062 -21.35734 -20.36138 -19.56671 -19.08783 -18.52363 -17.80523 -17.38390 -17.15913 -16.80574 -16.65177 -16.17215 -15.84399 -15.58729 -15.49933 -15.27171 -14.99054 -14.87107 -14.36063 -14.24566 -13.83191 -13.60000 -13.52299 -13.26622 -13.05615 -12.95888 -12.85825 -12.57702 -12.46102 -12.34348 -11.78301 -11.59435 -11.29844 -11.24048 -10.98334 -10.74690 -10.66825 -10.13442 -10.03736 -9.83260 -9.15569 -8.65202 -5.43681 -0.35350 -0.01874 1.39959 1.43574 1.50966 1.67262 1.74072 1.92843 2.46809 2.51703 2.76564 3.03083 3.24560 3.35731 3.63926 3.72870 3.76763 3.81019 4.00783 4.08344 4.10940 4.14101 4.32654 4.34589 4.40498 4.44059 4.59527 4.68444 4.74157 4.81904 4.84754 4.91487 4.93933 5.09563 5.11297 5.19734 5.25348 5.43929 5.54918 5.69095 5.86608 6.08935 6.21204 6.40433 6.81178 6.91439 7.27445 7.45126 8.10706 8.84892 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014840 B = 0.004127 C = 0.003502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1886.386636 B = 6783.400430 C = 7994.101800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.591 5.591 3 C 0.559 3.441 4 O -0.570 6.570 5 C -0.152 4.152 6 C -0.047 4.047 7 C -0.119 4.119 8 C -0.046 4.046 9 C -0.158 4.158 10 C 0.561 3.439 11 N -0.826 5.826 12 O -0.587 6.587 13 C -0.044 4.044 14 C 0.136 3.864 15 H 0.115 0.885 16 C -0.126 4.126 17 C 0.089 3.911 18 N -0.622 5.622 19 C -0.317 4.317 20 H 0.043 0.957 21 C -0.072 4.072 22 N -0.956 5.956 23 Si 1.098 2.902 24 H -0.274 1.274 25 H -0.258 1.258 26 H -0.307 1.307 27 C 0.129 3.871 28 H 0.071 0.929 29 H 0.086 0.914 30 H 0.070 0.930 31 H 0.139 0.861 32 H 0.177 0.823 33 H 0.178 0.822 34 H 0.419 0.581 35 H 0.414 0.586 36 H 0.131 0.869 37 H 0.092 0.908 38 H 0.095 0.905 39 H 0.048 0.952 40 H 0.045 0.955 41 H 0.248 0.752 42 H 0.037 0.963 43 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.632 30.844 4.400 31.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.321 5.321 3 C 0.349 3.651 4 O -0.450 6.450 5 C -0.155 4.155 6 C -0.066 4.066 7 C -0.137 4.137 8 C -0.064 4.064 9 C -0.161 4.161 10 C 0.347 3.653 11 N -0.391 5.391 12 O -0.468 6.468 13 C -0.064 4.064 14 C 0.033 3.967 15 H 0.133 0.867 16 C -0.165 4.165 17 C -0.035 4.035 18 N -0.350 5.350 19 C -0.446 4.446 20 H 0.061 0.939 21 C -0.266 4.266 22 N -0.600 5.600 23 Si 0.925 3.075 24 H -0.201 1.201 25 H -0.183 1.183 26 H -0.236 1.236 27 C 0.003 3.997 28 H 0.089 0.911 29 H 0.105 0.895 30 H 0.089 0.911 31 H 0.156 0.844 32 H 0.194 0.806 33 H 0.195 0.805 34 H 0.252 0.748 35 H 0.246 0.754 36 H 0.149 0.851 37 H 0.111 0.889 38 H 0.114 0.886 39 H 0.065 0.935 40 H 0.063 0.937 41 H 0.058 0.942 42 H 0.055 0.945 43 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 0.791 29.861 5.693 30.409 hybrid contribution 1.124 -0.506 -1.517 1.955 sum 1.915 29.355 4.176 29.712 Atomic orbital electron populations 1.22377 0.78699 1.03999 1.02597 1.47759 1.07559 1.05258 1.71527 1.18743 0.86782 0.84129 0.75447 1.90735 1.14645 1.87704 1.51926 1.19734 0.97246 0.94817 1.03671 1.21645 0.98818 0.91878 0.94218 1.21498 0.94825 0.97237 1.00117 1.21932 0.95007 0.98168 0.91327 1.19870 0.97212 0.96154 1.02906 1.18381 0.83830 0.82679 0.80432 1.43526 1.29318 1.15685 1.50531 1.90841 1.69522 1.44120 1.42326 1.21605 0.91700 0.97338 0.95742 1.21972 0.97445 0.82218 0.95108 0.86708 1.23069 0.97610 0.98667 0.97159 1.22434 0.97616 0.98649 0.84843 1.44841 1.44583 1.38843 1.06740 1.19892 1.10510 1.14281 0.99891 0.93885 1.27003 0.98676 0.94955 1.05999 1.71018 1.47072 1.13915 1.27983 0.83470 0.73966 0.75965 0.74140 1.20059 1.18263 1.23597 1.21715 0.91835 0.90753 0.95441 0.91076 0.89520 0.91105 0.84357 0.80564 0.80506 0.74813 0.75358 0.85131 0.88913 0.88628 0.93477 0.93686 0.94226 0.94526 0.95581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.00 7.02 127.77 0.90 2.90 16 2 N -0.59 -18.68 2.83 -819.35 -2.31 -21.00 16 3 C 0.56 17.15 7.32 86.79 0.64 17.78 16 4 O -0.57 -20.37 16.32 -3.87 -0.06 -20.43 16 5 C -0.15 -3.63 5.14 -20.12 -0.10 -3.73 16 6 C -0.05 -0.82 9.64 22.58 0.22 -0.60 16 7 C -0.12 -1.13 10.02 22.19 0.22 -0.91 16 8 C -0.05 -0.39 9.54 22.58 0.22 -0.17 16 9 C -0.16 -2.67 5.87 -20.12 -0.12 -2.79 16 10 C 0.56 10.33 8.05 86.79 0.70 11.03 16 11 N -0.83 -6.24 8.82 -175.60 -1.55 -7.79 16 12 O -0.59 -16.96 17.18 -3.86 -0.07 -17.03 16 13 C -0.04 -1.01 7.07 22.79 0.16 -0.85 16 14 C 0.14 4.66 3.57 46.18 0.16 4.82 16 15 H 0.12 3.83 6.99 -2.39 -0.02 3.82 16 16 C -0.13 -4.18 6.55 32.06 0.21 -3.97 16 17 C 0.09 3.70 3.81 86.93 0.33 4.03 16 18 N -0.62 -30.22 2.88 -691.54 -1.99 -32.21 16 19 C -0.32 -18.56 10.45 84.03 0.88 -17.68 16 20 H 0.04 2.73 8.06 -2.91 -0.02 2.71 16 21 C -0.07 -4.33 5.42 84.86 0.46 -3.87 16 22 N -0.96 -61.98 13.70 21.65 0.30 -61.68 16 23 Si 1.10 53.62 24.69 68.60 1.69 55.32 16 24 H -0.27 -12.46 6.53 99.48 0.65 -11.81 16 25 H -0.26 -11.23 5.96 99.48 0.59 -10.64 16 26 H -0.31 -15.36 7.11 99.48 0.71 -14.66 16 27 C 0.13 5.29 6.24 86.73 0.54 5.83 16 28 H 0.07 2.01 7.03 -2.39 -0.02 2.00 16 29 H 0.09 2.34 5.62 -2.39 -0.01 2.32 16 30 H 0.07 2.61 5.02 -2.39 -0.01 2.60 16 31 H 0.14 2.36 8.06 -2.91 -0.02 2.33 16 32 H 0.18 0.34 8.06 -2.91 -0.02 0.32 16 33 H 0.18 -0.24 6.39 -2.91 -0.02 -0.26 16 34 H 0.42 -0.17 6.85 -92.71 -0.64 -0.80 16 35 H 0.41 2.45 8.93 -92.71 -0.83 1.62 16 36 H 0.13 3.38 5.31 -2.91 -0.02 3.37 16 37 H 0.09 2.91 8.14 -2.39 -0.02 2.89 16 38 H 0.10 2.74 8.14 -2.39 -0.02 2.72 16 39 H 0.05 1.92 3.10 -2.38 -0.01 1.91 16 40 H 0.05 2.04 5.91 -2.39 -0.01 2.02 16 41 H 0.25 16.20 8.73 -92.71 -0.81 15.39 16 42 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 43 H 0.03 1.11 8.04 -2.39 -0.02 1.09 16 Total: -1.00 -83.38 338.26 0.83 -82.55 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: -0.59 Total: 10.46 kcal Atomic # 6 Polarization: 6.42 SS G_CDS: 5.41 Total: 11.83 kcal Atomic # 7 Polarization: -117.12 SS G_CDS: -5.56 Total: -122.68 kcal Atomic # 8 Polarization: -37.34 SS G_CDS: -0.13 Total: -37.47 kcal Atomic # 14 Polarization: 53.62 SS G_CDS: 1.69 Total: 55.32 kcal Total: -83.38 0.83 -82.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033207622.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.341 kcal (2) G-P(sol) polarization free energy of solvation -83.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds