Wall clock time and date at job start Tue Mar 31 2020 11:43:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35748 * 116.99988 * 2 1 4 4 C 1.39221 * 120.81026 * 359.97272 * 3 2 1 5 5 C 1.38314 * 119.28492 * 180.02562 * 4 3 2 6 6 N 1.31613 * 120.96972 * 0.02562 * 5 4 3 7 7 C 1.32794 * 121.78509 * 359.97438 * 6 5 4 8 8 C 1.48188 * 119.69803 * 179.97438 * 7 6 5 9 9 O 1.21506 * 119.99844 * 180.02562 * 8 7 6 10 10 N 1.34781 * 119.99724 * 0.02562 * 8 7 6 11 11 C 1.46667 * 125.33405 * 180.02562 * 10 8 7 12 12 C 1.53719 * 107.94266 * 180.54232 * 11 10 8 13 13 H 1.09000 * 112.56740 * 139.71486 * 12 11 10 14 14 C 1.53690 * 109.34378 * 266.24987 * 12 11 10 15 15 N 1.46633 * 108.01236 * 127.55416 * 14 12 11 16 16 C 1.36941 * 125.32853 * 180.82045 * 15 14 12 17 17 H 1.08004 * 119.99475 * 180.02562 * 16 15 14 18 18 C 1.38807 * 120.00434 * 0.02562 * 16 15 14 19 19 N 1.31620 * 119.99610 * 359.97438 * 18 16 15 20 20 Si 1.86789 * 120.00383 * 180.02562 * 18 16 15 21 21 H 1.48509 * 109.47190 * 59.99954 * 20 18 16 22 22 H 1.48504 * 109.47296 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47604 * 300.00194 * 20 18 16 24 24 C 1.46743 * 109.34272 * 0.83999 * 15 14 12 25 25 C 1.53929 * 106.71903 * 341.65759 * 24 15 14 26 26 H 1.09002 * 113.01490 * 150.83126 * 25 24 15 27 27 C 1.46773 * 125.34123 * 359.68643 * 10 8 7 28 28 C 1.39103 * 120.60374 * 359.97438 * 7 6 5 29 29 H 1.08998 * 109.47306 * 299.99848 * 1 2 3 30 30 H 1.09001 * 109.47269 * 60.00700 * 1 2 3 31 31 H 1.09003 * 109.46961 * 180.02562 * 1 2 3 32 32 H 1.07997 * 120.35872 * 0.02562 * 4 3 2 33 33 H 1.07994 * 119.51013 * 180.02562 * 5 4 3 34 34 H 1.08998 * 109.77001 * 300.16142 * 11 10 8 35 35 H 1.08998 * 109.77533 * 60.91858 * 11 10 8 36 36 H 1.08998 * 109.76410 * 247.20106 * 14 12 11 37 37 H 1.09008 * 109.75891 * 7.91395 * 14 12 11 38 38 H 0.97004 * 120.00384 * 180.02562 * 19 18 16 39 39 H 1.09004 * 110.01146 * 222.34852 * 24 15 14 40 40 H 1.08995 * 110.01034 * 100.97620 * 24 15 14 41 41 H 1.08999 * 110.03105 * 280.77838 * 27 10 8 42 42 H 1.09000 * 110.02539 * 42.19574 * 27 10 8 43 43 H 1.07999 * 120.50615 * 179.97438 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2095 0.0000 4 6 1.3036 2.3877 -0.0006 5 6 1.9641 3.6030 -0.0011 6 7 3.2790 3.6591 -0.0016 7 6 4.0260 2.5612 -0.0011 8 6 5.5033 2.6783 -0.0022 9 8 6.1920 1.6773 -0.0022 10 7 6.0828 3.8951 -0.0032 11 6 7.5277 4.1465 -0.0049 12 6 7.7437 5.6684 0.0082 13 1 8.5644 5.9688 0.6595 14 6 7.9051 6.1721 -1.4348 15 7 6.9555 7.2704 -1.6406 16 6 6.7903 7.9659 -2.8085 17 1 6.0630 8.7624 -2.8643 18 6 7.5575 7.6474 -3.9206 19 7 8.4442 6.6771 -3.8523 20 14 7.3325 8.5967 -5.5135 21 1 7.6215 10.0343 -5.2781 22 1 8.2643 8.0669 -6.5413 23 1 5.9335 8.4443 -5.9874 24 6 6.2104 7.5077 -0.3989 25 6 6.3737 6.2435 0.4641 26 1 6.3276 6.4487 1.5336 27 6 5.3669 5.1764 -0.0099 28 6 3.4345 1.3022 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 0.2242 2.3532 -0.0006 33 1 1.3924 4.5192 -0.0011 34 1 7.9803 3.7022 0.8816 35 1 7.9755 3.7182 -0.9017 36 1 8.9228 6.5312 -1.5882 37 1 7.6904 5.3635 -2.1336 38 1 8.9806 6.4547 -4.6293 39 1 5.1564 7.6731 -0.6222 40 1 6.6214 8.3715 0.1235 41 1 5.0218 5.4061 -1.0180 42 1 4.5196 5.1341 0.6745 43 1 4.0435 0.4103 0.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001048974665.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:02 Heat of formation + Delta-G solvation = -8.766837 kcal Electronic energy + Delta-G solvation = -26762.671609 eV Core-core repulsion = 23001.831387 eV Total energy + Delta-G solvation = -3760.840222 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.08489 -41.16743 -39.78610 -38.94600 -36.60498 -34.15466 -32.81308 -32.72046 -31.52546 -31.06594 -28.58693 -27.54313 -26.97122 -25.61741 -24.44923 -23.80359 -21.80384 -21.24362 -20.73190 -19.30066 -18.74033 -18.46822 -17.59089 -17.15111 -16.94548 -16.68232 -16.59787 -16.49412 -15.96006 -15.54853 -15.46285 -14.83643 -14.75713 -14.61954 -14.38247 -14.09916 -13.60797 -13.57310 -13.30332 -13.21311 -13.00571 -12.70812 -12.64573 -12.53392 -12.30253 -12.01554 -11.86770 -11.83299 -11.57624 -11.41595 -11.29359 -10.66455 -10.45163 -10.39474 -9.99889 -9.64021 -8.83586 -7.81980 -5.16668 -0.49014 0.20308 1.45934 1.49351 1.55501 1.58823 1.72350 2.22528 2.51805 2.76228 2.99757 3.36293 3.43236 3.57824 3.65288 3.75224 3.88902 3.94886 3.97522 4.10378 4.33059 4.36741 4.38812 4.39218 4.48289 4.55350 4.68116 4.69732 4.75863 4.85564 4.89042 4.91688 4.99631 5.13724 5.17321 5.22170 5.44706 5.46536 5.51005 5.66453 5.79842 6.13900 6.24303 6.39287 6.66997 6.99368 7.14049 7.84095 8.45811 9.28046 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.016268 B = 0.003456 C = 0.003214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1720.806110 B = 8100.435240 C = 8709.736434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.326 6.326 3 C 0.160 3.840 4 C -0.223 4.223 5 C 0.133 3.867 6 N -0.492 5.492 7 C 0.103 3.897 8 C 0.571 3.429 9 O -0.575 6.575 10 N -0.588 5.588 11 C 0.121 3.879 12 C -0.112 4.112 13 H 0.119 0.881 14 C 0.199 3.801 15 N -0.623 5.623 16 C -0.236 4.236 17 H 0.087 0.913 18 C -0.070 4.070 19 N -0.953 5.953 20 Si 0.977 3.023 21 H -0.274 1.274 22 H -0.299 1.299 23 H -0.277 1.277 24 C 0.141 3.859 25 C -0.100 4.100 26 H 0.134 0.866 27 C 0.132 3.868 28 C -0.160 4.160 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.122 0.878 32 H 0.185 0.815 33 H 0.203 0.797 34 H 0.084 0.916 35 H 0.044 0.956 36 H 0.006 0.994 37 H 0.005 0.995 38 H 0.243 0.757 39 H 0.047 0.953 40 H 0.032 0.968 41 H 0.044 0.956 42 H 0.116 0.884 43 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.062 -8.183 13.135 24.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.238 6.238 3 C 0.106 3.894 4 C -0.243 4.243 5 C -0.026 4.026 6 N -0.207 5.207 7 C -0.033 4.033 8 C 0.359 3.641 9 O -0.456 6.456 10 N -0.318 5.318 11 C -0.001 4.001 12 C -0.132 4.132 13 H 0.137 0.863 14 C 0.073 3.927 15 N -0.349 5.349 16 C -0.365 4.365 17 H 0.104 0.896 18 C -0.263 4.263 19 N -0.603 5.603 20 Si 0.805 3.195 21 H -0.200 1.200 22 H -0.226 1.226 23 H -0.204 1.204 24 C 0.016 3.984 25 C -0.119 4.119 26 H 0.151 0.849 27 C 0.010 3.990 28 C -0.183 4.183 29 H 0.096 0.904 30 H 0.092 0.908 31 H 0.140 0.860 32 H 0.202 0.798 33 H 0.220 0.780 34 H 0.102 0.898 35 H 0.063 0.937 36 H 0.024 0.976 37 H 0.023 0.977 38 H 0.053 0.947 39 H 0.066 0.934 40 H 0.050 0.950 41 H 0.063 0.937 42 H 0.133 0.867 43 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -18.149 -8.192 12.932 23.743 hybrid contribution 0.044 -0.519 -1.530 1.616 sum -18.104 -8.711 11.402 23.101 Atomic orbital electron populations 1.23551 0.75003 1.06343 1.03237 1.86088 1.24635 1.25531 1.87524 1.19201 0.91265 0.86207 0.92682 1.22806 1.03605 0.91665 1.06247 1.23369 0.88804 0.99251 0.91126 1.67880 1.08729 1.30104 1.14023 1.20498 0.92798 0.89764 1.00276 1.17927 0.87103 0.81989 0.77086 1.90728 1.64675 1.36863 1.53310 1.48181 1.08098 1.06285 1.69230 1.21820 0.80675 0.96214 1.01436 1.23018 0.99410 0.92664 0.98062 0.86344 1.20749 0.91996 0.89408 0.90525 1.44501 1.42990 1.38679 1.08750 1.19429 1.16993 1.11877 0.88248 0.89567 1.25652 0.99004 1.00070 1.01524 1.70207 1.27275 1.33277 1.29506 0.85171 0.77102 0.78153 0.79039 1.20001 1.22587 1.20351 1.21364 0.95657 0.95138 0.86203 1.23132 0.93232 0.94566 1.00980 0.84866 1.22279 0.95215 0.79832 1.01637 1.21298 0.93547 0.98626 1.04808 0.90393 0.90836 0.86031 0.79758 0.78019 0.89755 0.93733 0.97579 0.97711 0.94735 0.93449 0.95008 0.93736 0.86666 0.84249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.09 9.84 113.37 1.12 1.20 16 2 O -0.33 -5.91 10.51 -90.73 -0.95 -6.86 16 3 C 0.16 3.35 6.73 22.75 0.15 3.51 16 4 C -0.22 -3.29 9.12 22.52 0.21 -3.08 16 5 C 0.13 2.36 11.17 84.74 0.95 3.31 16 6 N -0.49 -13.19 6.66 -185.14 -1.23 -14.42 16 7 C 0.10 3.23 6.72 41.85 0.28 3.51 16 8 C 0.57 21.66 7.83 86.89 0.68 22.34 16 9 O -0.58 -24.77 16.63 -3.73 -0.06 -24.84 16 10 N -0.59 -21.65 3.31 -820.02 -2.72 -24.37 16 11 C 0.12 4.47 6.23 86.59 0.54 5.01 16 12 C -0.11 -4.09 4.02 -9.49 -0.04 -4.12 16 13 H 0.12 3.70 8.14 -2.39 -0.02 3.68 16 14 C 0.20 9.95 4.75 86.59 0.41 10.36 16 15 N -0.62 -31.66 3.37 -697.89 -2.35 -34.01 16 16 C -0.24 -13.22 10.25 84.03 0.86 -12.36 16 17 H 0.09 4.54 7.83 -2.91 -0.02 4.51 16 18 C -0.07 -4.05 5.48 84.86 0.47 -3.58 16 19 N -0.95 -59.07 10.25 21.65 0.22 -58.85 16 20 Si 0.98 46.56 29.55 68.60 2.03 48.59 16 21 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 22 H -0.30 -14.56 7.11 99.48 0.71 -13.85 16 23 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 24 C 0.14 5.41 6.37 86.65 0.55 5.96 16 25 C -0.10 -3.15 4.19 -9.25 -0.04 -3.19 16 26 H 0.13 3.15 8.14 -2.39 -0.02 3.13 16 27 C 0.13 4.42 4.97 86.73 0.43 4.85 16 28 C -0.16 -4.50 9.60 22.72 0.22 -4.28 16 29 H 0.08 0.30 7.71 -2.39 -0.02 0.28 16 30 H 0.07 0.36 7.71 -2.39 -0.02 0.34 16 31 H 0.12 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.19 1.10 6.45 -2.91 -0.02 1.08 16 33 H 0.20 1.99 8.06 -2.91 -0.02 1.97 16 34 H 0.08 2.72 8.14 -2.39 -0.02 2.70 16 35 H 0.04 1.90 7.44 -2.39 -0.02 1.89 16 36 H 0.01 0.34 7.45 -2.39 -0.02 0.32 16 37 H 0.00 0.28 6.51 -2.38 -0.02 0.26 16 38 H 0.24 14.85 8.31 -92.71 -0.77 14.08 16 39 H 0.05 1.74 7.95 -2.39 -0.02 1.72 16 40 H 0.03 1.16 8.14 -2.39 -0.02 1.15 16 41 H 0.04 1.80 7.72 -2.39 -0.02 1.78 16 42 H 0.12 3.28 6.18 -2.39 -0.01 3.27 16 43 H 0.14 4.17 7.64 -2.91 -0.02 4.15 16 Total: -1.00 -78.92 346.51 2.74 -76.18 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: 1.03 Total: 9.15 kcal Atomic # 6 Polarization: 22.65 SS G_CDS: 6.78 Total: 29.43 kcal Atomic # 7 Polarization: -125.57 SS G_CDS: -6.08 Total: -131.65 kcal Atomic # 8 Polarization: -30.68 SS G_CDS: -1.02 Total: -31.70 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 2.03 Total: 48.59 kcal Total: -78.92 2.74 -76.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048974665.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.417 kcal (2) G-P(sol) polarization free energy of solvation -78.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds