Wall clock time and date at job start Tue Mar 31 2020 11:40:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35659 * 116.99964 * 2 1 4 4 C 1.39290 * 119.61644 * 180.02562 * 3 2 1 5 5 C 1.38331 * 119.30423 * 179.97438 * 4 3 2 6 6 C 1.38781 * 118.55913 * 359.97438 * 5 4 3 7 7 C 1.39126 * 119.19200 * 0.02562 * 6 5 4 8 8 C 1.48146 * 119.69155 * 179.97438 * 7 6 5 9 9 O 1.21514 * 120.00429 * 359.97438 * 8 7 6 10 10 N 1.34780 * 119.99962 * 179.97438 * 8 7 6 11 11 C 1.46744 * 125.32749 * 179.97438 * 10 8 7 12 12 C 1.53934 * 106.71783 * 161.66424 * 11 10 8 13 13 H 1.09000 * 113.01256 * 150.83147 * 12 11 10 14 14 C 1.54162 * 109.75329 * 278.27781 * 12 11 10 15 15 N 1.46774 * 106.52479 * 138.70009 * 14 12 11 16 16 C 1.36935 * 125.33842 * 161.35515 * 15 14 12 17 17 H 1.08000 * 120.00518 * 179.42267 * 16 15 14 18 18 C 1.38817 * 119.99990 * 359.68918 * 16 15 14 19 19 N 1.31617 * 119.99869 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99909 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47028 * 60.00888 * 20 18 16 22 22 H 1.48503 * 109.46851 * 180.02562 * 20 18 16 23 23 H 1.48492 * 109.47412 * 300.00497 * 20 18 16 24 24 C 1.46668 * 109.32539 * 341.09052 * 15 14 12 25 25 C 1.53730 * 107.94228 * 0.80889 * 24 15 14 26 26 H 1.08997 * 112.55938 * 139.72127 * 25 24 15 27 27 C 1.47175 * 125.25573 * 359.14521 * 10 8 7 28 28 N 1.31909 * 119.61829 * 0.25400 * 3 2 1 29 29 H 1.09005 * 109.47090 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47150 * 299.99799 * 1 2 3 31 31 H 1.08993 * 109.47219 * 60.00273 * 1 2 3 32 32 H 1.07994 * 120.34814 * 0.02562 * 4 3 2 33 33 H 1.08002 * 120.71854 * 180.02562 * 5 4 3 34 34 H 1.08002 * 120.40366 * 180.02562 * 6 5 4 35 35 H 1.08997 * 110.00923 * 42.35031 * 11 10 8 36 36 H 1.08995 * 110.04888 * 280.99928 * 11 10 8 37 37 H 1.08992 * 110.18633 * 19.38001 * 14 12 11 38 38 H 1.09006 * 109.96524 * 257.89861 * 14 12 11 39 39 H 0.96996 * 119.99743 * 179.97438 * 19 18 16 40 40 H 1.09003 * 109.77295 * 120.43130 * 24 15 14 41 41 H 1.09001 * 109.77235 * 241.19096 * 24 15 14 42 42 H 1.08999 * 108.94917 * 61.36834 * 27 10 8 43 43 H 1.09002 * 110.83112 * 300.49558 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0450 1.2087 0.0000 4 6 3.4364 1.2723 -0.0005 5 6 4.0577 2.5083 -0.0011 6 6 3.2666 3.6485 -0.0016 7 6 1.8819 3.5137 -0.0010 8 6 1.0268 4.7235 -0.0010 9 8 1.5354 5.8270 -0.0010 10 7 -0.3154 4.6001 -0.0010 11 6 -1.2700 5.7146 -0.0004 12 6 -2.6209 5.1407 -0.4644 13 1 -3.4758 5.6744 -0.0490 14 6 -2.6484 5.0519 -2.0032 15 7 -3.2847 3.7719 -2.3362 16 6 -3.8311 3.4511 -3.5501 17 1 -4.2707 2.4767 -3.7040 18 6 -3.8149 4.3764 -4.5848 19 7 -3.2739 5.5618 -4.3992 20 14 -4.5595 3.9385 -6.2411 21 1 -5.9994 3.6196 -6.0677 22 1 -4.4152 5.0893 -7.1685 23 1 -3.8555 2.7584 -6.8040 24 6 -3.2381 2.8879 -1.1667 25 6 -2.5530 3.6523 -0.0223 26 1 -3.0299 3.4770 0.9420 27 6 -1.0513 3.3256 -0.0189 28 7 1.3192 2.3102 0.0051 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 4.0240 0.3663 -0.0014 33 1 5.1350 2.5842 -0.0019 34 1 3.7203 4.6286 -0.0024 35 1 -0.9378 6.4905 -0.6900 36 1 -1.3646 6.1250 1.0049 37 1 -1.6334 5.0785 -2.3996 38 1 -3.2315 5.8765 -2.4132 39 1 -3.2623 6.2082 -5.1223 40 1 -4.2508 2.6126 -0.8720 41 1 -2.6665 1.9909 -1.4050 42 1 -0.7992 2.7587 0.8773 43 1 -0.7986 2.7446 -0.9058 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049147449.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:04 Heat of formation + Delta-G solvation = 13.544703 kcal Electronic energy + Delta-G solvation = -27490.703690 eV Core-core repulsion = 23730.830968 eV Total energy + Delta-G solvation = -3759.872721 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.02426 -39.82555 -38.44522 -37.47741 -34.96992 -32.97122 -32.13269 -31.05041 -30.06044 -29.50778 -27.49607 -25.94416 -25.38260 -24.44162 -23.03584 -22.55020 -20.22260 -20.07279 -19.29173 -17.97422 -17.64584 -16.77549 -16.36034 -16.18852 -16.00059 -15.75919 -15.25565 -14.73037 -14.32898 -14.22309 -13.68684 -13.58973 -13.42429 -13.19539 -12.97269 -12.70939 -12.32351 -12.02597 -11.87942 -11.72973 -11.62808 -11.41647 -11.22968 -10.95672 -10.79968 -10.47967 -10.30194 -10.15567 -10.12113 -10.03675 -9.82715 -9.52772 -9.45917 -8.74966 -8.62961 -8.26033 -6.84337 -5.68079 -3.07767 0.56288 1.11050 2.80610 2.92343 3.11567 3.39612 3.43870 3.45519 3.79450 3.96954 4.47818 4.57768 4.78092 4.84235 4.92216 5.02951 5.10055 5.21675 5.25554 5.30083 5.35217 5.51071 5.60313 5.62087 5.67563 5.75124 5.79306 5.93567 5.99820 6.12569 6.15557 6.23977 6.30428 6.38778 6.51434 6.57468 6.67973 6.86429 7.04519 7.51271 7.53602 7.62555 7.71630 7.83464 8.27832 8.32587 9.21575 9.82474 10.45815 11.37747 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014073 B = 0.004273 C = 0.003932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1989.142625 B = 6551.165284 C = 7119.030056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.307 6.307 3 C 0.318 3.682 4 C -0.171 4.171 5 C -0.049 4.049 6 C -0.150 4.150 7 C 0.130 3.870 8 C 0.579 3.421 9 O -0.538 6.538 10 N -0.585 5.585 11 C 0.118 3.882 12 C -0.123 4.123 13 H 0.095 0.905 14 C 0.171 3.829 15 N -0.601 5.601 16 C -0.228 4.228 17 H 0.077 0.923 18 C -0.008 4.008 19 N -0.921 5.921 20 Si 0.913 3.087 21 H -0.284 1.284 22 H -0.290 1.290 23 H -0.286 1.286 24 C 0.147 3.853 25 C -0.118 4.118 26 H 0.088 0.912 27 C 0.132 3.868 28 N -0.507 5.507 29 H 0.097 0.903 30 H 0.060 0.940 31 H 0.066 0.934 32 H 0.145 0.855 33 H 0.148 0.852 34 H 0.150 0.850 35 H 0.080 0.920 36 H 0.061 0.939 37 H 0.018 0.982 38 H 0.094 0.906 39 H 0.253 0.747 40 H 0.024 0.976 41 H 0.022 0.978 42 H 0.065 0.935 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.482 -7.891 12.693 18.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.214 6.214 3 C 0.137 3.863 4 C -0.192 4.192 5 C -0.074 4.074 6 C -0.172 4.172 7 C -0.007 4.007 8 C 0.366 3.634 9 O -0.416 6.416 10 N -0.316 5.316 11 C -0.005 4.005 12 C -0.143 4.143 13 H 0.113 0.887 14 C 0.046 3.954 15 N -0.327 5.327 16 C -0.356 4.356 17 H 0.095 0.905 18 C -0.204 4.204 19 N -0.569 5.569 20 Si 0.744 3.256 21 H -0.211 1.211 22 H -0.216 1.216 23 H -0.213 1.213 24 C 0.021 3.979 25 C -0.137 4.137 26 H 0.106 0.894 27 C 0.009 3.991 28 N -0.234 5.234 29 H 0.116 0.884 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.162 0.838 33 H 0.166 0.834 34 H 0.168 0.832 35 H 0.098 0.902 36 H 0.079 0.921 37 H 0.036 0.964 38 H 0.112 0.888 39 H 0.064 0.936 40 H 0.042 0.958 41 H 0.040 0.960 42 H 0.083 0.917 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 9.953 -7.515 12.484 17.646 hybrid contribution 0.259 -0.227 -0.954 1.014 sum 10.213 -7.742 11.531 17.239 Atomic orbital electron populations 1.23031 0.76610 1.03307 1.03050 1.86229 1.23370 1.24030 1.87776 1.19863 0.89401 0.84681 0.92354 1.21269 0.92030 0.99795 1.06126 1.21415 1.00784 0.90816 0.94393 1.21962 0.92946 1.00850 1.01434 1.20765 0.92065 0.90235 0.97673 1.17450 0.80887 0.87353 0.77756 1.90774 1.73231 1.25939 1.51642 1.48155 1.04424 1.09359 1.69639 1.21900 0.88325 0.89506 1.00728 1.23349 0.95314 0.94319 1.01280 0.88714 1.21502 0.97155 0.90874 0.85845 1.44234 1.68294 1.11626 1.08581 1.18995 1.30799 0.98859 0.86937 0.90505 1.24793 1.00966 0.96299 0.98329 1.69857 1.49454 1.05890 1.31666 0.86176 0.78880 0.77095 0.83471 1.21105 1.21562 1.21260 1.21118 0.96701 0.93078 0.87021 1.22877 0.94613 0.97048 0.99198 0.89389 1.22179 0.89729 0.84921 1.02233 1.67522 1.40272 0.98196 1.17410 0.88441 0.92083 0.91549 0.83752 0.83407 0.83201 0.90173 0.92053 0.96385 0.88848 0.93632 0.95819 0.95993 0.91716 0.90126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.38 101.05 1.05 1.42 16 2 O -0.31 -3.76 10.48 -18.68 -0.20 -3.96 16 3 C 0.32 4.12 7.49 -17.13 -0.13 3.99 16 4 C -0.17 -1.76 10.05 -39.16 -0.39 -2.15 16 5 C -0.05 -0.46 10.16 -39.35 -0.40 -0.86 16 6 C -0.15 -1.88 9.63 -39.05 -0.38 -2.25 16 7 C 0.13 1.99 6.71 -83.03 -0.56 1.43 16 8 C 0.58 10.38 7.83 -12.19 -0.10 10.29 16 9 O -0.54 -10.71 16.60 5.35 0.09 -10.63 16 10 N -0.59 -10.28 3.32 -172.95 -0.57 -10.86 16 11 C 0.12 2.03 6.04 -3.42 -0.02 2.01 16 12 C -0.12 -2.23 4.14 -88.24 -0.37 -2.60 16 13 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 14 C 0.17 4.10 4.95 -3.29 -0.02 4.08 16 15 N -0.60 -15.05 3.38 -171.72 -0.58 -15.63 16 16 C -0.23 -6.26 10.25 -15.06 -0.15 -6.42 16 17 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 18 C -0.01 -0.22 5.48 -17.43 -0.10 -0.32 16 19 N -0.92 -26.92 10.15 55.49 0.56 -26.36 16 20 Si 0.91 22.05 29.55 -169.99 -5.02 17.02 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 23 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 24 C 0.15 2.91 6.62 -3.57 -0.02 2.89 16 25 C -0.12 -1.94 4.01 -88.60 -0.36 -2.30 16 26 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 27 C 0.13 2.14 4.79 -3.32 -0.02 2.12 16 28 N -0.51 -7.43 5.62 -9.88 -0.06 -7.49 16 29 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.06 0.63 7.67 -51.93 -0.40 0.23 16 31 H 0.07 0.82 7.63 -51.93 -0.40 0.42 16 32 H 0.14 1.11 8.06 -52.49 -0.42 0.68 16 33 H 0.15 0.86 8.06 -52.49 -0.42 0.44 16 34 H 0.15 1.76 7.63 -52.49 -0.40 1.36 16 35 H 0.08 1.51 7.94 -51.93 -0.41 1.10 16 36 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.02 0.49 7.76 -51.93 -0.40 0.09 16 38 H 0.09 2.53 6.17 -51.93 -0.32 2.21 16 39 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 40 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.02 0.43 7.44 -51.93 -0.39 0.04 16 42 H 0.06 0.94 6.99 -51.93 -0.36 0.57 16 43 H 0.08 1.47 6.13 -51.93 -0.32 1.15 16 LS Contribution 347.27 15.07 5.23 5.23 Total: -1.00 -32.69 347.27 -8.40 -41.09 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: -5.90 Total: 0.24 kcal Atomic # 6 Polarization: 13.28 SS G_CDS: -1.95 Total: 11.33 kcal Atomic # 7 Polarization: -59.69 SS G_CDS: -0.65 Total: -60.33 kcal Atomic # 8 Polarization: -14.48 SS G_CDS: -0.11 Total: -14.58 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.69 -8.40 -41.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049147449.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.635 kcal (2) G-P(sol) polarization free energy of solvation -32.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.090 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds