Wall clock time and date at job start Tue Mar 31 2020 11:40:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35659 * 116.99964 * 2 1 4 4 C 1.39290 * 119.61644 * 180.02562 * 3 2 1 5 5 C 1.38331 * 119.30423 * 179.97438 * 4 3 2 6 6 C 1.38781 * 118.55913 * 359.97438 * 5 4 3 7 7 C 1.39126 * 119.19200 * 0.02562 * 6 5 4 8 8 C 1.48146 * 119.69155 * 179.97438 * 7 6 5 9 9 O 1.21514 * 120.00429 * 359.97438 * 8 7 6 10 10 N 1.34780 * 119.99962 * 179.97438 * 8 7 6 11 11 C 1.46744 * 125.32749 * 179.97438 * 10 8 7 12 12 C 1.53934 * 106.71783 * 161.66424 * 11 10 8 13 13 H 1.09000 * 113.01256 * 150.83147 * 12 11 10 14 14 C 1.54162 * 109.75329 * 278.27781 * 12 11 10 15 15 N 1.46774 * 106.52479 * 138.70009 * 14 12 11 16 16 C 1.36935 * 125.33842 * 161.35515 * 15 14 12 17 17 H 1.08000 * 120.00518 * 179.42267 * 16 15 14 18 18 C 1.38817 * 119.99990 * 359.68918 * 16 15 14 19 19 N 1.31617 * 119.99869 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99909 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47028 * 60.00888 * 20 18 16 22 22 H 1.48503 * 109.46851 * 180.02562 * 20 18 16 23 23 H 1.48492 * 109.47412 * 300.00497 * 20 18 16 24 24 C 1.46668 * 109.32539 * 341.09052 * 15 14 12 25 25 C 1.53730 * 107.94228 * 0.80889 * 24 15 14 26 26 H 1.08997 * 112.55938 * 139.72127 * 25 24 15 27 27 C 1.47175 * 125.25573 * 359.14521 * 10 8 7 28 28 N 1.31909 * 119.61829 * 0.25400 * 3 2 1 29 29 H 1.09005 * 109.47090 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47150 * 299.99799 * 1 2 3 31 31 H 1.08993 * 109.47219 * 60.00273 * 1 2 3 32 32 H 1.07994 * 120.34814 * 0.02562 * 4 3 2 33 33 H 1.08002 * 120.71854 * 180.02562 * 5 4 3 34 34 H 1.08002 * 120.40366 * 180.02562 * 6 5 4 35 35 H 1.08997 * 110.00923 * 42.35031 * 11 10 8 36 36 H 1.08995 * 110.04888 * 280.99928 * 11 10 8 37 37 H 1.08992 * 110.18633 * 19.38001 * 14 12 11 38 38 H 1.09006 * 109.96524 * 257.89861 * 14 12 11 39 39 H 0.96996 * 119.99743 * 179.97438 * 19 18 16 40 40 H 1.09003 * 109.77295 * 120.43130 * 24 15 14 41 41 H 1.09001 * 109.77235 * 241.19096 * 24 15 14 42 42 H 1.08999 * 108.94917 * 61.36834 * 27 10 8 43 43 H 1.09002 * 110.83112 * 300.49558 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0450 1.2087 0.0000 4 6 3.4364 1.2723 -0.0005 5 6 4.0577 2.5083 -0.0011 6 6 3.2666 3.6485 -0.0016 7 6 1.8819 3.5137 -0.0010 8 6 1.0268 4.7235 -0.0010 9 8 1.5354 5.8270 -0.0010 10 7 -0.3154 4.6001 -0.0010 11 6 -1.2700 5.7146 -0.0004 12 6 -2.6209 5.1407 -0.4644 13 1 -3.4758 5.6744 -0.0490 14 6 -2.6484 5.0519 -2.0032 15 7 -3.2847 3.7719 -2.3362 16 6 -3.8311 3.4511 -3.5501 17 1 -4.2707 2.4767 -3.7040 18 6 -3.8149 4.3764 -4.5848 19 7 -3.2739 5.5618 -4.3992 20 14 -4.5595 3.9385 -6.2411 21 1 -5.9994 3.6196 -6.0677 22 1 -4.4152 5.0893 -7.1685 23 1 -3.8555 2.7584 -6.8040 24 6 -3.2381 2.8879 -1.1667 25 6 -2.5530 3.6523 -0.0223 26 1 -3.0299 3.4770 0.9420 27 6 -1.0513 3.3256 -0.0189 28 7 1.3192 2.3102 0.0051 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 4.0240 0.3663 -0.0014 33 1 5.1350 2.5842 -0.0019 34 1 3.7203 4.6286 -0.0024 35 1 -0.9378 6.4905 -0.6900 36 1 -1.3646 6.1250 1.0049 37 1 -1.6334 5.0785 -2.3996 38 1 -3.2315 5.8765 -2.4132 39 1 -3.2623 6.2082 -5.1223 40 1 -4.2508 2.6126 -0.8720 41 1 -2.6665 1.9909 -1.4050 42 1 -0.7992 2.7587 0.8773 43 1 -0.7986 2.7446 -0.9058 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049147449.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:03 Heat of formation + Delta-G solvation = -8.716301 kcal Electronic energy + Delta-G solvation = -27491.668999 eV Core-core repulsion = 23730.830968 eV Total energy + Delta-G solvation = -3760.838031 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.11350 -41.10839 -39.75931 -38.56406 -36.65810 -34.29789 -33.64277 -32.15605 -31.47095 -31.21365 -28.43909 -27.59701 -26.99045 -25.78265 -24.08600 -23.84216 -21.91756 -21.35386 -20.78397 -19.08836 -18.95584 -18.55903 -17.65528 -17.14048 -17.02689 -16.86148 -16.61863 -16.48786 -15.87192 -15.48283 -15.14693 -14.82008 -14.71014 -14.49335 -14.22780 -14.06790 -13.64415 -13.40033 -13.34657 -13.15724 -13.11632 -12.79527 -12.71496 -12.63031 -12.17850 -12.06434 -11.92667 -11.85988 -11.68440 -11.51930 -11.24440 -10.99636 -10.72732 -10.57770 -9.85771 -9.49883 -8.88766 -7.80452 -5.22249 -0.43865 0.23046 1.44373 1.47559 1.53982 1.59180 1.84323 2.08113 2.48550 2.75203 2.87982 3.31246 3.36802 3.55557 3.73120 3.85900 3.92197 3.96488 4.01379 4.21470 4.24590 4.33834 4.45056 4.45954 4.47296 4.52686 4.64918 4.76569 4.81085 4.81991 4.91282 4.94094 5.00826 5.08563 5.10593 5.24073 5.33814 5.41407 5.46542 5.61647 5.79703 6.11106 6.26540 6.34861 6.54747 6.95548 7.10261 7.79796 8.41239 9.23488 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014073 B = 0.004273 C = 0.003932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1989.142625 B = 6551.165284 C = 7119.030056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.311 6.311 3 C 0.298 3.702 4 C -0.156 4.156 5 C -0.034 4.034 6 C -0.150 4.150 7 C 0.095 3.905 8 C 0.571 3.429 9 O -0.571 6.571 10 N -0.593 5.593 11 C 0.121 3.879 12 C -0.111 4.111 13 H 0.117 0.883 14 C 0.184 3.816 15 N -0.623 5.623 16 C -0.239 4.239 17 H 0.085 0.915 18 C -0.067 4.067 19 N -0.951 5.951 20 Si 0.978 3.022 21 H -0.272 1.272 22 H -0.297 1.297 23 H -0.280 1.280 24 C 0.141 3.859 25 C -0.102 4.102 26 H 0.134 0.866 27 C 0.143 3.857 28 N -0.524 5.524 29 H 0.124 0.876 30 H 0.064 0.936 31 H 0.043 0.957 32 H 0.178 0.822 33 H 0.194 0.806 34 H 0.152 0.848 35 H 0.052 0.948 36 H 0.093 0.907 37 H -0.028 1.028 38 H 0.056 0.944 39 H 0.245 0.755 40 H 0.038 0.962 41 H 0.027 0.973 42 H 0.088 0.912 43 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.272 -10.252 14.436 20.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.218 6.218 3 C 0.116 3.884 4 C -0.177 4.177 5 C -0.059 4.059 6 C -0.172 4.172 7 C -0.040 4.040 8 C 0.359 3.641 9 O -0.451 6.451 10 N -0.323 5.323 11 C -0.002 4.002 12 C -0.131 4.131 13 H 0.135 0.865 14 C 0.058 3.942 15 N -0.349 5.349 16 C -0.368 4.368 17 H 0.102 0.898 18 C -0.260 4.260 19 N -0.601 5.601 20 Si 0.806 3.194 21 H -0.198 1.198 22 H -0.223 1.223 23 H -0.206 1.206 24 C 0.016 3.984 25 C -0.121 4.121 26 H 0.152 0.848 27 C 0.021 3.979 28 N -0.251 5.251 29 H 0.143 0.857 30 H 0.082 0.918 31 H 0.062 0.938 32 H 0.195 0.805 33 H 0.211 0.789 34 H 0.170 0.830 35 H 0.071 0.929 36 H 0.111 0.889 37 H -0.010 1.010 38 H 0.074 0.926 39 H 0.054 0.946 40 H 0.056 0.944 41 H 0.045 0.955 42 H 0.106 0.894 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 10.723 -9.916 14.257 20.410 hybrid contribution 0.082 0.417 -1.509 1.567 sum 10.806 -9.499 12.749 19.223 Atomic orbital electron populations 1.23116 0.76079 1.04785 1.02031 1.86234 1.23971 1.23689 1.87868 1.20293 0.90630 0.84377 0.93094 1.21745 0.91076 1.01408 1.03454 1.21895 1.02629 0.89193 0.92138 1.22169 0.92085 1.02285 1.00661 1.20523 0.92759 0.89577 1.01177 1.18000 0.81114 0.88102 0.76877 1.90731 1.73780 1.27366 1.53216 1.48304 1.04692 1.09751 1.69575 1.21860 0.87641 0.89055 1.01619 1.23187 0.96744 0.96385 0.96816 0.86462 1.21127 0.93621 0.89632 0.89802 1.44552 1.67926 1.12976 1.09449 1.19428 1.30113 0.99027 0.88214 0.89757 1.25644 1.02057 0.96381 1.01912 1.70138 1.51072 1.06822 1.32071 0.85155 0.78598 0.76492 0.79124 1.19761 1.22308 1.20644 1.21338 0.97849 0.92821 0.86359 1.22948 0.94686 0.94579 0.99878 0.84841 1.22087 0.89365 0.84308 1.02141 1.67324 1.41234 0.98400 1.18132 0.85746 0.91751 0.93845 0.80455 0.78892 0.83046 0.92901 0.88916 1.00979 0.92635 0.94569 0.94416 0.95520 0.89389 0.92629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.69 10.38 113.37 1.18 1.87 16 2 O -0.31 -7.05 10.48 -89.75 -0.94 -7.99 16 3 C 0.30 7.20 7.49 84.93 0.64 7.84 16 4 C -0.16 -2.69 10.05 22.55 0.23 -2.46 16 5 C -0.03 -0.53 10.16 22.42 0.23 -0.30 16 6 C -0.15 -3.57 9.63 22.61 0.22 -3.35 16 7 C 0.10 2.92 6.71 41.84 0.28 3.20 16 8 C 0.57 21.05 7.83 86.87 0.68 21.73 16 9 O -0.57 -23.63 16.60 -3.76 -0.06 -23.69 16 10 N -0.59 -21.10 3.32 -819.39 -2.72 -23.82 16 11 C 0.12 4.20 6.04 86.65 0.52 4.73 16 12 C -0.11 -4.03 4.14 -9.25 -0.04 -4.07 16 13 H 0.12 3.75 8.14 -2.39 -0.02 3.73 16 14 C 0.18 9.21 4.95 86.72 0.43 9.64 16 15 N -0.62 -31.82 3.38 -697.19 -2.36 -34.17 16 16 C -0.24 -13.38 10.25 84.04 0.86 -12.52 16 17 H 0.08 4.46 7.83 -2.91 -0.02 4.44 16 18 C -0.07 -3.88 5.48 84.86 0.47 -3.42 16 19 N -0.95 -58.39 10.15 21.65 0.22 -58.17 16 20 Si 0.98 46.26 29.55 68.60 2.03 48.29 16 21 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 22 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 23 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 24 C 0.14 5.45 6.62 86.59 0.57 6.02 16 25 C -0.10 -3.16 4.01 -9.49 -0.04 -3.20 16 26 H 0.13 3.06 8.14 -2.39 -0.02 3.04 16 27 C 0.14 4.54 4.79 86.48 0.41 4.96 16 28 N -0.52 -15.07 5.62 -298.21 -1.68 -16.75 16 29 H 0.12 1.73 8.14 -2.38 -0.02 1.71 16 30 H 0.06 1.22 7.67 -2.39 -0.02 1.20 16 31 H 0.04 1.06 7.63 -2.39 -0.02 1.04 16 32 H 0.18 1.87 8.06 -2.91 -0.02 1.84 16 33 H 0.19 1.25 8.06 -2.91 -0.02 1.22 16 34 H 0.15 3.48 7.63 -2.91 -0.02 3.45 16 35 H 0.05 2.12 7.94 -2.39 -0.02 2.10 16 36 H 0.09 2.67 8.14 -2.39 -0.02 2.65 16 37 H -0.03 -1.62 7.76 -2.39 -0.02 -1.63 16 38 H 0.06 3.20 6.17 -2.38 -0.01 3.18 16 39 H 0.24 14.73 8.31 -92.71 -0.77 13.96 16 40 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.03 1.02 7.44 -2.39 -0.02 1.00 16 42 H 0.09 2.39 6.99 -2.39 -0.02 2.37 16 43 H 0.06 2.07 6.13 -2.39 -0.01 2.05 16 Total: -1.00 -76.26 347.27 2.15 -74.11 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: 1.02 Total: 11.54 kcal Atomic # 6 Polarization: 24.03 SS G_CDS: 6.64 Total: 30.67 kcal Atomic # 7 Polarization: -126.38 SS G_CDS: -6.54 Total: -132.92 kcal Atomic # 8 Polarization: -30.68 SS G_CDS: -1.00 Total: -31.68 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 2.03 Total: 48.29 kcal Total: -76.26 2.15 -74.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049147449.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.392 kcal (2) G-P(sol) polarization free energy of solvation -76.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds