Wall clock time and date at job start Tue Mar 31 2020 11:39:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35690 * 116.99491 * 2 1 4 4 C 1.38897 * 119.61723 * 179.97438 * 3 2 1 5 5 C 1.39573 * 118.94343 * 180.02562 * 4 3 2 6 6 C 1.48159 * 120.89210 * 180.02562 * 5 4 3 7 7 O 1.21514 * 119.99982 * 7.47197 * 6 5 4 8 8 N 1.34778 * 119.99833 * 187.20530 * 6 5 4 9 9 C 1.47384 * 135.85629 * 356.65885 * 8 6 5 10 10 C 1.52074 * 87.41280 * 154.39287 * 9 8 6 11 11 C 1.47397 * 135.85199 * 177.03683 * 8 6 5 12 12 C 1.53514 * 117.21457 * 267.27809 * 10 9 8 13 13 C 1.54632 * 102.70356 * 262.93324 * 12 10 9 14 14 N 1.47140 * 107.37592 * 339.38291 * 13 12 10 15 15 C 1.36936 * 125.57898 * 179.07136 * 14 13 12 16 16 H 1.08003 * 120.00107 * 180.02562 * 15 14 13 17 17 C 1.38812 * 120.00095 * 0.02562 * 15 14 13 18 18 N 1.31616 * 120.00001 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00093 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47498 * 60.00064 * 19 17 15 21 21 H 1.48502 * 109.46937 * 180.02562 * 19 17 15 22 22 H 1.48507 * 109.46802 * 299.99714 * 19 17 15 23 23 C 1.47759 * 108.84336 * 359.08779 * 14 13 12 24 24 C 1.39971 * 118.21869 * 0.27468 * 5 4 3 25 25 C 1.37983 * 119.13031 * 359.45461 * 24 5 4 26 26 N 1.31911 * 120.97846 * 0.55842 * 25 24 5 27 27 H 1.08999 * 109.47477 * 299.99612 * 1 2 3 28 28 H 1.09004 * 109.47109 * 60.00074 * 1 2 3 29 29 H 1.09006 * 109.46863 * 179.97438 * 1 2 3 30 30 H 1.07998 * 120.53287 * 0.04285 * 4 3 2 31 31 H 1.09007 * 113.54699 * 269.00406 * 9 8 6 32 32 H 1.08997 * 113.54746 * 39.67712 * 9 8 6 33 33 H 1.09001 * 113.54084 * 320.31831 * 11 8 6 34 34 H 1.09001 * 113.54502 * 90.92141 * 11 8 6 35 35 H 1.09007 * 110.75815 * 21.23404 * 12 10 9 36 36 H 1.08996 * 110.76472 * 144.62259 * 12 10 9 37 37 H 1.09001 * 109.86313 * 98.83171 * 13 12 10 38 38 H 1.08999 * 109.86024 * 219.93237 * 13 12 10 39 39 H 0.97000 * 120.00540 * 180.02562 * 18 17 15 40 40 H 1.08996 * 110.40727 * 263.50471 * 23 14 13 41 41 H 1.08997 * 110.40710 * 141.07964 * 23 14 13 42 42 H 1.07995 * 120.43838 * 179.70906 * 24 5 4 43 43 H 1.07998 * 119.51295 * 180.27305 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2091 0.0000 4 6 3.4324 1.2726 0.0005 5 6 4.0513 2.5236 0.0011 6 6 5.5282 2.6417 0.0011 7 8 6.2170 1.6501 -0.1362 8 7 6.1076 3.8497 0.1480 9 6 5.6366 5.2410 0.2684 10 6 6.9273 5.5407 1.0146 11 6 7.4885 4.3548 0.2515 12 6 6.8946 5.4322 2.5455 13 6 6.6773 6.8985 2.9858 14 7 7.0921 7.7593 1.8669 15 6 7.0377 9.1275 1.8517 16 1 7.3667 9.6714 0.9785 17 6 6.5598 9.8155 2.9585 18 7 6.1594 9.1529 4.0229 19 14 6.4849 11.6820 2.9374 20 1 5.6040 12.1296 1.8290 21 1 5.9414 12.1701 4.2303 22 1 7.8505 12.2298 2.7366 23 6 7.5766 6.9059 0.7623 24 6 3.2393 3.6637 0.0070 25 6 1.8679 3.5116 0.0005 26 7 1.3177 2.3127 0.0000 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 4.0231 0.3685 0.0003 31 1 5.5564 5.7579 -0.6879 32 1 4.7422 5.3464 0.8825 33 1 8.1404 3.7200 0.8515 34 1 7.9274 4.6222 -0.7098 35 1 6.0652 4.8041 2.8707 36 1 7.8421 5.0507 2.9262 37 1 5.6239 7.0654 3.2108 38 1 7.2845 7.1151 3.8647 39 1 5.8251 9.6335 4.7962 40 1 8.6629 6.8220 0.7952 41 1 7.2546 7.3082 -0.1981 42 1 3.6803 4.6495 0.0123 43 1 1.2355 4.3871 0.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001072892452.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:34 Heat of formation + Delta-G solvation = 51.201681 kcal Electronic energy + Delta-G solvation = -26293.926373 eV Core-core repulsion = 22535.686581 eV Total energy + Delta-G solvation = -3758.239792 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.23640 -40.47309 -38.60619 -37.75404 -35.78353 -32.97368 -32.22234 -31.08782 -29.59459 -28.79104 -27.59117 -26.31297 -26.09898 -24.33385 -23.48675 -23.23826 -20.42013 -20.13769 -18.64745 -18.25665 -17.48809 -16.92064 -16.39113 -16.27068 -16.05928 -15.74340 -15.42941 -14.84726 -14.49488 -14.37148 -14.23769 -13.99503 -13.81359 -13.42742 -13.08772 -12.66010 -12.38963 -12.35611 -12.08299 -11.90642 -11.84070 -11.47785 -11.04691 -10.97377 -10.70263 -10.59493 -10.36101 -10.19601 -10.13473 -10.12478 -9.94407 -9.69897 -9.60951 -8.78635 -8.70073 -8.65313 -6.90481 -5.76875 -3.10984 0.51087 0.91602 2.52329 2.76152 2.95996 3.36773 3.41624 3.42783 3.62908 4.02198 4.17566 4.41272 4.52327 4.70989 4.78017 4.83274 4.86648 5.00335 5.05473 5.14993 5.31564 5.39914 5.42451 5.44404 5.50259 5.55377 5.59084 5.69538 5.71105 5.75443 5.89936 6.03835 6.10946 6.16391 6.38675 6.44000 6.57909 6.63150 6.94201 7.49239 7.54190 7.54720 7.63005 7.76339 8.00885 8.18748 9.15566 9.75599 10.40661 11.34516 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.018562 B = 0.003026 C = 0.002731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.078440 B = 9250.224408 C =10248.500841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.307 6.307 3 C 0.315 3.685 4 C -0.135 4.135 5 C -0.044 4.044 6 C 0.585 3.415 7 O -0.536 6.536 8 N -0.633 5.633 9 C 0.109 3.891 10 C -0.105 4.105 11 C 0.122 3.878 12 C -0.118 4.118 13 C 0.179 3.821 14 N -0.604 5.604 15 C -0.230 4.230 16 H 0.078 0.922 17 C -0.006 4.006 18 N -0.921 5.921 19 Si 0.912 3.088 20 H -0.285 1.285 21 H -0.291 1.291 22 H -0.285 1.285 23 C 0.154 3.846 24 C -0.190 4.190 25 C 0.138 3.862 26 N -0.528 5.528 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.096 0.904 30 H 0.153 0.847 31 H 0.094 0.906 32 H 0.090 0.910 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.061 0.939 36 H 0.065 0.935 37 H 0.047 0.953 38 H 0.044 0.956 39 H 0.253 0.747 40 H 0.028 0.972 41 H 0.043 0.957 42 H 0.157 0.843 43 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.810 -13.269 -8.389 17.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.214 6.214 3 C 0.136 3.864 4 C -0.156 4.156 5 C -0.055 4.055 6 C 0.374 3.626 7 O -0.414 6.414 8 N -0.367 5.367 9 C -0.013 4.013 10 C -0.106 4.106 11 C -0.001 4.001 12 C -0.156 4.156 13 C 0.055 3.945 14 N -0.331 5.331 15 C -0.358 4.358 16 H 0.096 0.904 17 C -0.203 4.203 18 N -0.569 5.569 19 Si 0.742 3.258 20 H -0.212 1.212 21 H -0.216 1.216 22 H -0.212 1.212 23 C 0.027 3.973 24 C -0.210 4.210 25 C -0.017 4.017 26 N -0.252 5.252 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.114 0.886 30 H 0.171 0.829 31 H 0.112 0.888 32 H 0.108 0.892 33 H 0.099 0.901 34 H 0.106 0.894 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.065 0.935 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.046 0.954 41 H 0.062 0.938 42 H 0.175 0.825 43 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -8.406 -14.191 -8.322 18.474 hybrid contribution 0.467 1.223 0.049 1.310 sum -7.939 -12.968 -8.273 17.310 Atomic orbital electron populations 1.22877 0.77049 1.03004 1.02554 1.86253 1.23020 1.24206 1.87883 1.19643 0.88933 0.84869 0.92991 1.21089 0.91912 0.98975 1.03668 1.20050 0.93520 0.93279 0.98658 1.17540 0.86467 0.81729 0.76833 1.90776 1.64336 1.35988 1.50257 1.49642 1.10966 1.05336 1.70761 1.23185 0.99200 0.78484 1.00395 1.22204 0.95491 0.95925 0.97009 1.22844 0.84362 0.92738 1.00119 1.22490 1.01052 1.00692 0.91391 1.21228 0.99705 0.83153 0.90434 1.44529 1.74860 1.01720 1.11984 1.18990 1.36763 0.80011 1.00065 0.90425 1.24794 1.01203 0.98041 0.96256 1.69940 1.48360 1.33601 1.04975 0.86210 0.77752 0.85067 0.76768 1.21154 1.21636 1.21179 1.21139 0.95988 0.87405 0.92786 1.22868 0.95044 1.00360 1.02757 1.22442 0.92670 0.93579 0.93013 1.67188 1.41284 0.98975 1.17766 0.92167 0.92242 0.88560 0.82938 0.88826 0.89176 0.90107 0.89371 0.92069 0.91656 0.93463 0.93750 0.93652 0.95449 0.93833 0.82541 0.81491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.33 10.38 101.05 1.05 1.38 16 2 O -0.31 -3.55 10.47 -18.77 -0.20 -3.75 16 3 C 0.31 3.98 7.49 -17.16 -0.13 3.85 16 4 C -0.13 -1.77 9.61 -38.84 -0.37 -2.15 16 5 C -0.04 -0.60 5.91 -104.68 -0.62 -1.21 16 6 C 0.58 8.92 8.03 -12.19 -0.10 8.82 16 7 O -0.54 -9.70 17.24 5.35 0.09 -9.61 16 8 N -0.63 -8.78 3.69 -186.74 -0.69 -9.47 16 9 C 0.11 1.42 5.90 -7.34 -0.04 1.38 16 10 C -0.10 -1.57 1.06 -155.22 -0.16 -1.73 16 11 C 0.12 1.60 8.03 -7.48 -0.06 1.54 16 12 C -0.12 -2.01 6.41 -25.61 -0.16 -2.18 16 13 C 0.18 4.01 5.39 -2.83 -0.02 4.00 16 14 N -0.60 -14.06 3.41 -170.54 -0.58 -14.64 16 15 C -0.23 -5.99 10.28 -15.06 -0.15 -6.14 16 16 H 0.08 1.94 7.83 -52.48 -0.41 1.53 16 17 C -0.01 -0.17 5.49 -17.43 -0.10 -0.27 16 18 N -0.92 -25.84 10.30 55.49 0.57 -25.27 16 19 Si 0.91 21.16 29.55 -169.99 -5.02 16.13 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 21 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.29 -6.57 7.11 56.52 0.40 -6.16 16 23 C 0.15 2.74 6.70 -3.22 -0.02 2.72 16 24 C -0.19 -2.17 9.28 -39.03 -0.36 -2.53 16 25 C 0.14 1.47 11.17 -17.61 -0.20 1.27 16 26 N -0.53 -6.37 9.18 -13.37 -0.12 -6.49 16 27 H 0.06 0.49 8.10 -51.93 -0.42 0.07 16 28 H 0.06 0.47 8.10 -51.93 -0.42 0.05 16 29 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.15 1.98 7.76 -52.49 -0.41 1.57 16 31 H 0.09 1.07 8.06 -51.92 -0.42 0.65 16 32 H 0.09 1.16 6.17 -51.93 -0.32 0.84 16 33 H 0.08 1.07 8.13 -51.93 -0.42 0.65 16 34 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.06 1.00 8.07 -51.93 -0.42 0.58 16 36 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.05 1.17 7.39 -51.93 -0.38 0.79 16 38 H 0.04 1.13 7.49 -51.93 -0.39 0.74 16 39 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 40 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.04 0.73 8.00 -51.93 -0.42 0.32 16 42 H 0.16 1.63 3.97 -52.49 -0.21 1.42 16 43 H 0.17 1.28 8.06 -52.49 -0.42 0.85 16 LS Contribution 354.30 15.07 5.34 5.34 Total: -1.00 -31.69 354.30 -7.94 -39.63 By element: Atomic # 1 Polarization: 5.26 SS G_CDS: -5.89 Total: -0.62 kcal Atomic # 6 Polarization: 10.19 SS G_CDS: -1.45 Total: 8.74 kcal Atomic # 7 Polarization: -55.05 SS G_CDS: -0.82 Total: -55.87 kcal Atomic # 8 Polarization: -13.25 SS G_CDS: -0.10 Total: -13.35 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.69 -7.94 -39.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072892452.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.835 kcal (2) G-P(sol) polarization free energy of solvation -31.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.633 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds