Wall clock time and date at job start Tue Mar 31 2020 11:39:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35690 * 116.99491 * 2 1 4 4 C 1.38897 * 119.61723 * 179.97438 * 3 2 1 5 5 C 1.39573 * 118.94343 * 180.02562 * 4 3 2 6 6 C 1.48159 * 120.89210 * 180.02562 * 5 4 3 7 7 O 1.21514 * 119.99982 * 7.47197 * 6 5 4 8 8 N 1.34778 * 119.99833 * 187.20530 * 6 5 4 9 9 C 1.47384 * 135.85629 * 356.65885 * 8 6 5 10 10 C 1.52074 * 87.41280 * 154.39287 * 9 8 6 11 11 C 1.47397 * 135.85199 * 177.03683 * 8 6 5 12 12 C 1.53514 * 117.21457 * 267.27809 * 10 9 8 13 13 C 1.54632 * 102.70356 * 262.93324 * 12 10 9 14 14 N 1.47140 * 107.37592 * 339.38291 * 13 12 10 15 15 C 1.36936 * 125.57898 * 179.07136 * 14 13 12 16 16 H 1.08003 * 120.00107 * 180.02562 * 15 14 13 17 17 C 1.38812 * 120.00095 * 0.02562 * 15 14 13 18 18 N 1.31616 * 120.00001 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00093 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47498 * 60.00064 * 19 17 15 21 21 H 1.48502 * 109.46937 * 180.02562 * 19 17 15 22 22 H 1.48507 * 109.46802 * 299.99714 * 19 17 15 23 23 C 1.47759 * 108.84336 * 359.08779 * 14 13 12 24 24 C 1.39971 * 118.21869 * 0.27468 * 5 4 3 25 25 C 1.37983 * 119.13031 * 359.45461 * 24 5 4 26 26 N 1.31911 * 120.97846 * 0.55842 * 25 24 5 27 27 H 1.08999 * 109.47477 * 299.99612 * 1 2 3 28 28 H 1.09004 * 109.47109 * 60.00074 * 1 2 3 29 29 H 1.09006 * 109.46863 * 179.97438 * 1 2 3 30 30 H 1.07998 * 120.53287 * 0.04285 * 4 3 2 31 31 H 1.09007 * 113.54699 * 269.00406 * 9 8 6 32 32 H 1.08997 * 113.54746 * 39.67712 * 9 8 6 33 33 H 1.09001 * 113.54084 * 320.31831 * 11 8 6 34 34 H 1.09001 * 113.54502 * 90.92141 * 11 8 6 35 35 H 1.09007 * 110.75815 * 21.23404 * 12 10 9 36 36 H 1.08996 * 110.76472 * 144.62259 * 12 10 9 37 37 H 1.09001 * 109.86313 * 98.83171 * 13 12 10 38 38 H 1.08999 * 109.86024 * 219.93237 * 13 12 10 39 39 H 0.97000 * 120.00540 * 180.02562 * 18 17 15 40 40 H 1.08996 * 110.40727 * 263.50471 * 23 14 13 41 41 H 1.08997 * 110.40710 * 141.07964 * 23 14 13 42 42 H 1.07995 * 120.43838 * 179.70906 * 24 5 4 43 43 H 1.07998 * 119.51295 * 180.27305 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2091 0.0000 4 6 3.4324 1.2726 0.0005 5 6 4.0513 2.5236 0.0011 6 6 5.5282 2.6417 0.0011 7 8 6.2170 1.6501 -0.1362 8 7 6.1076 3.8497 0.1480 9 6 5.6366 5.2410 0.2684 10 6 6.9273 5.5407 1.0146 11 6 7.4885 4.3548 0.2515 12 6 6.8946 5.4322 2.5455 13 6 6.6773 6.8985 2.9858 14 7 7.0921 7.7593 1.8669 15 6 7.0377 9.1275 1.8517 16 1 7.3667 9.6714 0.9785 17 6 6.5598 9.8155 2.9585 18 7 6.1594 9.1529 4.0229 19 14 6.4849 11.6820 2.9374 20 1 5.6040 12.1296 1.8290 21 1 5.9414 12.1701 4.2303 22 1 7.8505 12.2298 2.7366 23 6 7.5766 6.9059 0.7623 24 6 3.2393 3.6637 0.0070 25 6 1.8679 3.5116 0.0005 26 7 1.3177 2.3127 0.0000 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 4.0231 0.3685 0.0003 31 1 5.5564 5.7579 -0.6879 32 1 4.7422 5.3464 0.8825 33 1 8.1404 3.7200 0.8515 34 1 7.9274 4.6222 -0.7098 35 1 6.0652 4.8041 2.8707 36 1 7.8421 5.0507 2.9262 37 1 5.6239 7.0654 3.2108 38 1 7.2845 7.1151 3.8647 39 1 5.8251 9.6335 4.7962 40 1 8.6629 6.8220 0.7952 41 1 7.2546 7.3082 -0.1981 42 1 3.6803 4.6495 0.0123 43 1 1.2355 4.3871 0.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001072892452.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:33 Heat of formation + Delta-G solvation = 29.376366 kcal Electronic energy + Delta-G solvation = -26294.872790 eV Core-core repulsion = 22535.686581 eV Total energy + Delta-G solvation = -3759.186209 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.30485 -41.49371 -39.75777 -38.71190 -37.34787 -34.22457 -33.74106 -32.03426 -31.14767 -30.23761 -28.34436 -27.58768 -27.34705 -25.86495 -24.46906 -24.36472 -22.10903 -21.23235 -19.92492 -19.25217 -18.65689 -18.41875 -17.51755 -17.14720 -17.06453 -16.87127 -16.65097 -16.45332 -15.96127 -15.58197 -15.26742 -15.07230 -15.02793 -14.42968 -14.22844 -14.09714 -13.72643 -13.70556 -13.38387 -13.14925 -12.85575 -12.71896 -12.68692 -12.24361 -12.16965 -12.04797 -11.95747 -11.81301 -11.69019 -11.30527 -11.19883 -11.12049 -10.68449 -10.62292 -9.83145 -9.65896 -8.81416 -7.77796 -5.12121 -0.47330 0.02054 1.49604 1.52416 1.54134 1.60110 1.68283 2.08052 2.55459 2.68464 3.05705 3.25693 3.31680 3.45355 3.58561 3.75483 3.82596 3.91037 3.94816 4.06500 4.23101 4.37498 4.42147 4.43425 4.48503 4.55622 4.59176 4.64744 4.70851 4.74421 4.76783 4.87377 4.93149 4.98091 5.05732 5.19103 5.21477 5.25816 5.54766 5.71608 5.84316 6.10765 6.26118 6.50411 6.65309 6.86947 7.17378 7.85248 8.49042 9.32304 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.018562 B = 0.003026 C = 0.002731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.078440 B = 9250.224408 C =10248.500841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.319 6.319 3 C 0.308 3.692 4 C -0.149 4.149 5 C -0.056 4.056 6 C 0.584 3.416 7 O -0.572 6.572 8 N -0.631 5.631 9 C 0.114 3.886 10 C -0.099 4.099 11 C 0.127 3.873 12 C -0.104 4.104 13 C 0.190 3.810 14 N -0.624 5.624 15 C -0.233 4.233 16 H 0.087 0.913 17 C -0.066 4.066 18 N -0.952 5.952 19 Si 0.973 3.027 20 H -0.274 1.274 21 H -0.301 1.301 22 H -0.281 1.281 23 C 0.152 3.848 24 C -0.185 4.185 25 C 0.143 3.857 26 N -0.533 5.533 27 H 0.059 0.941 28 H 0.061 0.939 29 H 0.123 0.877 30 H 0.145 0.855 31 H 0.121 0.879 32 H 0.093 0.907 33 H 0.080 0.920 34 H 0.115 0.885 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.015 0.985 38 H 0.002 0.998 39 H 0.244 0.756 40 H 0.034 0.966 41 H 0.062 0.938 42 H 0.170 0.830 43 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.480 -13.058 -10.265 18.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.226 6.226 3 C 0.130 3.870 4 C -0.171 4.171 5 C -0.066 4.066 6 C 0.374 3.626 7 O -0.453 6.453 8 N -0.364 5.364 9 C -0.007 4.007 10 C -0.100 4.100 11 C 0.005 3.995 12 C -0.142 4.142 13 C 0.065 3.935 14 N -0.351 5.351 15 C -0.362 4.362 16 H 0.105 0.895 17 C -0.259 4.259 18 N -0.602 5.602 19 Si 0.802 3.198 20 H -0.200 1.200 21 H -0.228 1.228 22 H -0.207 1.207 23 C 0.027 3.973 24 C -0.205 4.205 25 C -0.013 4.013 26 N -0.257 5.257 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.141 0.859 30 H 0.163 0.837 31 H 0.139 0.861 32 H 0.111 0.889 33 H 0.099 0.901 34 H 0.133 0.867 35 H 0.088 0.912 36 H 0.091 0.909 37 H 0.034 0.966 38 H 0.020 0.980 39 H 0.053 0.947 40 H 0.052 0.948 41 H 0.080 0.920 42 H 0.187 0.813 43 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -9.065 -13.986 -10.238 19.560 hybrid contribution 0.675 1.156 0.620 1.475 sum -8.390 -12.830 -9.618 18.097 Atomic orbital electron populations 1.23125 0.75293 1.04891 1.02572 1.86241 1.24805 1.23903 1.87690 1.19723 0.88868 0.85449 0.92972 1.21092 0.92386 0.98885 1.04728 1.19998 0.92709 0.94085 0.99848 1.17781 0.87093 0.81465 0.76255 1.90753 1.65258 1.37122 1.52157 1.49613 1.11417 1.05339 1.69992 1.23309 0.98171 0.77858 1.01400 1.21995 0.97269 0.95227 0.95544 1.22906 0.84181 0.91330 1.01044 1.22278 1.01755 0.96911 0.93282 1.20909 0.96812 0.86380 0.89407 1.44801 1.74898 1.01609 1.13759 1.19415 1.35120 0.81710 0.99976 0.89496 1.25567 1.02050 1.01985 0.96323 1.70165 1.49956 1.34662 1.05396 0.85235 0.77787 0.80493 0.76310 1.20032 1.22757 1.20703 1.21308 0.96338 0.87891 0.91791 1.22994 0.95260 1.00109 1.02150 1.23017 0.92835 0.94098 0.91320 1.67284 1.41320 0.99274 1.17854 0.92250 0.92028 0.85852 0.83685 0.86144 0.88890 0.90118 0.86695 0.91233 0.90949 0.96647 0.97992 0.94667 0.94821 0.91965 0.81328 0.78210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.53 10.38 113.37 1.18 1.70 16 2 O -0.32 -7.15 10.47 -90.08 -0.94 -8.10 16 3 C 0.31 7.55 7.49 84.80 0.63 8.18 16 4 C -0.15 -3.89 9.61 22.75 0.22 -3.68 16 5 C -0.06 -1.43 5.91 -19.90 -0.12 -1.55 16 6 C 0.58 17.07 8.03 86.88 0.70 17.77 16 7 O -0.57 -20.50 17.24 -3.76 -0.06 -20.56 16 8 N -0.63 -15.95 3.69 -863.02 -3.19 -19.14 16 9 C 0.11 2.61 5.90 83.76 0.49 3.10 16 10 C -0.10 -2.72 1.06 -52.62 -0.06 -2.77 16 11 C 0.13 2.97 8.03 83.66 0.67 3.65 16 12 C -0.10 -3.46 6.41 31.32 0.20 -3.26 16 13 C 0.19 8.66 5.39 86.81 0.47 9.13 16 14 N -0.62 -28.70 3.41 -693.46 -2.36 -31.06 16 15 C -0.23 -12.01 10.28 84.03 0.86 -11.14 16 16 H 0.09 4.21 7.83 -2.91 -0.02 4.19 16 17 C -0.07 -3.58 5.49 84.86 0.47 -3.12 16 18 N -0.95 -55.00 10.30 21.65 0.22 -54.78 16 19 Si 0.97 43.63 29.55 68.60 2.03 45.66 16 20 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 21 H -0.30 -13.89 7.11 99.48 0.71 -13.18 16 22 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 23 C 0.15 5.06 6.70 86.23 0.58 5.64 16 24 C -0.19 -3.81 9.28 22.63 0.21 -3.60 16 25 C 0.14 2.67 11.17 84.62 0.94 3.61 16 26 N -0.53 -11.92 9.18 -309.13 -2.84 -14.76 16 27 H 0.06 0.88 8.10 -2.39 -0.02 0.86 16 28 H 0.06 0.88 8.10 -2.39 -0.02 0.86 16 29 H 0.12 1.10 8.14 -2.38 -0.02 1.08 16 30 H 0.15 3.89 7.76 -2.91 -0.02 3.86 16 31 H 0.12 2.21 8.06 -2.38 -0.02 2.19 16 32 H 0.09 2.13 6.17 -2.39 -0.01 2.12 16 33 H 0.08 1.94 8.13 -2.39 -0.02 1.92 16 34 H 0.12 2.16 8.14 -2.39 -0.02 2.14 16 35 H 0.07 2.20 8.07 -2.38 -0.02 2.18 16 36 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 37 H 0.02 0.79 7.39 -2.39 -0.02 0.77 16 38 H 0.00 0.10 7.49 -2.39 -0.02 0.08 16 39 H 0.24 13.93 8.31 -92.71 -0.77 13.15 16 40 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.06 1.87 8.00 -2.39 -0.02 1.85 16 42 H 0.17 2.98 3.97 -2.91 -0.01 2.97 16 43 H 0.20 2.32 8.06 -2.91 -0.02 2.29 16 Total: -1.00 -70.23 354.30 1.33 -68.90 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: 1.03 Total: 10.17 kcal Atomic # 6 Polarization: 16.22 SS G_CDS: 7.45 Total: 23.67 kcal Atomic # 7 Polarization: -111.57 SS G_CDS: -8.17 Total: -119.74 kcal Atomic # 8 Polarization: -27.65 SS G_CDS: -1.01 Total: -28.65 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Total: -70.23 1.33 -68.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072892452.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.272 kcal (2) G-P(sol) polarization free energy of solvation -70.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds