Wall clock time and date at job start Tue Mar 31 2020 11:13:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34590 * 119.48133 * 2 1 4 4 C 1.37988 * 120.46265 * 179.76914 * 3 2 1 5 5 C 1.47463 * 120.26196 * 180.23147 * 4 3 2 6 6 O 1.21605 * 119.99527 * 6.45085 * 5 4 3 7 7 N 1.34772 * 120.00460 * 186.45580 * 5 4 3 8 8 C 1.47392 * 135.84962 * 5.19348 * 7 5 4 9 9 C 1.52073 * 87.41062 * 154.39041 * 8 7 5 10 10 C 1.47393 * 135.85586 * 185.56302 * 7 5 4 11 11 C 1.53510 * 117.20995 * 267.28071 * 9 8 7 12 12 C 1.54638 * 102.70405 * 262.92669 * 11 9 8 13 13 N 1.47143 * 107.37487 * 339.38718 * 12 11 9 14 14 C 1.36938 * 125.58168 * 179.04258 * 13 12 11 15 15 H 1.07994 * 120.00035 * 180.02562 * 14 13 12 16 16 C 1.38817 * 119.99742 * 0.02562 * 14 13 12 17 17 N 1.31617 * 119.99827 * 0.02562 * 16 14 13 18 18 Si 1.86794 * 119.99839 * 180.02562 * 16 14 13 19 19 H 1.48493 * 109.47428 * 59.99870 * 18 16 14 20 20 H 1.48503 * 109.47009 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.47359 * 299.99639 * 18 16 14 22 22 C 1.47756 * 108.84030 * 359.08609 * 13 12 11 23 23 C 1.41598 * 119.48212 * 0.47629 * 4 3 2 24 24 C 1.35968 * 119.01116 * 359.77706 * 23 4 3 25 25 C 1.34547 * 119.47561 * 180.26654 * 2 1 3 26 26 O 1.21964 * 119.74845 * 359.97438 * 25 2 1 27 27 H 1.09003 * 109.47471 * 179.73303 * 1 2 3 28 28 H 1.08995 * 109.47353 * 59.73009 * 1 2 3 29 29 H 1.09006 * 109.47026 * 299.72800 * 1 2 3 30 30 H 1.08010 * 119.76811 * 0.02562 * 3 2 1 31 31 H 1.09001 * 113.54593 * 268.99996 * 8 7 5 32 32 H 1.08997 * 113.54723 * 39.68331 * 8 7 5 33 33 H 1.08998 * 113.54417 * 320.32350 * 10 7 5 34 34 H 1.09001 * 113.53910 * 91.00208 * 10 7 5 35 35 H 1.09003 * 110.76704 * 21.23132 * 11 9 8 36 36 H 1.09006 * 110.76441 * 144.62584 * 11 9 8 37 37 H 1.08992 * 109.86396 * 98.83862 * 12 11 9 38 38 H 1.09005 * 109.86412 * 219.93601 * 12 11 9 39 39 H 0.97000 * 120.00165 * 180.02562 * 17 16 14 40 40 H 1.09001 * 110.40706 * 263.50059 * 22 13 12 41 41 H 1.08997 * 110.40426 * 141.08092 * 22 13 12 42 42 H 1.08003 * 120.49304 * 179.79590 * 23 4 3 43 43 H 1.07997 * 120.24932 * 180.02562 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1274 1.1716 0.0000 4 6 3.5070 1.1953 0.0048 5 6 4.2282 2.4815 0.0099 6 8 3.6124 3.5233 0.1283 7 7 5.5698 2.5024 -0.1167 8 6 6.6241 1.5035 -0.3679 9 6 7.4609 2.6336 -0.9468 10 6 6.6218 3.5331 -0.0576 11 6 7.3700 2.8698 -2.4609 12 6 8.6057 2.1111 -2.9982 13 7 9.5457 1.9527 -1.8774 14 6 10.7565 1.3158 -1.9368 15 1 11.3768 1.2517 -1.0551 16 6 11.1866 0.7525 -3.1305 17 7 10.4308 0.8311 -4.2051 18 14 12.8378 -0.1169 -3.2114 19 1 12.8466 -1.2528 -2.2550 20 1 13.0620 -0.6265 -4.5881 21 1 13.9181 0.8380 -2.8557 22 6 8.9689 2.5925 -0.6769 23 6 4.2249 -0.0252 -0.0005 24 6 3.5344 -1.1965 -0.0056 25 6 2.1270 -1.1713 -0.0054 26 8 1.5030 -2.2192 -0.0099 27 1 -0.3634 -1.0277 -0.0048 28 1 -0.3634 0.5180 -0.8875 29 1 -0.3633 0.5096 0.8925 30 1 1.5751 2.0999 0.0004 31 1 7.0427 1.0739 0.5422 32 1 6.3424 0.7483 -1.1016 33 1 6.3382 4.4724 -0.5321 34 1 7.0398 3.6719 0.9395 35 1 6.4505 2.4452 -2.8638 36 1 7.4392 3.9331 -2.6910 37 1 8.3058 1.1320 -3.3713 38 1 9.0749 2.6859 -3.7968 39 1 10.7311 0.4373 -5.0391 40 1 9.3616 3.6024 -0.5586 41 1 9.1800 1.9955 0.2104 42 1 5.3050 -0.0258 -0.0002 43 1 4.0617 -2.1389 -0.0093 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001072894079.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:27 Heat of formation + Delta-G solvation = 48.727939 kcal Electronic energy + Delta-G solvation = -26469.863722 eV Core-core repulsion = 22711.516661 eV Total energy + Delta-G solvation = -3758.347061 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.78913 -40.70293 -38.48379 -36.99177 -35.76459 -34.97712 -32.25272 -30.53322 -29.57796 -28.84021 -28.05423 -26.23624 -25.96188 -24.36554 -23.57486 -23.12387 -20.40189 -20.03387 -18.62345 -17.88758 -17.57597 -17.18296 -16.65596 -16.46875 -15.88853 -15.67499 -15.52035 -14.80649 -14.52717 -14.40623 -13.96824 -13.71009 -13.66437 -13.50145 -13.05976 -12.93547 -12.57628 -12.34700 -12.21763 -11.95589 -11.90416 -11.85207 -11.04509 -10.94966 -10.71580 -10.51260 -10.46014 -10.30314 -10.27691 -10.16982 -9.93639 -9.71531 -9.65829 -8.71132 -8.63479 -8.25357 -6.88500 -5.75108 -3.09109 0.48235 1.11603 2.15137 2.81591 2.87032 3.38349 3.43079 3.44282 3.50021 4.17824 4.24980 4.41241 4.48296 4.54020 4.62265 4.76677 4.77793 4.88486 4.94740 5.18863 5.21470 5.39329 5.46141 5.54027 5.55951 5.61287 5.66415 5.74546 5.75882 5.84364 5.90754 6.08166 6.12940 6.18750 6.41045 6.46782 6.60107 6.62157 6.65498 7.51187 7.56887 7.63341 7.72454 7.78362 8.10410 8.20744 9.17427 9.77524 10.42604 11.36277 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.017884 B = 0.003155 C = 0.002827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.269421 B = 8872.255771 C = 9903.505822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 N -0.493 5.493 3 C 0.204 3.796 4 C -0.241 4.241 5 C 0.604 3.396 6 O -0.554 6.554 7 N -0.637 5.637 8 C 0.110 3.890 9 C -0.105 4.105 10 C 0.122 3.878 11 C -0.117 4.117 12 C 0.179 3.821 13 N -0.604 5.604 14 C -0.230 4.230 15 H 0.078 0.922 16 C -0.006 4.006 17 N -0.921 5.921 18 Si 0.912 3.088 19 H -0.285 1.285 20 H -0.291 1.291 21 H -0.285 1.285 22 C 0.153 3.847 23 C -0.006 4.006 24 C -0.244 4.244 25 C 0.515 3.485 26 O -0.546 6.546 27 H 0.106 0.894 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.178 0.822 31 H 0.091 0.909 32 H 0.086 0.914 33 H 0.080 0.920 34 H 0.087 0.913 35 H 0.061 0.939 36 H 0.064 0.936 37 H 0.047 0.953 38 H 0.044 0.956 39 H 0.253 0.747 40 H 0.027 0.973 41 H 0.043 0.957 42 H 0.151 0.849 43 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.322 2.111 9.064 18.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 N -0.201 5.201 3 C 0.071 3.929 4 C -0.250 4.250 5 C 0.395 3.605 6 O -0.435 6.435 7 N -0.371 5.371 8 C -0.012 4.012 9 C -0.106 4.106 10 C 0.000 4.000 11 C -0.155 4.155 12 C 0.054 3.946 13 N -0.331 5.331 14 C -0.358 4.358 15 H 0.096 0.904 16 C -0.203 4.203 17 N -0.569 5.569 18 Si 0.742 3.258 19 H -0.211 1.211 20 H -0.216 1.216 21 H -0.212 1.212 22 C 0.027 3.973 23 C -0.027 4.027 24 C -0.265 4.265 25 C 0.317 3.683 26 O -0.428 6.428 27 H 0.125 0.875 28 H 0.102 0.898 29 H 0.102 0.898 30 H 0.196 0.804 31 H 0.109 0.891 32 H 0.105 0.895 33 H 0.098 0.902 34 H 0.105 0.895 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.065 0.935 38 H 0.062 0.938 39 H 0.063 0.937 40 H 0.045 0.955 41 H 0.061 0.939 42 H 0.168 0.832 43 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -17.209 1.812 8.964 19.488 hybrid contribution 0.957 -0.460 -0.112 1.068 sum -16.252 1.352 8.852 18.555 Atomic orbital electron populations 1.22331 0.76561 1.06678 1.03749 1.45175 1.09869 1.06834 1.58216 1.22208 0.92880 0.89954 0.87844 1.19381 0.92234 0.94436 1.18905 1.17055 0.79906 0.87599 0.75928 1.90770 1.66332 1.33971 1.52395 1.49547 1.03420 1.13743 1.70372 1.23097 0.84347 0.93667 1.00082 1.22197 0.96452 0.94998 0.96990 1.22798 0.83794 0.93559 0.99858 1.22476 1.00495 1.00900 0.91665 1.21231 0.85746 0.97745 0.89837 1.44530 1.18736 1.64927 1.04916 1.18989 0.93028 1.27945 0.95876 0.90436 1.24794 0.98666 1.01057 0.95777 1.69943 1.36964 1.49551 1.00400 0.86211 0.83426 0.79449 0.76719 1.21149 1.21643 1.21194 1.21140 0.88040 0.96525 0.91634 1.22074 1.01969 0.90874 0.87823 1.22038 0.92118 1.00348 1.12014 1.17340 0.89617 0.82585 0.78725 1.90927 1.69497 1.29944 1.52424 0.87509 0.89750 0.89792 0.80449 0.89083 0.89546 0.90194 0.89533 0.92064 0.91711 0.93492 0.93790 0.93667 0.95503 0.93889 0.83161 0.82660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.30 10.55 59.85 0.63 0.93 16 2 N -0.49 -4.77 2.95 -126.73 -0.37 -5.14 16 3 C 0.20 1.93 9.91 -16.43 -0.16 1.77 16 4 C -0.24 -2.76 5.88 -104.95 -0.62 -3.38 16 5 C 0.60 8.31 8.00 -12.50 -0.10 8.21 16 6 O -0.55 -8.99 17.11 5.27 0.09 -8.90 16 7 N -0.64 -8.41 3.68 -186.97 -0.69 -9.09 16 8 C 0.11 1.42 5.44 -7.32 -0.04 1.38 16 9 C -0.10 -1.56 1.06 -155.22 -0.16 -1.72 16 10 C 0.12 1.56 8.03 -7.47 -0.06 1.50 16 11 C -0.12 -1.99 6.40 -25.61 -0.16 -2.16 16 12 C 0.18 4.03 5.39 -2.83 -0.02 4.01 16 13 N -0.60 -14.15 3.41 -170.54 -0.58 -14.73 16 14 C -0.23 -6.03 10.28 -15.06 -0.15 -6.18 16 15 H 0.08 1.95 7.83 -52.49 -0.41 1.54 16 16 C -0.01 -0.18 5.49 -17.43 -0.10 -0.27 16 17 N -0.92 -26.01 10.30 55.49 0.57 -25.44 16 18 Si 0.91 21.32 29.55 -169.99 -5.02 16.30 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 21 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 22 C 0.15 2.74 6.70 -3.22 -0.02 2.72 16 23 C -0.01 -0.07 9.16 -39.12 -0.36 -0.43 16 24 C -0.24 -2.81 9.97 -39.45 -0.39 -3.20 16 25 C 0.51 6.50 7.40 -15.41 -0.11 6.38 16 26 O -0.55 -8.49 16.33 4.95 0.08 -8.41 16 27 H 0.11 0.81 6.83 -51.93 -0.35 0.45 16 28 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.18 1.31 7.61 -52.48 -0.40 0.91 16 31 H 0.09 1.03 8.04 -51.93 -0.42 0.61 16 32 H 0.09 1.13 6.79 -51.93 -0.35 0.78 16 33 H 0.08 1.04 8.13 -51.93 -0.42 0.61 16 34 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 35 H 0.06 1.00 8.07 -51.93 -0.42 0.58 16 36 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.05 1.18 7.38 -51.93 -0.38 0.79 16 38 H 0.04 1.12 7.49 -51.93 -0.39 0.73 16 39 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 40 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.04 0.73 8.00 -51.93 -0.42 0.31 16 42 H 0.15 1.54 4.23 -52.48 -0.22 1.32 16 43 H 0.16 1.64 8.06 -52.49 -0.42 1.22 16 LS Contribution 351.80 15.07 5.30 5.30 Total: -1.00 -33.52 351.80 -8.31 -41.83 By element: Atomic # 1 Polarization: 4.59 SS G_CDS: -5.86 Total: -1.27 kcal Atomic # 6 Polarization: 11.38 SS G_CDS: -1.83 Total: 9.55 kcal Atomic # 7 Polarization: -53.34 SS G_CDS: -1.07 Total: -54.41 kcal Atomic # 8 Polarization: -17.47 SS G_CDS: 0.17 Total: -17.30 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -33.52 -8.31 -41.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072894079.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.555 kcal (2) G-P(sol) polarization free energy of solvation -33.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.827 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds