Wall clock time and date at job start Tue Mar 31 2020 11:13:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34590 * 119.48133 * 2 1 4 4 C 1.37988 * 120.46265 * 179.76914 * 3 2 1 5 5 C 1.47463 * 120.26196 * 180.23147 * 4 3 2 6 6 O 1.21605 * 119.99527 * 6.45085 * 5 4 3 7 7 N 1.34772 * 120.00460 * 186.45580 * 5 4 3 8 8 C 1.47392 * 135.84962 * 5.19348 * 7 5 4 9 9 C 1.52073 * 87.41062 * 154.39041 * 8 7 5 10 10 C 1.47393 * 135.85586 * 185.56302 * 7 5 4 11 11 C 1.53510 * 117.20995 * 267.28071 * 9 8 7 12 12 C 1.54638 * 102.70405 * 262.92669 * 11 9 8 13 13 N 1.47143 * 107.37487 * 339.38718 * 12 11 9 14 14 C 1.36938 * 125.58168 * 179.04258 * 13 12 11 15 15 H 1.07994 * 120.00035 * 180.02562 * 14 13 12 16 16 C 1.38817 * 119.99742 * 0.02562 * 14 13 12 17 17 N 1.31617 * 119.99827 * 0.02562 * 16 14 13 18 18 Si 1.86794 * 119.99839 * 180.02562 * 16 14 13 19 19 H 1.48493 * 109.47428 * 59.99870 * 18 16 14 20 20 H 1.48503 * 109.47009 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.47359 * 299.99639 * 18 16 14 22 22 C 1.47756 * 108.84030 * 359.08609 * 13 12 11 23 23 C 1.41598 * 119.48212 * 0.47629 * 4 3 2 24 24 C 1.35968 * 119.01116 * 359.77706 * 23 4 3 25 25 C 1.34547 * 119.47561 * 180.26654 * 2 1 3 26 26 O 1.21964 * 119.74845 * 359.97438 * 25 2 1 27 27 H 1.09003 * 109.47471 * 179.73303 * 1 2 3 28 28 H 1.08995 * 109.47353 * 59.73009 * 1 2 3 29 29 H 1.09006 * 109.47026 * 299.72800 * 1 2 3 30 30 H 1.08010 * 119.76811 * 0.02562 * 3 2 1 31 31 H 1.09001 * 113.54593 * 268.99996 * 8 7 5 32 32 H 1.08997 * 113.54723 * 39.68331 * 8 7 5 33 33 H 1.08998 * 113.54417 * 320.32350 * 10 7 5 34 34 H 1.09001 * 113.53910 * 91.00208 * 10 7 5 35 35 H 1.09003 * 110.76704 * 21.23132 * 11 9 8 36 36 H 1.09006 * 110.76441 * 144.62584 * 11 9 8 37 37 H 1.08992 * 109.86396 * 98.83862 * 12 11 9 38 38 H 1.09005 * 109.86412 * 219.93601 * 12 11 9 39 39 H 0.97000 * 120.00165 * 180.02562 * 17 16 14 40 40 H 1.09001 * 110.40706 * 263.50059 * 22 13 12 41 41 H 1.08997 * 110.40426 * 141.08092 * 22 13 12 42 42 H 1.08003 * 120.49304 * 179.79590 * 23 4 3 43 43 H 1.07997 * 120.24932 * 180.02562 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1274 1.1716 0.0000 4 6 3.5070 1.1953 0.0048 5 6 4.2282 2.4815 0.0099 6 8 3.6124 3.5233 0.1283 7 7 5.5698 2.5024 -0.1167 8 6 6.6241 1.5035 -0.3679 9 6 7.4609 2.6336 -0.9468 10 6 6.6218 3.5331 -0.0576 11 6 7.3700 2.8698 -2.4609 12 6 8.6057 2.1111 -2.9982 13 7 9.5457 1.9527 -1.8774 14 6 10.7565 1.3158 -1.9368 15 1 11.3768 1.2517 -1.0551 16 6 11.1866 0.7525 -3.1305 17 7 10.4308 0.8311 -4.2051 18 14 12.8378 -0.1169 -3.2114 19 1 12.8466 -1.2528 -2.2550 20 1 13.0620 -0.6265 -4.5881 21 1 13.9181 0.8380 -2.8557 22 6 8.9689 2.5925 -0.6769 23 6 4.2249 -0.0252 -0.0005 24 6 3.5344 -1.1965 -0.0056 25 6 2.1270 -1.1713 -0.0054 26 8 1.5030 -2.2192 -0.0099 27 1 -0.3634 -1.0277 -0.0048 28 1 -0.3634 0.5180 -0.8875 29 1 -0.3633 0.5096 0.8925 30 1 1.5751 2.0999 0.0004 31 1 7.0427 1.0739 0.5422 32 1 6.3424 0.7483 -1.1016 33 1 6.3382 4.4724 -0.5321 34 1 7.0398 3.6719 0.9395 35 1 6.4505 2.4452 -2.8638 36 1 7.4392 3.9331 -2.6910 37 1 8.3058 1.1320 -3.3713 38 1 9.0749 2.6859 -3.7968 39 1 10.7311 0.4373 -5.0391 40 1 9.3616 3.6024 -0.5586 41 1 9.1800 1.9955 0.2104 42 1 5.3050 -0.0258 -0.0002 43 1 4.0617 -2.1389 -0.0093 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001072894079.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:26 Heat of formation + Delta-G solvation = 27.060445 kcal Electronic energy + Delta-G solvation = -26470.803295 eV Core-core repulsion = 22711.516661 eV Total energy + Delta-G solvation = -3759.286635 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.67628 -41.82123 -39.63533 -37.99306 -37.28122 -35.82148 -34.03490 -31.62518 -30.98958 -30.18727 -28.85338 -27.46184 -27.20070 -25.77146 -24.71049 -24.05921 -22.10009 -21.11053 -19.87232 -18.76791 -18.66301 -18.49274 -17.94772 -17.28791 -17.01323 -16.69168 -16.62348 -16.49940 -15.83084 -15.59436 -15.34540 -14.91175 -14.50104 -14.37273 -14.24333 -13.92431 -13.72057 -13.65745 -13.47660 -13.28727 -13.09845 -12.83698 -12.72794 -12.69222 -12.19433 -12.04729 -11.88482 -11.77310 -11.64765 -11.34383 -11.24394 -11.11945 -10.87397 -10.62644 -9.76845 -9.15402 -8.81157 -7.78159 -5.12300 -0.32072 0.18007 1.36697 1.51371 1.53225 1.59261 1.83521 1.87504 2.55078 2.59644 3.21951 3.36474 3.47396 3.51799 3.62330 3.67575 3.72426 3.89885 4.01872 4.11167 4.26267 4.28555 4.38654 4.48028 4.54267 4.61922 4.71557 4.73960 4.74486 4.87415 4.88399 4.92032 5.01317 5.03155 5.09939 5.22195 5.25194 5.30259 5.54461 5.72666 5.77184 5.84747 6.26225 6.68268 6.72702 7.06844 7.17290 7.85517 8.49238 9.31915 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.017884 B = 0.003155 C = 0.002827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.269421 B = 8872.255771 C = 9903.505822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.487 5.487 3 C 0.227 3.773 4 C -0.260 4.260 5 C 0.606 3.394 6 O -0.581 6.581 7 N -0.638 5.638 8 C 0.115 3.885 9 C -0.101 4.101 10 C 0.131 3.869 11 C -0.102 4.102 12 C 0.189 3.811 13 N -0.625 5.625 14 C -0.233 4.233 15 H 0.087 0.913 16 C -0.067 4.067 17 N -0.952 5.952 18 Si 0.973 3.027 19 H -0.276 1.276 20 H -0.301 1.301 21 H -0.279 1.279 22 C 0.151 3.849 23 C 0.006 3.994 24 C -0.261 4.261 25 C 0.505 3.495 26 O -0.585 6.585 27 H 0.091 0.909 28 H 0.109 0.891 29 H 0.112 0.888 30 H 0.206 0.794 31 H 0.115 0.885 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.113 0.887 35 H 0.069 0.931 36 H 0.073 0.927 37 H 0.012 0.988 38 H 0.002 0.998 39 H 0.244 0.756 40 H 0.035 0.965 41 H 0.060 0.940 42 H 0.157 0.843 43 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.265 3.102 11.058 20.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 N -0.192 5.192 3 C 0.093 3.907 4 C -0.268 4.268 5 C 0.398 3.602 6 O -0.463 6.463 7 N -0.371 5.371 8 C -0.007 4.007 9 C -0.103 4.103 10 C 0.009 3.991 11 C -0.140 4.140 12 C 0.064 3.936 13 N -0.352 5.352 14 C -0.363 4.363 15 H 0.105 0.895 16 C -0.260 4.260 17 N -0.602 5.602 18 Si 0.802 3.198 19 H -0.202 1.202 20 H -0.227 1.227 21 H -0.205 1.205 22 C 0.026 3.974 23 C -0.015 4.015 24 C -0.283 4.283 25 C 0.310 3.690 26 O -0.471 6.471 27 H 0.109 0.891 28 H 0.128 0.872 29 H 0.130 0.870 30 H 0.222 0.778 31 H 0.133 0.867 32 H 0.101 0.899 33 H 0.099 0.901 34 H 0.131 0.869 35 H 0.088 0.912 36 H 0.092 0.908 37 H 0.030 0.970 38 H 0.020 0.980 39 H 0.053 0.947 40 H 0.052 0.948 41 H 0.078 0.922 42 H 0.175 0.825 43 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -18.161 2.829 11.003 21.422 hybrid contribution 1.219 -0.684 -0.707 1.566 sum -16.942 2.145 10.296 19.941 Atomic orbital electron populations 1.22642 0.74272 1.06534 1.06442 1.45277 1.11356 1.06136 1.56471 1.22551 0.92488 0.90482 0.85196 1.19305 0.93079 0.93558 1.20897 1.17234 0.79812 0.87833 0.75295 1.90758 1.66742 1.34971 1.53864 1.49505 1.03507 1.13872 1.70191 1.23149 0.83695 0.92966 1.00900 1.22016 0.95014 0.97586 0.95635 1.22812 0.82851 0.92953 1.00509 1.22254 0.97880 1.00529 0.93354 1.20917 0.87520 0.95938 0.89241 1.44815 1.18356 1.64926 1.07069 1.19422 0.94100 1.26817 0.95923 0.89525 1.25575 1.01915 1.02708 0.95808 1.70173 1.38467 1.50984 1.00565 0.85233 0.79913 0.78603 0.76076 1.20168 1.22742 1.20545 1.21322 0.89606 0.96446 0.90038 1.22078 1.02219 0.90488 0.86687 1.22054 0.91989 1.00825 1.13405 1.17526 0.90025 0.82906 0.78582 1.90905 1.70241 1.31359 1.54565 0.89064 0.87218 0.86969 0.77761 0.86705 0.89893 0.90071 0.86904 0.91232 0.90824 0.96993 0.97990 0.94705 0.94762 0.92218 0.82534 0.82471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.41 10.55 127.77 1.35 1.75 16 2 N -0.49 -8.39 2.95 -673.10 -1.99 -10.38 16 3 C 0.23 3.64 9.91 84.21 0.83 4.47 16 4 C -0.26 -5.35 5.88 -20.08 -0.12 -5.46 16 5 C 0.61 15.01 8.00 86.67 0.69 15.70 16 6 O -0.58 -17.24 17.11 -4.05 -0.07 -17.31 16 7 N -0.64 -14.93 3.68 -863.71 -3.18 -18.10 16 8 C 0.11 2.65 5.44 83.77 0.46 3.10 16 9 C -0.10 -2.77 1.06 -52.62 -0.06 -2.83 16 10 C 0.13 2.90 8.03 83.67 0.67 3.57 16 11 C -0.10 -3.39 6.40 31.32 0.20 -3.19 16 12 C 0.19 8.73 5.39 86.81 0.47 9.20 16 13 N -0.63 -29.20 3.41 -693.45 -2.36 -31.57 16 14 C -0.23 -12.22 10.28 84.03 0.86 -11.36 16 15 H 0.09 4.26 7.83 -2.91 -0.02 4.24 16 16 C -0.07 -3.68 5.49 84.86 0.47 -3.22 16 17 N -0.95 -55.81 10.30 21.65 0.22 -55.59 16 18 Si 0.97 44.33 29.55 68.60 2.03 46.36 16 19 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 20 H -0.30 -14.08 7.11 99.48 0.71 -13.38 16 21 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 22 C 0.15 5.09 6.70 86.22 0.58 5.67 16 23 C 0.01 0.13 9.16 22.57 0.21 0.34 16 24 C -0.26 -5.85 9.97 22.36 0.22 -5.63 16 25 C 0.51 12.40 7.40 84.89 0.63 13.02 16 26 O -0.59 -18.32 16.33 -5.20 -0.08 -18.41 16 27 H 0.09 1.28 6.83 -2.39 -0.02 1.26 16 28 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.11 0.52 8.14 -2.38 -0.02 0.50 16 30 H 0.21 2.21 7.61 -2.91 -0.02 2.18 16 31 H 0.12 2.17 8.04 -2.39 -0.02 2.15 16 32 H 0.08 2.02 6.79 -2.39 -0.02 2.00 16 33 H 0.08 1.83 8.13 -2.39 -0.02 1.81 16 34 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 35 H 0.07 2.20 8.07 -2.39 -0.02 2.18 16 36 H 0.07 2.31 8.14 -2.38 -0.02 2.29 16 37 H 0.01 0.62 7.38 -2.39 -0.02 0.60 16 38 H 0.00 0.10 7.49 -2.38 -0.02 0.08 16 39 H 0.24 14.11 8.31 -92.71 -0.77 13.33 16 40 H 0.03 1.13 8.14 -2.39 -0.02 1.12 16 41 H 0.06 1.83 8.00 -2.39 -0.02 1.81 16 42 H 0.16 2.91 4.23 -2.91 -0.01 2.89 16 43 H 0.16 3.33 8.06 -2.91 -0.02 3.31 16 Total: -1.00 -74.91 351.80 3.06 -71.85 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: 1.03 Total: 7.99 kcal Atomic # 6 Polarization: 17.68 SS G_CDS: 7.46 Total: 25.15 kcal Atomic # 7 Polarization: -108.33 SS G_CDS: -7.30 Total: -115.64 kcal Atomic # 8 Polarization: -35.56 SS G_CDS: -0.15 Total: -35.71 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Total: -74.91 3.06 -71.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072894079.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.914 kcal (2) G-P(sol) polarization free energy of solvation -74.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.854 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds