Wall clock time and date at job start Tue Mar 31 2020 11:13:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.36948 * 119.70725 * 2 1 4 4 C 1.47884 * 119.75510 * 359.97438 * 3 2 1 5 5 O 1.21542 * 120.00251 * 321.03445 * 4 3 2 6 6 N 1.34783 * 120.00029 * 141.03391 * 4 3 2 7 7 C 1.47883 * 134.34295 * 174.81144 * 6 4 3 8 8 C 1.52373 * 85.59068 * 156.51530 * 7 6 4 9 9 C 1.47889 * 134.34135 * 354.81320 * 6 4 3 10 10 C 1.53656 * 116.38803 * 141.36028 * 8 7 6 11 11 C 1.54597 * 102.73093 * 95.49205 * 10 8 7 12 12 N 1.47143 * 107.36732 * 20.75174 * 11 10 8 13 13 C 1.36936 * 125.58707 * 180.67069 * 12 11 10 14 14 H 1.08000 * 119.99902 * 180.02562 * 13 12 11 15 15 C 1.38812 * 119.99907 * 0.02562 * 13 12 11 16 16 N 1.31617 * 120.00322 * 0.02562 * 15 13 12 17 17 Si 1.86806 * 119.99922 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47027 * 89.99890 * 17 15 13 19 19 H 1.48497 * 109.47259 * 210.00322 * 17 15 13 20 20 H 1.48503 * 109.46939 * 330.00157 * 17 15 13 21 21 C 1.47723 * 108.82373 * 0.93165 * 12 11 10 22 22 C 1.36297 * 120.49152 * 180.27212 * 3 2 1 23 23 C 1.40412 * 119.90107 * 359.48525 * 22 3 2 24 24 C 1.36105 * 119.41754 * 0.49050 * 23 22 3 25 25 C 1.34671 * 119.70335 * 179.97438 * 2 1 3 26 26 O 1.21961 * 119.95828 * 359.97438 * 25 2 1 27 27 H 1.08998 * 109.47018 * 87.84950 * 1 2 3 28 28 H 1.08995 * 109.47365 * 207.85540 * 1 2 3 29 29 H 1.09007 * 109.47005 * 327.85537 * 1 2 3 30 30 H 1.09003 * 113.85138 * 42.35131 * 7 6 4 31 31 H 1.08993 * 113.97282 * 270.70002 * 7 6 4 32 32 H 1.09004 * 113.84855 * 89.31845 * 9 6 4 33 33 H 1.08998 * 113.85255 * 317.65804 * 9 6 4 34 34 H 1.08992 * 110.75822 * 337.18037 * 10 8 7 35 35 H 1.09000 * 110.75749 * 213.80137 * 10 8 7 36 36 H 1.09001 * 109.86736 * 261.30781 * 11 10 8 37 37 H 1.08998 * 109.98684 * 140.26349 * 11 10 8 38 38 H 0.96999 * 120.00524 * 179.97438 * 16 15 13 39 39 H 1.08997 * 110.39768 * 96.33618 * 21 12 11 40 40 H 1.09004 * 110.39782 * 218.74917 * 21 12 11 41 41 H 1.08000 * 120.04904 * 179.69965 * 22 3 2 42 42 H 1.08000 * 120.29098 * 180.22419 * 23 22 3 43 43 H 1.08001 * 120.24457 * 179.74063 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1436 1.1895 0.0000 4 6 1.3922 2.4632 -0.0006 5 8 0.3788 2.5707 -0.6629 6 7 1.8312 3.5050 0.7334 7 6 1.4036 4.9119 0.8903 8 6 2.0966 4.8482 2.2458 9 6 2.9321 3.6958 1.7023 10 6 2.8665 6.1054 2.6790 11 6 1.8352 6.8510 3.5568 12 7 0.8373 5.8633 3.9968 13 6 -0.2525 6.1273 4.7828 14 1 -0.9294 5.3303 5.0529 15 6 -0.4871 7.4195 5.2325 16 7 0.3375 8.3910 4.9030 17 14 -1.9734 7.7796 6.3054 18 1 -1.6039 7.6153 7.7343 19 1 -2.4287 9.1731 6.0689 20 1 -3.0691 6.8365 5.9659 21 6 1.2072 4.5389 3.4569 22 6 3.5064 1.2082 -0.0056 23 6 4.2230 0.0007 -0.0004 24 6 3.5446 -1.1793 -0.0001 25 6 2.1322 -1.1698 0.0005 26 8 1.5162 -2.2224 0.0015 27 1 -0.3633 0.0386 -1.0269 28 1 -0.3634 -0.9085 0.4801 29 1 -0.3633 0.8702 0.5468 30 1 0.3229 5.0398 0.9533 31 1 1.8738 5.5987 0.1867 32 1 3.8712 4.0090 1.2462 33 1 3.0513 2.8690 2.4025 34 1 3.1431 6.7065 1.8129 35 1 3.7477 5.8371 3.2618 36 1 1.3496 7.6337 2.9739 37 1 2.3306 7.2883 4.4236 38 1 0.1733 9.2940 5.2169 39 1 1.7627 3.9673 4.2002 40 1 0.3164 3.9936 3.1447 41 1 4.0344 2.1503 -0.0104 42 1 5.3030 0.0081 -0.0012 43 1 4.0824 -2.1159 -0.0004 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001072969878.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:29 Heat of formation + Delta-G solvation = 44.056636 kcal Electronic energy + Delta-G solvation = -26776.516353 eV Core-core repulsion = 23017.966729 eV Total energy + Delta-G solvation = -3758.549624 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.78822 -40.58248 -38.60435 -36.89813 -35.84356 -34.74020 -32.43451 -31.02580 -29.58495 -28.39884 -27.81693 -26.50808 -26.05642 -24.75332 -23.54968 -22.84248 -20.50460 -20.08984 -18.52570 -17.73768 -17.65440 -17.36710 -16.84581 -16.60730 -15.99335 -15.51067 -15.36725 -14.92773 -14.81445 -14.49964 -13.96879 -13.80871 -13.36779 -13.28631 -12.92153 -12.78594 -12.68535 -12.34885 -12.27567 -12.01806 -11.94714 -11.87526 -11.22785 -10.99750 -10.82784 -10.69965 -10.52342 -10.39904 -10.22682 -10.14431 -9.99687 -9.78402 -9.73198 -8.85647 -8.66704 -8.31476 -6.92439 -5.78598 -3.12447 0.21657 1.39896 2.02110 2.49437 2.75554 3.35839 3.36434 3.42273 3.43557 3.79365 4.30435 4.36992 4.51550 4.54592 4.77580 4.80091 4.90506 5.00530 5.18501 5.23867 5.25642 5.30848 5.43118 5.51324 5.54473 5.56241 5.57668 5.67814 5.70331 5.80783 5.85724 6.01223 6.09046 6.09340 6.35021 6.36910 6.53758 6.58361 6.74360 7.41388 7.47744 7.51227 7.69621 7.74976 7.77902 8.17454 9.14622 9.74122 10.38332 11.32960 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.021158 B = 0.003146 C = 0.002959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.067720 B = 8897.129162 C = 9461.055895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.478 5.478 3 C 0.133 3.867 4 C 0.571 3.429 5 O -0.524 6.524 6 N -0.624 5.624 7 C 0.134 3.866 8 C -0.105 4.105 9 C 0.111 3.889 10 C -0.130 4.130 11 C 0.177 3.823 12 N -0.604 5.604 13 C -0.230 4.230 14 H 0.077 0.923 15 C -0.006 4.006 16 N -0.921 5.921 17 Si 0.911 3.089 18 H -0.288 1.288 19 H -0.290 1.290 20 H -0.281 1.281 21 C 0.161 3.839 22 C -0.188 4.188 23 C -0.024 4.024 24 C -0.223 4.223 25 C 0.514 3.486 26 O -0.549 6.549 27 H 0.082 0.918 28 H 0.092 0.908 29 H 0.089 0.911 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.094 0.906 33 H 0.087 0.913 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.047 0.953 37 H 0.045 0.955 38 H 0.253 0.747 39 H 0.025 0.975 40 H 0.040 0.960 41 H 0.150 0.850 42 H 0.143 0.857 43 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.164 -11.191 -9.980 18.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.190 5.190 3 C 0.021 3.979 4 C 0.358 3.642 5 O -0.401 6.401 6 N -0.358 5.358 7 C 0.013 3.987 8 C -0.106 4.106 9 C -0.012 4.012 10 C -0.169 4.169 11 C 0.053 3.947 12 N -0.331 5.331 13 C -0.358 4.358 14 H 0.095 0.905 15 C -0.202 4.202 16 N -0.569 5.569 17 Si 0.742 3.258 18 H -0.216 1.216 19 H -0.216 1.216 20 H -0.207 1.207 21 C 0.035 3.965 22 C -0.212 4.212 23 C -0.045 4.045 24 C -0.245 4.245 25 C 0.315 3.685 26 O -0.431 6.431 27 H 0.100 0.900 28 H 0.111 0.889 29 H 0.108 0.892 30 H 0.110 0.890 31 H 0.109 0.891 32 H 0.112 0.888 33 H 0.106 0.894 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.066 0.934 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.043 0.957 40 H 0.058 0.942 41 H 0.168 0.832 42 H 0.161 0.839 43 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 9.949 -11.775 -10.341 18.563 hybrid contribution -0.596 0.327 0.513 0.851 sum 9.353 -11.449 -9.829 17.753 Atomic orbital electron populations 1.22263 0.76170 1.04868 1.04670 1.45450 1.09815 1.05225 1.58507 1.20253 0.92737 0.86437 0.98443 1.17504 0.84461 0.82513 0.79707 1.90859 1.24017 1.82995 1.42242 1.50158 1.33006 1.10903 1.41718 1.23109 1.02366 0.78666 0.94570 1.22479 0.96910 0.95801 0.95450 1.23302 0.91036 0.98052 0.88765 1.22675 0.98939 0.95012 1.00258 1.21228 0.87549 0.90504 0.95464 1.44544 1.27489 1.02011 1.59032 1.19035 1.00240 0.93786 1.22772 0.90483 1.24780 0.98951 0.95729 1.00739 1.69942 1.37484 1.00349 1.49105 0.86127 0.82079 0.77375 0.80229 1.21565 1.21631 1.20677 1.21049 0.95050 0.89853 0.90566 1.20911 0.90947 1.00289 1.09101 1.21405 1.00998 0.91353 0.90756 1.22363 0.92559 1.00336 1.09262 1.17326 0.89324 0.82409 0.79454 1.90943 1.69999 1.29078 1.53093 0.89957 0.88907 0.89217 0.89015 0.89124 0.88842 0.89430 0.91565 0.91510 0.93437 0.93650 0.93696 0.95714 0.94223 0.83224 0.83918 0.82938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.76 9.14 59.84 0.55 1.31 16 2 N -0.48 -6.16 3.02 -122.81 -0.37 -6.53 16 3 C 0.13 1.54 6.44 -82.33 -0.53 1.01 16 4 C 0.57 7.72 6.89 -12.31 -0.08 7.64 16 5 O -0.52 -8.69 15.59 5.33 0.08 -8.61 16 6 N -0.62 -7.69 3.57 -188.04 -0.67 -8.36 16 7 C 0.13 1.81 8.15 -3.60 -0.03 1.78 16 8 C -0.10 -1.46 0.99 -154.85 -0.15 -1.61 16 9 C 0.11 1.11 6.32 -3.60 -0.02 1.08 16 10 C -0.13 -1.93 6.36 -25.55 -0.16 -2.09 16 11 C 0.18 3.84 5.40 -2.85 -0.02 3.83 16 12 N -0.60 -14.23 3.41 -170.50 -0.58 -14.81 16 13 C -0.23 -6.14 10.28 -15.06 -0.15 -6.29 16 14 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 15 C -0.01 -0.15 5.49 -17.43 -0.10 -0.25 16 16 N -0.92 -25.85 10.30 55.49 0.57 -25.28 16 17 Si 0.91 21.53 29.55 -169.99 -5.02 16.51 16 18 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 19 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 21 C 0.16 2.97 6.63 -3.16 -0.02 2.95 16 22 C -0.19 -1.60 8.84 -39.46 -0.35 -1.95 16 23 C -0.02 -0.17 10.08 -39.53 -0.40 -0.57 16 24 C -0.22 -2.18 10.00 -39.21 -0.39 -2.57 16 25 C 0.51 6.90 7.43 -15.16 -0.11 6.79 16 26 O -0.55 -9.14 16.61 4.95 0.08 -9.06 16 27 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.09 1.12 7.33 -51.93 -0.38 0.74 16 29 H 0.09 1.16 6.38 -51.92 -0.33 0.83 16 30 H 0.09 1.48 8.12 -51.93 -0.42 1.05 16 31 H 0.09 1.05 8.04 -51.93 -0.42 0.64 16 32 H 0.09 0.66 7.90 -51.93 -0.41 0.25 16 33 H 0.09 0.81 8.12 -51.93 -0.42 0.39 16 34 H 0.07 0.85 7.99 -51.93 -0.41 0.44 16 35 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 36 H 0.05 1.16 7.40 -51.93 -0.38 0.77 16 37 H 0.05 1.11 7.47 -51.93 -0.39 0.73 16 38 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 39 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.04 0.76 8.07 -51.93 -0.42 0.35 16 41 H 0.15 0.95 6.78 -52.49 -0.36 0.59 16 42 H 0.14 0.54 8.06 -52.49 -0.42 0.12 16 43 H 0.15 1.22 8.06 -52.49 -0.42 0.80 16 LS Contribution 352.06 15.07 5.31 5.31 Total: -1.00 -33.28 352.06 -8.58 -41.87 By element: Atomic # 1 Polarization: 3.91 SS G_CDS: -6.00 Total: -2.10 kcal Atomic # 6 Polarization: 13.03 SS G_CDS: -1.97 Total: 11.06 kcal Atomic # 7 Polarization: -53.93 SS G_CDS: -1.05 Total: -54.98 kcal Atomic # 8 Polarization: -17.83 SS G_CDS: 0.17 Total: -17.66 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -33.28 -8.58 -41.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072969878.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.922 kcal (2) G-P(sol) polarization free energy of solvation -33.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.865 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds