Wall clock time and date at job start Tue Mar 31 2020 11:13:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.36948 * 119.70725 * 2 1 4 4 C 1.47884 * 119.75510 * 359.97438 * 3 2 1 5 5 O 1.21542 * 120.00251 * 321.03445 * 4 3 2 6 6 N 1.34783 * 120.00029 * 141.03391 * 4 3 2 7 7 C 1.47883 * 134.34295 * 174.81144 * 6 4 3 8 8 C 1.52373 * 85.59068 * 156.51530 * 7 6 4 9 9 C 1.47889 * 134.34135 * 354.81320 * 6 4 3 10 10 C 1.53656 * 116.38803 * 141.36028 * 8 7 6 11 11 C 1.54597 * 102.73093 * 95.49205 * 10 8 7 12 12 N 1.47143 * 107.36732 * 20.75174 * 11 10 8 13 13 C 1.36936 * 125.58707 * 180.67069 * 12 11 10 14 14 H 1.08000 * 119.99902 * 180.02562 * 13 12 11 15 15 C 1.38812 * 119.99907 * 0.02562 * 13 12 11 16 16 N 1.31617 * 120.00322 * 0.02562 * 15 13 12 17 17 Si 1.86806 * 119.99922 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47027 * 89.99890 * 17 15 13 19 19 H 1.48497 * 109.47259 * 210.00322 * 17 15 13 20 20 H 1.48503 * 109.46939 * 330.00157 * 17 15 13 21 21 C 1.47723 * 108.82373 * 0.93165 * 12 11 10 22 22 C 1.36297 * 120.49152 * 180.27212 * 3 2 1 23 23 C 1.40412 * 119.90107 * 359.48525 * 22 3 2 24 24 C 1.36105 * 119.41754 * 0.49050 * 23 22 3 25 25 C 1.34671 * 119.70335 * 179.97438 * 2 1 3 26 26 O 1.21961 * 119.95828 * 359.97438 * 25 2 1 27 27 H 1.08998 * 109.47018 * 87.84950 * 1 2 3 28 28 H 1.08995 * 109.47365 * 207.85540 * 1 2 3 29 29 H 1.09007 * 109.47005 * 327.85537 * 1 2 3 30 30 H 1.09003 * 113.85138 * 42.35131 * 7 6 4 31 31 H 1.08993 * 113.97282 * 270.70002 * 7 6 4 32 32 H 1.09004 * 113.84855 * 89.31845 * 9 6 4 33 33 H 1.08998 * 113.85255 * 317.65804 * 9 6 4 34 34 H 1.08992 * 110.75822 * 337.18037 * 10 8 7 35 35 H 1.09000 * 110.75749 * 213.80137 * 10 8 7 36 36 H 1.09001 * 109.86736 * 261.30781 * 11 10 8 37 37 H 1.08998 * 109.98684 * 140.26349 * 11 10 8 38 38 H 0.96999 * 120.00524 * 179.97438 * 16 15 13 39 39 H 1.08997 * 110.39768 * 96.33618 * 21 12 11 40 40 H 1.09004 * 110.39782 * 218.74917 * 21 12 11 41 41 H 1.08000 * 120.04904 * 179.69965 * 22 3 2 42 42 H 1.08000 * 120.29098 * 180.22419 * 23 22 3 43 43 H 1.08001 * 120.24457 * 179.74063 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1436 1.1895 0.0000 4 6 1.3922 2.4632 -0.0006 5 8 0.3788 2.5707 -0.6629 6 7 1.8312 3.5050 0.7334 7 6 1.4036 4.9119 0.8903 8 6 2.0966 4.8482 2.2458 9 6 2.9321 3.6958 1.7023 10 6 2.8665 6.1054 2.6790 11 6 1.8352 6.8510 3.5568 12 7 0.8373 5.8633 3.9968 13 6 -0.2525 6.1273 4.7828 14 1 -0.9294 5.3303 5.0529 15 6 -0.4871 7.4195 5.2325 16 7 0.3375 8.3910 4.9030 17 14 -1.9734 7.7796 6.3054 18 1 -1.6039 7.6153 7.7343 19 1 -2.4287 9.1731 6.0689 20 1 -3.0691 6.8365 5.9659 21 6 1.2072 4.5389 3.4569 22 6 3.5064 1.2082 -0.0056 23 6 4.2230 0.0007 -0.0004 24 6 3.5446 -1.1793 -0.0001 25 6 2.1322 -1.1698 0.0005 26 8 1.5162 -2.2224 0.0015 27 1 -0.3633 0.0386 -1.0269 28 1 -0.3634 -0.9085 0.4801 29 1 -0.3633 0.8702 0.5468 30 1 0.3229 5.0398 0.9533 31 1 1.8738 5.5987 0.1867 32 1 3.8712 4.0090 1.2462 33 1 3.0513 2.8690 2.4025 34 1 3.1431 6.7065 1.8129 35 1 3.7477 5.8371 3.2618 36 1 1.3496 7.6337 2.9739 37 1 2.3306 7.2883 4.4236 38 1 0.1733 9.2940 5.2169 39 1 1.7627 3.9673 4.2002 40 1 0.3164 3.9936 3.1447 41 1 4.0344 2.1503 -0.0104 42 1 5.3030 0.0081 -0.0012 43 1 4.0824 -2.1159 -0.0004 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001072969878.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:29 Heat of formation + Delta-G solvation = 21.227449 kcal Electronic energy + Delta-G solvation = -26777.506301 eV Core-core repulsion = 23017.966729 eV Total energy + Delta-G solvation = -3759.539572 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.69560 -41.64429 -39.73400 -37.86902 -37.33039 -35.57874 -34.16221 -32.16672 -31.05065 -29.66192 -28.74852 -27.70581 -27.33899 -25.95117 -24.89421 -23.67225 -22.13458 -21.17019 -19.70586 -18.85261 -18.65347 -18.52654 -18.06974 -17.58157 -17.00623 -16.80871 -16.47281 -16.38960 -15.87552 -15.62491 -15.52875 -15.06106 -14.35367 -14.30757 -14.22195 -13.92062 -13.73014 -13.55304 -13.44612 -13.25272 -13.05704 -12.87370 -12.83761 -12.77656 -12.43379 -12.04420 -11.93782 -11.89574 -11.66118 -11.40641 -11.26593 -11.13985 -10.87259 -10.66722 -9.85786 -9.17888 -8.86565 -7.84924 -5.18814 -0.56088 0.62154 1.09496 1.45251 1.45723 1.54184 1.55136 1.82136 2.48483 2.54537 2.91192 3.28963 3.41467 3.53098 3.65902 3.75071 3.90867 4.03112 4.09421 4.17994 4.20324 4.23122 4.33015 4.37418 4.56187 4.59539 4.66792 4.68880 4.78812 4.84405 4.86795 4.98653 5.01524 5.09553 5.17243 5.18117 5.27248 5.41957 5.46431 5.77270 5.85268 5.88863 6.23395 6.46162 6.72922 6.83396 7.13592 7.80262 8.42086 9.24368 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.021158 B = 0.003146 C = 0.002959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.067720 B = 8897.129162 C = 9461.055895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.486 5.486 3 C 0.098 3.902 4 C 0.571 3.429 5 O -0.569 6.569 6 N -0.622 5.622 7 C 0.130 3.870 8 C -0.100 4.100 9 C 0.129 3.871 10 C -0.107 4.107 11 C 0.180 3.820 12 N -0.628 5.628 13 C -0.243 4.243 14 H 0.073 0.927 15 C -0.060 4.060 16 N -0.945 5.945 17 Si 0.970 3.030 18 H -0.285 1.285 19 H -0.293 1.293 20 H -0.275 1.275 21 C 0.156 3.844 22 C -0.153 4.153 23 C 0.002 3.998 24 C -0.232 4.232 25 C 0.496 3.504 26 O -0.601 6.601 27 H 0.077 0.923 28 H 0.088 0.912 29 H 0.079 0.921 30 H 0.052 0.948 31 H 0.120 0.880 32 H 0.147 0.853 33 H 0.103 0.897 34 H 0.097 0.903 35 H 0.093 0.907 36 H 0.009 0.991 37 H 0.007 0.993 38 H 0.247 0.753 39 H 0.035 0.965 40 H 0.021 0.979 41 H 0.187 0.813 42 H 0.196 0.804 43 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.222 -11.842 -10.749 22.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.198 5.198 3 C -0.011 4.011 4 C 0.359 3.641 5 O -0.450 6.450 6 N -0.355 5.355 7 C 0.008 3.992 8 C -0.101 4.101 9 C 0.008 3.992 10 C -0.146 4.146 11 C 0.055 3.945 12 N -0.354 5.354 13 C -0.372 4.372 14 H 0.091 0.909 15 C -0.253 4.253 16 N -0.594 5.594 17 Si 0.799 3.201 18 H -0.212 1.212 19 H -0.220 1.220 20 H -0.201 1.201 21 C 0.031 3.969 22 C -0.177 4.177 23 C -0.019 4.019 24 C -0.254 4.254 25 C 0.300 3.700 26 O -0.487 6.487 27 H 0.096 0.904 28 H 0.107 0.893 29 H 0.098 0.902 30 H 0.071 0.929 31 H 0.138 0.862 32 H 0.165 0.835 33 H 0.122 0.878 34 H 0.115 0.885 35 H 0.112 0.888 36 H 0.027 0.973 37 H 0.026 0.974 38 H 0.056 0.944 39 H 0.053 0.947 40 H 0.039 0.961 41 H 0.204 0.796 42 H 0.213 0.787 43 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 14.056 -12.422 -11.101 21.797 hybrid contribution -1.840 0.556 0.777 2.074 sum 12.216 -11.867 -10.324 19.915 Atomic orbital electron populations 1.22093 0.77174 1.04042 1.04137 1.45452 1.09567 1.05896 1.58856 1.20228 0.93804 0.84889 1.02197 1.17776 0.83998 0.83184 0.79118 1.90836 1.26082 1.83719 1.44317 1.50137 1.33630 1.10065 1.41624 1.23128 1.00441 0.80320 0.95278 1.22289 0.96962 0.97385 0.93508 1.23546 0.91393 0.96252 0.87988 1.22511 0.97396 0.94517 1.00137 1.21052 0.88329 0.90467 0.94667 1.44847 1.27184 1.04577 1.58795 1.19347 1.01251 0.93802 1.22806 0.90927 1.25509 1.01563 0.95798 1.02461 1.70150 1.38831 1.00187 1.50212 0.85206 0.79397 0.76815 0.78683 1.21205 1.21962 1.20061 1.21201 0.95442 0.87520 0.92706 1.21502 0.89390 1.02430 1.04413 1.21914 1.03242 0.89373 0.87401 1.22545 0.90485 1.02519 1.09855 1.18021 0.90853 0.81770 0.79316 1.90906 1.71131 1.30611 1.56082 0.90436 0.89339 0.90221 0.92914 0.86205 0.83500 0.87838 0.88497 0.88843 0.97312 0.97449 0.94398 0.94696 0.96099 0.79620 0.78709 0.81334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.79 9.14 127.77 1.17 2.96 16 2 N -0.49 -12.32 3.02 -660.62 -1.99 -14.32 16 3 C 0.10 2.03 6.44 40.45 0.26 2.29 16 4 C 0.57 14.56 6.89 86.80 0.60 15.16 16 5 O -0.57 -19.23 15.59 -3.85 -0.06 -19.29 16 6 N -0.62 -13.43 3.57 -867.10 -3.09 -16.52 16 7 C 0.13 3.28 8.15 85.91 0.70 3.98 16 8 C -0.10 -2.49 0.99 -52.16 -0.05 -2.54 16 9 C 0.13 1.82 6.32 85.90 0.54 2.36 16 10 C -0.11 -2.82 6.36 31.36 0.20 -2.62 16 11 C 0.18 7.89 5.40 86.80 0.47 8.36 16 12 N -0.63 -30.22 3.41 -693.33 -2.36 -32.59 16 13 C -0.24 -13.38 10.28 84.03 0.86 -12.51 16 14 H 0.07 3.93 7.83 -2.91 -0.02 3.90 16 15 C -0.06 -3.34 5.49 84.86 0.47 -2.88 16 16 N -0.94 -55.02 10.30 21.65 0.22 -54.80 16 17 Si 0.97 45.47 29.55 68.60 2.03 47.50 16 18 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 19 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 20 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 21 C 0.16 5.68 6.63 86.28 0.57 6.26 16 22 C -0.15 -1.72 8.84 22.35 0.20 -1.52 16 23 C 0.00 0.01 10.08 22.30 0.22 0.24 16 24 C -0.23 -3.75 10.00 22.51 0.23 -3.52 16 25 C 0.50 13.02 7.43 85.00 0.63 13.65 16 26 O -0.60 -20.62 16.61 -5.19 -0.09 -20.70 16 27 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 28 H 0.09 2.35 7.33 -2.39 -0.02 2.33 16 29 H 0.08 2.23 6.38 -2.38 -0.02 2.21 16 30 H 0.05 1.75 8.12 -2.39 -0.02 1.73 16 31 H 0.12 2.37 8.04 -2.39 -0.02 2.35 16 32 H 0.15 0.72 7.90 -2.39 -0.02 0.70 16 33 H 0.10 1.26 8.12 -2.39 -0.02 1.24 16 34 H 0.10 2.03 7.99 -2.39 -0.02 2.01 16 35 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 36 H 0.01 0.44 7.40 -2.39 -0.02 0.42 16 37 H 0.01 0.37 7.47 -2.39 -0.02 0.35 16 38 H 0.25 14.03 8.31 -92.71 -0.77 13.26 16 39 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.02 0.82 8.07 -2.39 -0.02 0.80 16 41 H 0.19 0.77 6.78 -2.91 -0.02 0.75 16 42 H 0.20 -0.24 8.06 -2.91 -0.02 -0.26 16 43 H 0.17 2.12 8.06 -2.91 -0.02 2.10 16 Total: -1.00 -81.92 352.06 2.74 -79.17 By element: Atomic # 1 Polarization: 0.88 SS G_CDS: 1.02 Total: 1.89 kcal Atomic # 6 Polarization: 22.59 SS G_CDS: 7.07 Total: 29.65 kcal Atomic # 7 Polarization: -111.00 SS G_CDS: -7.22 Total: -118.22 kcal Atomic # 8 Polarization: -39.85 SS G_CDS: -0.15 Total: -40.00 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.50 kcal Total: -81.92 2.74 -79.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072969878.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.401 kcal (2) G-P(sol) polarization free energy of solvation -81.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.173 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds