Wall clock time and date at job start Tue Mar 31 2020 11:39:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35660 * 117.00478 * 2 1 4 4 C 1.39283 * 119.61823 * 180.02562 * 3 2 1 5 5 C 1.38335 * 119.30204 * 179.97438 * 4 3 2 6 6 C 1.38773 * 118.56267 * 359.97438 * 5 4 3 7 7 C 1.39129 * 119.18961 * 0.02562 * 6 5 4 8 8 C 1.48152 * 119.69251 * 179.97438 * 7 6 5 9 9 O 1.21524 * 119.99763 * 0.02562 * 8 7 6 10 10 N 1.34773 * 119.99928 * 180.02562 * 8 7 6 11 11 C 1.47286 * 136.54294 * 0.02562 * 10 8 7 12 12 C 1.54090 * 87.60703 * 151.38668 * 11 10 8 13 13 H 1.09000 * 115.03966 * 141.62664 * 12 11 10 14 14 C 1.53057 * 111.39527 * 273.97058 * 12 11 10 15 15 C 1.53147 * 109.21084 * 142.40565 * 14 12 11 16 16 N 1.46541 * 108.24983 * 301.58131 * 15 14 12 17 17 C 1.36935 * 119.74260 * 236.39789 * 16 15 14 18 18 H 1.07998 * 119.99986 * 150.86560 * 17 16 15 19 19 C 1.38814 * 119.99607 * 330.87245 * 17 16 15 20 20 N 1.31620 * 119.99854 * 158.23363 * 19 17 16 21 21 Si 1.86797 * 120.00156 * 338.22860 * 19 17 16 22 22 H 1.48500 * 109.46960 * 94.79545 * 21 19 17 23 23 H 1.48497 * 109.47131 * 214.79157 * 21 19 17 24 24 H 1.48496 * 109.47215 * 334.79620 * 21 19 17 25 25 C 1.45702 * 120.52129 * 56.42189 * 16 15 14 26 26 C 1.46468 * 136.54343 * 179.97438 * 10 8 7 27 27 H 1.09000 * 111.43706 * 96.35934 * 26 10 8 28 28 N 1.31909 * 119.61292 * 0.24375 * 3 2 1 29 29 H 1.08997 * 109.47321 * 300.00859 * 1 2 3 30 30 H 1.09003 * 109.46793 * 60.00169 * 1 2 3 31 31 H 1.08996 * 109.47510 * 180.02562 * 1 2 3 32 32 H 1.07997 * 120.34916 * 0.02562 * 4 3 2 33 33 H 1.08002 * 120.71611 * 179.97438 * 5 4 3 34 34 H 1.08004 * 120.40909 * 179.97438 * 6 5 4 35 35 H 1.09002 * 113.53082 * 266.06880 * 11 10 8 36 36 H 1.09000 * 113.53217 * 36.71071 * 11 10 8 37 37 H 1.08996 * 109.51565 * 262.32524 * 14 12 11 38 38 H 1.09000 * 109.51482 * 22.48473 * 14 12 11 39 39 H 1.08994 * 109.70819 * 61.27509 * 15 14 12 40 40 H 1.08998 * 109.71126 * 181.85613 * 15 14 12 41 41 H 0.96998 * 120.00186 * 180.02562 * 20 19 17 42 42 H 1.09001 * 108.78877 * 199.11623 * 25 16 15 43 43 H 1.08999 * 108.78747 * 80.90377 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2087 0.0000 4 6 3.4363 1.2722 -0.0005 5 6 4.0577 2.5082 -0.0011 6 6 3.2667 3.6484 -0.0016 7 6 1.8819 3.5136 -0.0010 8 6 1.0268 4.7235 -0.0010 9 8 1.5356 5.8271 -0.0020 10 7 -0.3152 4.6001 0.0001 11 6 -1.2871 3.4934 0.0018 12 6 -2.2597 4.4343 0.7389 13 1 -3.3036 4.3468 0.4378 14 6 -2.0318 4.3989 2.2520 15 6 -2.2179 5.8078 2.8228 16 7 -1.2667 6.7019 2.1570 17 6 -0.3779 7.4268 2.9052 18 1 0.5813 7.6990 2.4902 19 6 -0.7097 7.8115 4.1970 20 7 0.2390 8.1129 5.0581 21 14 -2.5027 7.9015 4.7133 22 1 -2.8940 6.6269 5.3672 23 1 -2.6873 9.0243 5.6674 24 1 -3.3520 8.1246 3.5158 25 6 -1.2596 6.8262 0.7054 26 6 -1.4662 5.5060 0.0009 27 1 -1.8495 5.6640 -1.0071 28 7 1.3192 2.3101 0.0049 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 4.0239 0.3661 -0.0014 33 1 5.1350 2.5840 -0.0011 34 1 3.7204 4.6285 -0.0016 35 1 -1.6265 3.2107 -0.9947 36 1 -0.9719 2.6384 0.5998 37 1 -2.7508 3.7215 2.7127 38 1 -1.0194 4.0526 2.4598 39 1 -3.2360 6.1488 2.6353 40 1 -2.0252 5.7983 3.8955 41 1 0.0072 8.3814 5.9609 42 1 -0.3027 7.2449 0.3935 43 1 -2.0536 7.5112 0.4078 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084751734.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:52 Heat of formation + Delta-G solvation = 50.951253 kcal Electronic energy + Delta-G solvation = -27700.449859 eV Core-core repulsion = 23942.199207 eV Total energy + Delta-G solvation = -3758.250651 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.08244 -40.37048 -38.41637 -37.27994 -35.53892 -32.87571 -31.83245 -31.10320 -30.93056 -29.19549 -27.59982 -27.08104 -24.70129 -23.55905 -23.25247 -22.88943 -21.17763 -20.60824 -18.61388 -17.98762 -17.33094 -16.58119 -16.23426 -16.12596 -15.86942 -15.73846 -15.36293 -15.10841 -14.31588 -14.10904 -13.86666 -13.67659 -13.49993 -13.31281 -13.06741 -12.71084 -12.46143 -12.37380 -12.19576 -11.91354 -11.83242 -11.38459 -11.29683 -11.03257 -10.86508 -10.66384 -10.43765 -10.10720 -10.08416 -9.84379 -9.55745 -9.39803 -9.25028 -8.70404 -8.57195 -8.25361 -6.84962 -5.84853 -3.20125 0.63104 1.14961 2.87611 2.95547 3.02211 3.36662 3.53209 3.56894 3.87216 3.97756 4.51688 4.61059 4.63389 4.83383 4.87459 5.00931 5.05391 5.08693 5.12834 5.15287 5.28476 5.30894 5.43040 5.48827 5.57889 5.64861 5.66455 5.82087 5.88245 5.99088 6.01592 6.07488 6.19900 6.23976 6.33842 6.40944 6.63514 6.70479 6.83403 6.97765 7.02541 7.55445 8.05435 8.12915 8.46599 8.49606 9.09464 9.83961 10.17577 11.31337 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.016609 B = 0.004502 C = 0.004148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.475771 B = 6218.194085 C = 6748.933991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.309 6.309 3 C 0.314 3.686 4 C -0.173 4.173 5 C -0.047 4.047 6 C -0.148 4.148 7 C 0.135 3.865 8 C 0.598 3.402 9 O -0.514 6.514 10 N -0.612 5.612 11 C 0.109 3.891 12 C -0.117 4.117 13 H 0.096 0.904 14 C -0.115 4.115 15 C 0.129 3.871 16 N -0.596 5.596 17 C -0.252 4.252 18 H 0.085 0.915 19 C 0.023 3.977 20 N -0.908 5.908 21 Si 0.879 3.121 22 H -0.290 1.290 23 H -0.304 1.304 24 H -0.270 1.270 25 C 0.143 3.857 26 C 0.127 3.873 27 H 0.082 0.918 28 N -0.511 5.511 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.095 0.905 32 H 0.144 0.856 33 H 0.149 0.851 34 H 0.152 0.848 35 H 0.075 0.925 36 H 0.085 0.915 37 H 0.058 0.942 38 H 0.067 0.933 39 H 0.026 0.974 40 H 0.074 0.926 41 H 0.261 0.739 42 H 0.079 0.921 43 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.385 -17.468 -13.002 21.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.216 6.216 3 C 0.133 3.867 4 C -0.194 4.194 5 C -0.073 4.073 6 C -0.169 4.169 7 C -0.002 4.002 8 C 0.385 3.615 9 O -0.389 6.389 10 N -0.346 5.346 11 C -0.014 4.014 12 C -0.136 4.136 13 H 0.114 0.886 14 C -0.154 4.154 15 C 0.004 3.996 16 N -0.319 5.319 17 C -0.381 4.381 18 H 0.102 0.898 19 C -0.176 4.176 20 N -0.551 5.551 21 Si 0.710 3.290 22 H -0.218 1.218 23 H -0.232 1.232 24 H -0.195 1.195 25 C 0.016 3.984 26 C 0.023 3.977 27 H 0.099 0.901 28 N -0.238 5.238 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.114 0.886 32 H 0.162 0.838 33 H 0.166 0.834 34 H 0.170 0.830 35 H 0.093 0.907 36 H 0.103 0.897 37 H 0.077 0.923 38 H 0.085 0.915 39 H 0.044 0.956 40 H 0.092 0.908 41 H 0.070 0.930 42 H 0.097 0.903 43 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -0.624 -17.061 -12.858 21.373 hybrid contribution -0.343 0.071 0.384 0.520 sum -0.967 -16.990 -12.474 21.100 Atomic orbital electron populations 1.22923 0.77176 1.02967 1.02625 1.86229 1.22984 1.24270 1.88074 1.19797 0.89401 0.84547 0.92992 1.21241 0.91979 0.99758 1.06390 1.21434 1.00873 0.90785 0.94188 1.22039 0.93069 1.01033 1.00755 1.20893 0.92110 0.90100 0.97088 1.17151 0.79840 0.87152 0.77363 1.90833 1.72449 1.25747 1.49860 1.49089 1.02732 1.11574 1.71178 1.23308 0.86089 0.92298 0.99681 1.22820 0.97978 0.96014 0.96762 0.88639 1.21820 1.01716 0.99545 0.92304 1.21191 0.92591 0.88519 0.97344 1.43781 1.40326 1.47312 1.00463 1.18970 0.95467 1.27840 0.95797 0.89751 1.25285 0.96904 0.99056 0.96326 1.69871 1.31519 1.49330 1.04423 0.86963 0.88008 0.76240 0.77819 1.21839 1.23236 1.19534 1.20314 1.01312 0.92114 0.84661 1.22397 0.82657 0.93978 0.98701 0.90066 1.67300 1.40625 0.98158 1.17677 0.92029 0.92243 0.88642 0.83839 0.83356 0.83001 0.90653 0.89679 0.92324 0.91475 0.95620 0.90838 0.92964 0.90300 0.95712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.33 10.33 101.05 1.04 1.38 16 2 O -0.31 -3.51 10.47 -18.68 -0.20 -3.70 16 3 C 0.31 3.98 7.49 -17.13 -0.13 3.85 16 4 C -0.17 -1.84 10.05 -39.16 -0.39 -2.23 16 5 C -0.05 -0.50 10.16 -39.35 -0.40 -0.90 16 6 C -0.15 -2.05 9.63 -39.05 -0.38 -2.43 16 7 C 0.14 2.18 6.75 -83.02 -0.56 1.62 16 8 C 0.60 11.44 8.00 -12.19 -0.10 11.34 16 9 O -0.51 -11.61 15.56 5.35 0.08 -11.53 16 10 N -0.61 -10.49 3.33 -188.74 -0.63 -11.12 16 11 C 0.11 1.43 6.87 -11.53 -0.08 1.35 16 12 C -0.12 -1.67 4.57 -90.33 -0.41 -2.09 16 13 H 0.10 1.10 8.14 -51.93 -0.42 0.67 16 14 C -0.11 -2.00 5.69 -26.63 -0.15 -2.15 16 15 C 0.13 2.84 4.17 -3.94 -0.02 2.82 16 16 N -0.60 -14.71 2.76 -174.92 -0.48 -15.19 16 17 C -0.25 -7.44 9.93 -15.06 -0.15 -7.59 16 18 H 0.08 2.77 8.01 -52.49 -0.42 2.35 16 19 C 0.02 0.67 5.17 -17.43 -0.09 0.58 16 20 N -0.91 -28.87 13.97 55.49 0.78 -28.09 16 21 Si 0.88 22.78 24.42 -169.99 -4.15 18.63 16 22 H -0.29 -7.23 6.70 56.52 0.38 -6.85 16 23 H -0.30 -8.03 7.11 56.52 0.40 -7.63 16 24 H -0.27 -6.83 6.74 56.52 0.38 -6.45 16 25 C 0.14 3.02 6.15 -5.45 -0.03 2.99 16 26 C 0.13 2.11 4.03 -77.72 -0.31 1.80 16 27 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 28 N -0.51 -7.34 6.90 -9.87 -0.07 -7.40 16 29 H 0.06 0.58 7.46 -51.93 -0.39 0.19 16 30 H 0.06 0.51 8.11 -51.93 -0.42 0.08 16 31 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.14 1.14 8.06 -52.49 -0.42 0.71 16 33 H 0.15 1.03 8.06 -52.49 -0.42 0.61 16 34 H 0.15 2.12 7.63 -52.48 -0.40 1.72 16 35 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.08 1.11 6.34 -51.93 -0.33 0.78 16 37 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.07 1.33 7.68 -51.93 -0.40 0.94 16 39 H 0.03 0.54 7.25 -51.93 -0.38 0.17 16 40 H 0.07 1.80 4.53 -51.93 -0.24 1.56 16 41 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 42 H 0.08 1.87 6.46 -51.93 -0.34 1.54 16 43 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 LS Contribution 343.68 15.07 5.18 5.18 Total: -1.00 -35.71 343.68 -7.51 -43.22 By element: Atomic # 1 Polarization: 5.52 SS G_CDS: -5.87 Total: -0.35 kcal Atomic # 6 Polarization: 12.51 SS G_CDS: -2.16 Total: 10.35 kcal Atomic # 7 Polarization: -61.40 SS G_CDS: -0.40 Total: -61.80 kcal Atomic # 8 Polarization: -15.12 SS G_CDS: -0.11 Total: -15.23 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -4.15 Total: 18.63 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -35.71 -7.51 -43.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084751734.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.175 kcal (2) G-P(sol) polarization free energy of solvation -35.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.224 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds