Wall clock time and date at job start Tue Mar 31 2020 11:39:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35660 * 117.00478 * 2 1 4 4 C 1.39283 * 119.61823 * 180.02562 * 3 2 1 5 5 C 1.38335 * 119.30204 * 179.97438 * 4 3 2 6 6 C 1.38773 * 118.56267 * 359.97438 * 5 4 3 7 7 C 1.39129 * 119.18961 * 0.02562 * 6 5 4 8 8 C 1.48152 * 119.69251 * 179.97438 * 7 6 5 9 9 O 1.21524 * 119.99763 * 0.02562 * 8 7 6 10 10 N 1.34773 * 119.99928 * 180.02562 * 8 7 6 11 11 C 1.47286 * 136.54294 * 0.02562 * 10 8 7 12 12 C 1.54090 * 87.60703 * 151.38668 * 11 10 8 13 13 H 1.09000 * 115.03966 * 141.62664 * 12 11 10 14 14 C 1.53057 * 111.39527 * 273.97058 * 12 11 10 15 15 C 1.53147 * 109.21084 * 142.40565 * 14 12 11 16 16 N 1.46541 * 108.24983 * 301.58131 * 15 14 12 17 17 C 1.36935 * 119.74260 * 236.39789 * 16 15 14 18 18 H 1.07998 * 119.99986 * 150.86560 * 17 16 15 19 19 C 1.38814 * 119.99607 * 330.87245 * 17 16 15 20 20 N 1.31620 * 119.99854 * 158.23363 * 19 17 16 21 21 Si 1.86797 * 120.00156 * 338.22860 * 19 17 16 22 22 H 1.48500 * 109.46960 * 94.79545 * 21 19 17 23 23 H 1.48497 * 109.47131 * 214.79157 * 21 19 17 24 24 H 1.48496 * 109.47215 * 334.79620 * 21 19 17 25 25 C 1.45702 * 120.52129 * 56.42189 * 16 15 14 26 26 C 1.46468 * 136.54343 * 179.97438 * 10 8 7 27 27 H 1.09000 * 111.43706 * 96.35934 * 26 10 8 28 28 N 1.31909 * 119.61292 * 0.24375 * 3 2 1 29 29 H 1.08997 * 109.47321 * 300.00859 * 1 2 3 30 30 H 1.09003 * 109.46793 * 60.00169 * 1 2 3 31 31 H 1.08996 * 109.47510 * 180.02562 * 1 2 3 32 32 H 1.07997 * 120.34916 * 0.02562 * 4 3 2 33 33 H 1.08002 * 120.71611 * 179.97438 * 5 4 3 34 34 H 1.08004 * 120.40909 * 179.97438 * 6 5 4 35 35 H 1.09002 * 113.53082 * 266.06880 * 11 10 8 36 36 H 1.09000 * 113.53217 * 36.71071 * 11 10 8 37 37 H 1.08996 * 109.51565 * 262.32524 * 14 12 11 38 38 H 1.09000 * 109.51482 * 22.48473 * 14 12 11 39 39 H 1.08994 * 109.70819 * 61.27509 * 15 14 12 40 40 H 1.08998 * 109.71126 * 181.85613 * 15 14 12 41 41 H 0.96998 * 120.00186 * 180.02562 * 20 19 17 42 42 H 1.09001 * 108.78877 * 199.11623 * 25 16 15 43 43 H 1.08999 * 108.78747 * 80.90377 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2087 0.0000 4 6 3.4363 1.2722 -0.0005 5 6 4.0577 2.5082 -0.0011 6 6 3.2667 3.6484 -0.0016 7 6 1.8819 3.5136 -0.0010 8 6 1.0268 4.7235 -0.0010 9 8 1.5356 5.8271 -0.0020 10 7 -0.3152 4.6001 0.0001 11 6 -1.2871 3.4934 0.0018 12 6 -2.2597 4.4343 0.7389 13 1 -3.3036 4.3468 0.4378 14 6 -2.0318 4.3989 2.2520 15 6 -2.2179 5.8078 2.8228 16 7 -1.2667 6.7019 2.1570 17 6 -0.3779 7.4268 2.9052 18 1 0.5813 7.6990 2.4902 19 6 -0.7097 7.8115 4.1970 20 7 0.2390 8.1129 5.0581 21 14 -2.5027 7.9015 4.7133 22 1 -2.8940 6.6269 5.3672 23 1 -2.6873 9.0243 5.6674 24 1 -3.3520 8.1246 3.5158 25 6 -1.2596 6.8262 0.7054 26 6 -1.4662 5.5060 0.0009 27 1 -1.8495 5.6640 -1.0071 28 7 1.3192 2.3101 0.0049 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 4.0239 0.3661 -0.0014 33 1 5.1350 2.5840 -0.0011 34 1 3.7204 4.6285 -0.0016 35 1 -1.6265 3.2107 -0.9947 36 1 -0.9719 2.6384 0.5998 37 1 -2.7508 3.7215 2.7127 38 1 -1.0194 4.0526 2.4598 39 1 -3.2360 6.1488 2.6353 40 1 -2.0252 5.7983 3.8955 41 1 0.0072 8.3814 5.9609 42 1 -0.3027 7.2449 0.3935 43 1 -2.0536 7.5112 0.4078 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084751734.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:51 Heat of formation + Delta-G solvation = 23.143860 kcal Electronic energy + Delta-G solvation = -27701.655678 eV Core-core repulsion = 23942.199207 eV Total energy + Delta-G solvation = -3759.456470 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.27161 -41.46809 -39.58768 -38.45686 -37.33856 -34.09757 -33.68222 -32.72686 -31.98706 -30.62346 -28.91394 -28.18381 -25.91440 -25.40672 -24.55514 -23.87584 -22.74301 -21.91721 -19.84783 -19.13547 -18.90105 -18.15581 -17.32426 -17.22725 -17.09996 -16.97306 -16.83502 -16.69693 -15.58280 -15.39210 -15.36364 -15.14273 -14.86180 -14.45654 -14.39717 -14.22893 -13.99888 -13.90417 -13.49487 -13.26415 -12.88771 -12.69682 -12.62357 -12.60467 -12.26085 -12.18062 -12.11719 -11.59202 -11.57500 -11.42628 -11.03442 -11.01752 -10.72267 -10.52429 -9.79180 -9.51291 -8.88333 -8.17635 -5.50233 -0.42508 0.20391 1.28655 1.40895 1.52261 1.71937 1.78441 2.06324 2.41269 2.76106 2.90738 3.02312 3.29214 3.38887 3.62083 3.84350 3.90555 3.98430 4.06245 4.20879 4.27455 4.32501 4.41651 4.45879 4.48737 4.49791 4.54380 4.60269 4.75118 4.77711 4.85363 4.87646 4.92682 4.99758 5.04021 5.08168 5.20626 5.21443 5.30317 5.52694 5.89541 6.11553 6.12265 6.53285 6.75914 6.96142 7.11380 7.65769 7.98297 9.03494 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.016609 B = 0.004502 C = 0.004148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.475771 B = 6218.194085 C = 6748.933991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.311 6.311 3 C 0.302 3.698 4 C -0.159 4.159 5 C -0.035 4.035 6 C -0.163 4.163 7 C 0.105 3.895 8 C 0.582 3.418 9 O -0.575 6.575 10 N -0.621 5.621 11 C 0.121 3.879 12 C -0.102 4.102 13 H 0.148 0.852 14 C -0.108 4.108 15 C 0.121 3.879 16 N -0.609 5.609 17 C -0.249 4.249 18 H 0.022 0.978 19 C -0.040 4.040 20 N -0.963 5.963 21 Si 0.962 3.038 22 H -0.269 1.269 23 H -0.311 1.311 24 H -0.253 1.253 25 C 0.140 3.860 26 C 0.116 3.884 27 H 0.121 0.879 28 N -0.515 5.515 29 H 0.052 0.948 30 H 0.062 0.938 31 H 0.125 0.875 32 H 0.180 0.820 33 H 0.188 0.812 34 H 0.137 0.863 35 H 0.115 0.885 36 H 0.086 0.914 37 H 0.099 0.901 38 H 0.031 0.969 39 H 0.051 0.949 40 H 0.044 0.956 41 H 0.262 0.738 42 H 0.035 0.965 43 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.354 -21.324 -14.330 25.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.217 6.217 3 C 0.120 3.880 4 C -0.179 4.179 5 C -0.060 4.060 6 C -0.185 4.185 7 C -0.031 4.031 8 C 0.371 3.629 9 O -0.454 6.454 10 N -0.354 5.354 11 C -0.001 4.001 12 C -0.121 4.121 13 H 0.166 0.834 14 C -0.147 4.147 15 C -0.003 4.003 16 N -0.333 5.333 17 C -0.379 4.379 18 H 0.040 0.960 19 C -0.234 4.234 20 N -0.609 5.609 21 Si 0.789 3.211 22 H -0.195 1.195 23 H -0.240 1.240 24 H -0.177 1.177 25 C 0.015 3.985 26 C 0.012 3.988 27 H 0.139 0.861 28 N -0.242 5.242 29 H 0.071 0.929 30 H 0.081 0.919 31 H 0.143 0.857 32 H 0.197 0.803 33 H 0.206 0.794 34 H 0.155 0.845 35 H 0.133 0.867 36 H 0.104 0.896 37 H 0.117 0.883 38 H 0.050 0.950 39 H 0.069 0.931 40 H 0.063 0.937 41 H 0.070 0.930 42 H 0.053 0.947 43 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -3.661 -20.986 -14.228 25.617 hybrid contribution 0.697 1.192 0.759 1.576 sum -2.965 -19.793 -13.469 24.124 Atomic orbital electron populations 1.23154 0.75812 1.04905 1.02334 1.86248 1.24418 1.23221 1.87860 1.20195 0.90434 0.84506 0.92880 1.21709 0.91516 1.00939 1.03739 1.21834 1.02457 0.89406 0.92322 1.22140 0.92921 1.01914 1.01506 1.20571 0.92391 0.89860 1.00260 1.17778 0.80906 0.87528 0.76681 1.90786 1.73747 1.28072 1.52836 1.49370 1.02608 1.13563 1.69869 1.23497 0.83889 0.91030 1.01638 1.22851 1.00638 0.94466 0.94096 0.83439 1.21707 1.00898 0.97008 0.95044 1.21324 0.92567 0.90654 0.95790 1.43833 1.40103 1.47714 1.01647 1.18693 0.94304 1.28437 0.96417 0.96014 1.26043 1.02092 0.99104 0.96112 1.70040 1.34289 1.51537 1.04995 0.85654 0.81153 0.76615 0.77692 1.19509 1.23966 1.17688 1.20372 0.99536 0.95504 0.83117 1.22659 0.83513 0.92067 1.00520 0.86133 1.67142 1.41031 0.97835 1.18168 0.92885 0.91897 0.85657 0.80300 0.79447 0.84537 0.86710 0.89556 0.88267 0.95013 0.93146 0.93740 0.92971 0.94662 0.94229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 10.33 113.37 1.17 1.64 16 2 O -0.31 -6.18 10.47 -89.76 -0.94 -7.12 16 3 C 0.30 7.07 7.49 84.93 0.64 7.70 16 4 C -0.16 -2.93 10.05 22.54 0.23 -2.71 16 5 C -0.04 -0.69 10.16 22.42 0.23 -0.46 16 6 C -0.16 -4.75 9.63 22.61 0.22 -4.53 16 7 C 0.10 3.52 6.75 41.84 0.28 3.80 16 8 C 0.58 23.74 8.00 86.88 0.69 24.43 16 9 O -0.57 -28.84 15.56 -3.79 -0.06 -28.90 16 10 N -0.62 -21.22 3.33 -869.34 -2.90 -24.12 16 11 C 0.12 2.75 6.87 81.10 0.56 3.31 16 12 C -0.10 -2.48 4.57 -10.60 -0.05 -2.53 16 13 H 0.15 2.25 8.14 -2.39 -0.02 2.23 16 14 C -0.11 -3.46 5.69 30.66 0.17 -3.29 16 15 C 0.12 5.11 4.17 86.42 0.36 5.47 16 16 N -0.61 -30.82 2.76 -707.32 -1.95 -32.77 16 17 C -0.25 -15.68 9.93 84.03 0.83 -14.84 16 18 H 0.02 1.61 8.01 -2.91 -0.02 1.59 16 19 C -0.04 -2.47 5.17 84.86 0.44 -2.03 16 20 N -0.96 -64.72 13.97 21.65 0.30 -64.42 16 21 Si 0.96 48.15 24.42 68.60 1.67 49.83 16 22 H -0.27 -12.43 6.70 99.48 0.67 -11.77 16 23 H -0.31 -15.79 7.11 99.48 0.71 -15.09 16 24 H -0.25 -11.82 6.74 99.48 0.67 -11.15 16 25 C 0.14 6.10 6.15 85.90 0.53 6.63 16 26 C 0.12 3.66 4.03 38.67 0.16 3.82 16 27 H 0.12 2.91 8.14 -2.39 -0.02 2.89 16 28 N -0.51 -14.40 6.90 -298.20 -2.06 -16.45 16 29 H 0.05 0.86 7.46 -2.39 -0.02 0.84 16 30 H 0.06 0.87 8.11 -2.39 -0.02 0.85 16 31 H 0.13 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.18 2.03 8.06 -2.91 -0.02 2.01 16 33 H 0.19 2.07 8.06 -2.91 -0.02 2.04 16 34 H 0.14 4.28 7.63 -2.91 -0.02 4.26 16 35 H 0.12 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.09 2.00 6.34 -2.39 -0.02 1.99 16 37 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 38 H 0.03 1.24 7.68 -2.39 -0.02 1.22 16 39 H 0.05 1.91 7.25 -2.39 -0.02 1.89 16 40 H 0.04 2.13 4.53 -2.39 -0.01 2.12 16 41 H 0.26 16.49 8.31 -92.71 -0.77 15.72 16 42 H 0.03 1.82 6.46 -2.39 -0.02 1.80 16 43 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 Total: -1.00 -88.82 343.68 1.48 -87.34 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: 0.95 Total: 10.22 kcal Atomic # 6 Polarization: 19.95 SS G_CDS: 6.46 Total: 26.40 kcal Atomic # 7 Polarization: -131.16 SS G_CDS: -6.60 Total: -137.77 kcal Atomic # 8 Polarization: -35.02 SS G_CDS: -1.00 Total: -36.02 kcal Atomic # 14 Polarization: 48.15 SS G_CDS: 1.67 Total: 49.83 kcal Total: -88.82 1.48 -87.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084751734.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.484 kcal (2) G-P(sol) polarization free energy of solvation -88.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.341 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds