Wall clock time and date at job start Tue Mar 31 2020 11:14:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34601 * 119.47630 * 2 1 4 4 C 1.38002 * 120.46040 * 180.30233 * 3 2 1 5 5 C 1.47446 * 120.26244 * 179.68905 * 4 3 2 6 6 O 1.21614 * 119.99717 * 359.72868 * 5 4 3 7 7 N 1.34778 * 120.00371 * 179.72485 * 5 4 3 8 8 C 1.46504 * 120.00279 * 180.02562 * 7 5 4 9 9 H 1.09000 * 110.68136 * 37.01252 * 8 7 5 10 10 C 1.55475 * 110.60770 * 160.15293 * 8 7 5 11 11 C 1.55848 * 103.32492 * 118.41867 * 10 8 7 12 12 H 1.08998 * 116.12899 * 159.23369 * 11 10 8 13 13 C 1.56854 * 105.77510 * 288.56084 * 11 10 8 14 14 C 1.54858 * 103.35524 * 71.45566 * 13 11 10 15 15 C 1.55837 * 110.62408 * 274.02727 * 8 7 5 16 16 H 1.09003 * 115.56577 * 82.69509 * 15 8 7 17 17 N 1.50229 * 101.05130 * 33.01999 * 11 10 8 18 18 C 1.36946 * 130.83735 * 126.07020 * 17 11 10 19 19 H 1.08001 * 119.99777 * 179.66189 * 18 17 11 20 20 C 1.38805 * 119.99877 * 359.66218 * 18 17 11 21 21 N 1.31618 * 120.00131 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 120.00109 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47067 * 59.99638 * 22 20 18 24 24 H 1.48494 * 109.47391 * 180.02562 * 22 20 18 25 25 H 1.48507 * 109.46883 * 300.00188 * 22 20 18 26 26 C 1.41597 * 119.48089 * 359.41629 * 4 3 2 27 27 C 1.35977 * 119.01256 * 0.27236 * 26 4 3 28 28 C 1.34537 * 119.48165 * 179.69020 * 2 1 3 29 29 O 1.21959 * 119.74741 * 0.02562 * 28 2 1 30 30 H 1.08999 * 109.46928 * 180.30128 * 1 2 3 31 31 H 1.08995 * 109.47667 * 300.30867 * 1 2 3 32 32 H 1.09008 * 109.46766 * 60.31034 * 1 2 3 33 33 H 1.08004 * 119.77473 * 0.02562 * 3 2 1 34 34 H 0.96991 * 119.99736 * 359.97438 * 7 5 4 35 35 H 1.09001 * 110.61424 * 0.02562 * 10 8 7 36 36 H 1.09004 * 110.75532 * 236.89958 * 10 8 7 37 37 H 1.09000 * 110.43789 * 313.10823 * 13 11 10 38 38 H 1.08996 * 111.04377 * 190.09588 * 13 11 10 39 39 H 1.08999 * 110.63002 * 241.78564 * 14 13 11 40 40 H 1.08996 * 110.76143 * 118.83089 * 14 13 11 41 41 H 0.97006 * 120.00033 * 179.97438 * 21 20 18 42 42 H 1.07998 * 120.49710 * 180.30043 * 26 4 3 43 43 H 1.07999 * 120.24822 * 179.97438 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1273 1.1718 0.0000 4 6 3.5071 1.1955 -0.0063 5 6 4.2282 2.4816 -0.0132 6 8 3.6068 3.5270 -0.0183 7 7 5.5758 2.4987 -0.0137 8 6 6.2922 3.7766 -0.0199 9 1 5.7704 4.5135 0.5906 10 6 7.7540 3.5869 0.4746 11 6 8.6082 4.0214 -0.7544 12 1 9.6393 4.3065 -0.5457 13 6 8.4290 2.8856 -1.8213 14 6 6.9706 3.0769 -2.3058 15 6 6.4709 4.2986 -1.4774 16 1 5.6162 4.8315 -1.8942 17 7 7.7383 5.0944 -1.3449 18 6 8.0165 6.3957 -1.6683 19 1 7.2476 7.0221 -2.0959 20 6 9.2868 6.9096 -1.4467 21 7 10.2239 6.1460 -0.9261 22 14 9.6662 8.6848 -1.8872 23 1 8.7743 9.5877 -1.1161 24 1 11.0821 8.9854 -1.5557 25 1 9.4437 8.8925 -3.3408 26 6 4.2251 -0.0250 -0.0002 27 6 3.5345 -1.1963 0.0061 28 6 2.1271 -1.1711 0.0063 29 8 1.5031 -2.2190 0.0115 30 1 -0.3633 -1.0276 0.0054 31 1 -0.3634 0.5186 0.8871 32 1 -0.3633 0.5090 -0.8928 33 1 1.5751 2.1000 0.0004 34 1 6.0714 1.6649 -0.0091 35 1 7.9426 2.5424 0.7229 36 1 7.9586 4.2296 1.3309 37 1 8.5548 1.9063 -1.3595 38 1 9.1279 3.0114 -2.6481 39 1 6.3732 2.1925 -2.0843 40 1 6.9439 3.2994 -3.3725 41 1 11.1118 6.5050 -0.7715 42 1 5.3050 -0.0255 -0.0001 43 1 4.0619 -2.1388 0.0104 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001095677988.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:09 Heat of formation + Delta-G solvation = 19.899295 kcal Electronic energy + Delta-G solvation = -26683.580418 eV Core-core repulsion = 22923.983253 eV Total energy + Delta-G solvation = -3759.597165 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 8.74 seconds Orbital eigenvalues (eV) -41.77510 -39.98370 -38.42608 -37.00867 -35.08968 -33.90151 -32.32763 -30.42441 -29.34715 -29.02833 -28.30492 -27.35305 -24.75880 -23.99317 -23.39758 -21.57011 -20.84869 -19.57031 -18.74631 -18.26008 -17.64276 -17.06322 -16.81024 -16.47428 -15.92191 -15.50660 -15.03240 -14.80131 -14.55829 -14.16518 -13.98009 -13.81345 -13.69197 -13.38484 -12.94396 -12.36786 -12.35416 -12.30499 -11.89979 -11.77102 -11.51939 -11.06137 -10.93556 -10.91904 -10.83791 -10.51636 -10.35815 -10.21999 -10.12739 -9.93024 -9.78331 -9.42738 -9.27298 -8.95112 -8.61651 -8.27612 -6.93318 -5.74307 -3.12331 0.46256 1.10329 2.17042 2.91016 3.35080 3.40143 3.43874 3.45206 3.56148 4.24358 4.33945 4.44518 4.49565 4.69954 4.76087 4.78133 4.97069 5.17828 5.20779 5.36815 5.47825 5.60406 5.65411 5.77125 5.79146 5.83397 5.94441 6.04182 6.05130 6.08653 6.27048 6.29950 6.51042 6.57057 6.59658 6.63356 6.78541 6.94121 6.97203 7.23591 7.50249 7.59597 7.69225 7.79635 8.15129 8.39549 9.08846 9.71540 10.51564 11.35216 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.031576 B = 0.002896 C = 0.002760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.531786 B = 9667.054785 C =10142.908069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.047 3.953 2 N -0.492 5.492 3 C 0.204 3.796 4 C -0.245 4.245 5 C 0.570 3.430 6 O -0.547 6.547 7 N -0.705 5.705 8 C 0.129 3.871 9 H 0.085 0.915 10 C -0.139 4.139 11 C 0.153 3.847 12 H 0.155 0.845 13 C -0.138 4.138 14 C -0.130 4.130 15 C 0.129 3.871 16 H 0.085 0.915 17 N -0.590 5.590 18 C -0.211 4.211 19 H 0.079 0.921 20 C -0.012 4.012 21 N -0.924 5.924 22 Si 0.917 3.083 23 H -0.285 1.285 24 H -0.290 1.290 25 H -0.286 1.286 26 C 0.006 3.994 27 C -0.246 4.246 28 C 0.514 3.486 29 O -0.548 6.548 30 H 0.106 0.894 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.180 0.820 34 H 0.394 0.606 35 H 0.054 0.946 36 H 0.067 0.933 37 H 0.044 0.956 38 H 0.055 0.945 39 H 0.050 0.950 40 H 0.051 0.949 41 H 0.254 0.746 42 H 0.139 0.861 43 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.178 -13.076 2.995 18.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 N -0.200 5.200 3 C 0.071 3.929 4 C -0.254 4.254 5 C 0.357 3.643 6 O -0.427 6.427 7 N -0.355 5.355 8 C 0.023 3.977 9 H 0.103 0.897 10 C -0.178 4.178 11 C 0.047 3.953 12 H 0.171 0.829 13 C -0.177 4.177 14 C -0.170 4.170 15 C 0.020 3.980 16 H 0.103 0.897 17 N -0.311 5.311 18 C -0.339 4.339 19 H 0.096 0.904 20 C -0.207 4.207 21 N -0.572 5.572 22 Si 0.747 3.253 23 H -0.212 1.212 24 H -0.216 1.216 25 H -0.213 1.213 26 C -0.016 4.016 27 C -0.267 4.267 28 C 0.317 3.683 29 O -0.430 6.430 30 H 0.124 0.876 31 H 0.103 0.897 32 H 0.103 0.897 33 H 0.197 0.803 34 H 0.229 0.771 35 H 0.073 0.927 36 H 0.086 0.914 37 H 0.062 0.938 38 H 0.074 0.926 39 H 0.068 0.932 40 H 0.069 0.931 41 H 0.065 0.935 42 H 0.157 0.843 43 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -13.841 -12.731 2.969 19.038 hybrid contribution 0.461 0.504 -0.279 0.737 sum -13.380 -12.227 2.690 18.324 Atomic orbital electron populations 1.22337 0.76555 1.06612 1.03859 1.45171 1.09903 1.06851 1.58101 1.22280 0.93078 0.89919 0.87576 1.19580 0.92487 0.94761 1.18538 1.17572 0.82544 0.87493 0.76700 1.90794 1.67387 1.33313 1.51166 1.46082 1.05502 1.10196 1.73764 1.22787 0.92174 0.83166 0.99531 0.89727 1.23363 0.94150 0.99348 1.00978 1.23964 0.98584 0.84840 0.87959 0.82864 1.23222 0.95821 0.98216 1.00442 1.22897 0.96795 0.97923 0.99380 1.23182 0.90839 0.91278 0.92721 0.89723 1.46485 1.05407 1.07779 1.71420 1.19016 0.95792 0.84968 1.34083 0.90362 1.24689 0.95848 0.98396 1.01754 1.69420 1.03181 1.34677 1.49949 0.86110 0.77077 0.83994 0.78081 1.21200 1.21588 1.21273 1.21541 1.00726 0.91025 0.88313 1.21980 0.92235 1.00159 1.12334 1.17300 0.89588 0.82629 0.78799 1.90926 1.69525 1.29996 1.52593 0.87565 0.89743 0.89703 0.80322 0.77097 0.92724 0.91408 0.93775 0.92620 0.93168 0.93058 0.93501 0.84284 0.82822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.28 10.55 59.85 0.63 0.91 16 2 N -0.49 -4.45 2.95 -126.73 -0.37 -4.82 16 3 C 0.20 1.85 9.92 -16.42 -0.16 1.68 16 4 C -0.25 -2.57 5.88 -104.95 -0.62 -3.19 16 5 C 0.57 7.84 7.76 -12.51 -0.10 7.74 16 6 O -0.55 -9.43 16.05 5.27 0.08 -9.34 16 7 N -0.71 -9.51 3.62 -52.14 -0.19 -9.69 16 8 C 0.13 2.27 3.10 -65.10 -0.20 2.06 16 9 H 0.08 1.67 7.71 -51.93 -0.40 1.27 16 10 C -0.14 -2.48 6.25 -23.90 -0.15 -2.63 16 11 C 0.15 3.32 4.72 -62.24 -0.29 3.02 16 12 H 0.15 3.83 5.52 -51.93 -0.29 3.55 16 13 C -0.14 -2.54 6.50 -23.67 -0.15 -2.70 16 14 C -0.13 -2.31 6.34 -24.23 -0.15 -2.46 16 15 C 0.13 2.59 5.29 -62.80 -0.33 2.26 16 16 H 0.08 1.78 8.14 -51.93 -0.42 1.36 16 17 N -0.59 -14.28 2.97 -145.22 -0.43 -14.71 16 18 C -0.21 -5.69 10.59 -15.06 -0.16 -5.85 16 19 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 20 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 21 N -0.92 -25.70 10.46 55.49 0.58 -25.12 16 22 Si 0.92 21.69 29.55 -169.99 -5.02 16.66 16 23 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 24 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 25 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 26 C 0.01 0.05 9.57 -39.11 -0.37 -0.32 16 27 C -0.25 -2.38 9.97 -39.44 -0.39 -2.78 16 28 C 0.51 5.92 7.40 -15.41 -0.11 5.80 16 29 O -0.55 -7.96 16.33 4.96 0.08 -7.88 16 30 H 0.11 0.76 6.83 -51.93 -0.35 0.40 16 31 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.08 0.35 8.14 -51.92 -0.42 -0.08 16 33 H 0.18 1.35 7.59 -52.48 -0.40 0.95 16 34 H 0.39 4.24 6.12 -40.82 -0.25 3.99 16 35 H 0.05 0.80 7.41 -51.93 -0.38 0.42 16 36 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 37 H 0.04 0.68 7.88 -51.93 -0.41 0.27 16 38 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 39 H 0.05 0.75 6.56 -51.93 -0.34 0.41 16 40 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 41 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 42 H 0.14 0.92 6.48 -52.49 -0.34 0.58 16 43 H 0.15 1.28 8.06 -52.49 -0.42 0.86 16 LS Contribution 347.74 15.07 5.24 5.24 Total: -1.00 -33.06 347.74 -8.37 -41.43 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: -5.67 Total: 5.09 kcal Atomic # 6 Polarization: 5.81 SS G_CDS: -2.67 Total: 3.14 kcal Atomic # 7 Polarization: -53.93 SS G_CDS: -0.41 Total: -54.35 kcal Atomic # 8 Polarization: -17.39 SS G_CDS: 0.17 Total: -17.22 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -33.06 -8.37 -41.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095677988.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.329 kcal (2) G-P(sol) polarization free energy of solvation -33.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.429 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 8.74 seconds