Wall clock time and date at job start Tue Mar 31 2020 11:14:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34601 * 119.47630 * 2 1 4 4 C 1.38002 * 120.46040 * 180.30233 * 3 2 1 5 5 C 1.47446 * 120.26244 * 179.68905 * 4 3 2 6 6 O 1.21614 * 119.99717 * 359.72868 * 5 4 3 7 7 N 1.34778 * 120.00371 * 179.72485 * 5 4 3 8 8 C 1.46504 * 120.00279 * 180.02562 * 7 5 4 9 9 H 1.09000 * 110.68136 * 37.01252 * 8 7 5 10 10 C 1.55475 * 110.60770 * 160.15293 * 8 7 5 11 11 C 1.55848 * 103.32492 * 118.41867 * 10 8 7 12 12 H 1.08998 * 116.12899 * 159.23369 * 11 10 8 13 13 C 1.56854 * 105.77510 * 288.56084 * 11 10 8 14 14 C 1.54858 * 103.35524 * 71.45566 * 13 11 10 15 15 C 1.55837 * 110.62408 * 274.02727 * 8 7 5 16 16 H 1.09003 * 115.56577 * 82.69509 * 15 8 7 17 17 N 1.50229 * 101.05130 * 33.01999 * 11 10 8 18 18 C 1.36946 * 130.83735 * 126.07020 * 17 11 10 19 19 H 1.08001 * 119.99777 * 179.66189 * 18 17 11 20 20 C 1.38805 * 119.99877 * 359.66218 * 18 17 11 21 21 N 1.31618 * 120.00131 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 120.00109 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47067 * 59.99638 * 22 20 18 24 24 H 1.48494 * 109.47391 * 180.02562 * 22 20 18 25 25 H 1.48507 * 109.46883 * 300.00188 * 22 20 18 26 26 C 1.41597 * 119.48089 * 359.41629 * 4 3 2 27 27 C 1.35977 * 119.01256 * 0.27236 * 26 4 3 28 28 C 1.34537 * 119.48165 * 179.69020 * 2 1 3 29 29 O 1.21959 * 119.74741 * 0.02562 * 28 2 1 30 30 H 1.08999 * 109.46928 * 180.30128 * 1 2 3 31 31 H 1.08995 * 109.47667 * 300.30867 * 1 2 3 32 32 H 1.09008 * 109.46766 * 60.31034 * 1 2 3 33 33 H 1.08004 * 119.77473 * 0.02562 * 3 2 1 34 34 H 0.96991 * 119.99736 * 359.97438 * 7 5 4 35 35 H 1.09001 * 110.61424 * 0.02562 * 10 8 7 36 36 H 1.09004 * 110.75532 * 236.89958 * 10 8 7 37 37 H 1.09000 * 110.43789 * 313.10823 * 13 11 10 38 38 H 1.08996 * 111.04377 * 190.09588 * 13 11 10 39 39 H 1.08999 * 110.63002 * 241.78564 * 14 13 11 40 40 H 1.08996 * 110.76143 * 118.83089 * 14 13 11 41 41 H 0.97006 * 120.00033 * 179.97438 * 21 20 18 42 42 H 1.07998 * 120.49710 * 180.30043 * 26 4 3 43 43 H 1.07999 * 120.24822 * 179.97438 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1273 1.1718 0.0000 4 6 3.5071 1.1955 -0.0063 5 6 4.2282 2.4816 -0.0132 6 8 3.6068 3.5270 -0.0183 7 7 5.5758 2.4987 -0.0137 8 6 6.2922 3.7766 -0.0199 9 1 5.7704 4.5135 0.5906 10 6 7.7540 3.5869 0.4746 11 6 8.6082 4.0214 -0.7544 12 1 9.6393 4.3065 -0.5457 13 6 8.4290 2.8856 -1.8213 14 6 6.9706 3.0769 -2.3058 15 6 6.4709 4.2986 -1.4774 16 1 5.6162 4.8315 -1.8942 17 7 7.7383 5.0944 -1.3449 18 6 8.0165 6.3957 -1.6683 19 1 7.2476 7.0221 -2.0959 20 6 9.2868 6.9096 -1.4467 21 7 10.2239 6.1460 -0.9261 22 14 9.6662 8.6848 -1.8872 23 1 8.7743 9.5877 -1.1161 24 1 11.0821 8.9854 -1.5557 25 1 9.4437 8.8925 -3.3408 26 6 4.2251 -0.0250 -0.0002 27 6 3.5345 -1.1963 0.0061 28 6 2.1271 -1.1711 0.0063 29 8 1.5031 -2.2190 0.0115 30 1 -0.3633 -1.0276 0.0054 31 1 -0.3634 0.5186 0.8871 32 1 -0.3633 0.5090 -0.8928 33 1 1.5751 2.1000 0.0004 34 1 6.0714 1.6649 -0.0091 35 1 7.9426 2.5424 0.7229 36 1 7.9586 4.2296 1.3309 37 1 8.5548 1.9063 -1.3595 38 1 9.1279 3.0114 -2.6481 39 1 6.3732 2.1925 -2.0843 40 1 6.9439 3.2994 -3.3725 41 1 11.1118 6.5050 -0.7715 42 1 5.3050 -0.0255 -0.0001 43 1 4.0619 -2.1388 0.0104 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001095677988.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:08 Heat of formation + Delta-G solvation = -1.056021 kcal Electronic energy + Delta-G solvation = -26684.489109 eV Core-core repulsion = 22923.983253 eV Total energy + Delta-G solvation = -3760.505856 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.56950 -41.31669 -39.74385 -37.93374 -35.91126 -35.26608 -34.10898 -31.33656 -30.94081 -30.59909 -29.33372 -28.47117 -26.23334 -25.24144 -24.16445 -22.90798 -22.07980 -21.20475 -20.15335 -19.32907 -18.76453 -18.40193 -17.80817 -17.21700 -16.89502 -16.70205 -16.65655 -16.32183 -15.84693 -15.27249 -15.25803 -15.11351 -14.33834 -14.23116 -14.03627 -13.87204 -13.49945 -13.43207 -13.17628 -13.06669 -12.86439 -12.76510 -12.65152 -12.54980 -12.31879 -11.99018 -11.84642 -11.50310 -11.24568 -11.17812 -11.13762 -11.02781 -10.87848 -10.76305 -9.97091 -9.12362 -8.81191 -7.76610 -5.15421 -0.24563 0.26067 1.45745 1.48351 1.50061 1.56056 1.95651 2.25301 2.53328 2.69279 3.36888 3.50959 3.58508 3.67092 3.80673 3.83507 3.99907 4.10002 4.15807 4.21198 4.39655 4.40057 4.46971 4.53190 4.65382 4.74767 4.75698 4.86016 4.92031 4.95807 5.03651 5.07340 5.12656 5.20298 5.26871 5.33886 5.38401 5.51219 5.59152 5.79409 5.84117 5.93358 6.32003 6.66531 6.78996 7.08918 7.32766 7.72888 8.58749 9.29859 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.031576 B = 0.002896 C = 0.002760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.531786 B = 9667.054785 C =10142.908069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.487 5.487 3 C 0.219 3.781 4 C -0.256 4.256 5 C 0.575 3.425 6 O -0.585 6.585 7 N -0.694 5.694 8 C 0.150 3.850 9 H 0.058 0.942 10 C -0.124 4.124 11 C 0.136 3.864 12 H 0.119 0.881 13 C -0.127 4.127 14 C -0.117 4.117 15 C 0.119 3.881 16 H 0.067 0.933 17 N -0.620 5.620 18 C -0.224 4.224 19 H 0.071 0.929 20 C -0.063 4.063 21 N -0.944 5.944 22 Si 0.973 3.027 23 H -0.283 1.283 24 H -0.292 1.292 25 H -0.283 1.283 26 C 0.021 3.979 27 C -0.256 4.256 28 C 0.502 3.498 29 O -0.588 6.588 30 H 0.092 0.908 31 H 0.107 0.893 32 H 0.106 0.894 33 H 0.196 0.804 34 H 0.412 0.588 35 H 0.099 0.901 36 H 0.048 0.952 37 H 0.088 0.912 38 H 0.032 0.968 39 H 0.088 0.912 40 H 0.039 0.961 41 H 0.248 0.752 42 H 0.168 0.832 43 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.039 -14.751 3.215 20.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 N -0.193 5.193 3 C 0.085 3.915 4 C -0.264 4.264 5 C 0.364 3.636 6 O -0.467 6.467 7 N -0.345 5.345 8 C 0.043 3.957 9 H 0.076 0.924 10 C -0.163 4.163 11 C 0.030 3.970 12 H 0.136 0.864 13 C -0.166 4.166 14 C -0.156 4.156 15 C 0.011 3.989 16 H 0.085 0.915 17 N -0.342 5.342 18 C -0.353 4.353 19 H 0.089 0.911 20 C -0.255 4.255 21 N -0.593 5.593 22 Si 0.802 3.198 23 H -0.209 1.209 24 H -0.218 1.218 25 H -0.210 1.210 26 C 0.000 4.000 27 C -0.277 4.277 28 C 0.306 3.694 29 O -0.474 6.474 30 H 0.111 0.889 31 H 0.126 0.874 32 H 0.125 0.875 33 H 0.212 0.788 34 H 0.251 0.749 35 H 0.117 0.883 36 H 0.067 0.933 37 H 0.106 0.894 38 H 0.051 0.949 39 H 0.106 0.894 40 H 0.058 0.942 41 H 0.058 0.942 42 H 0.186 0.814 43 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -14.728 -14.453 3.189 20.880 hybrid contribution 0.608 1.046 -0.347 1.259 sum -14.120 -13.407 2.843 19.678 Atomic orbital electron populations 1.22598 0.74736 1.06443 1.06160 1.45264 1.11157 1.06263 1.56635 1.22499 0.92982 0.90288 0.85695 1.19319 0.92934 0.93657 1.20510 1.17920 0.82291 0.88054 0.75383 1.90791 1.68093 1.35066 1.52760 1.45777 1.05571 1.09379 1.73821 1.22182 0.92091 0.84455 0.96984 0.92352 1.23187 0.93213 1.01441 0.98491 1.23894 0.97258 0.85386 0.90452 0.86390 1.23114 0.95560 0.99057 0.98849 1.22804 0.96649 0.97997 0.98141 1.23331 0.89053 0.91671 0.94807 0.91528 1.46749 1.07701 1.07608 1.72111 1.19260 0.95775 0.86705 1.33546 0.91124 1.25372 0.95927 1.01679 1.02567 1.69657 1.03000 1.35642 1.51026 0.85224 0.76494 0.80272 0.77762 1.20942 1.21781 1.20962 1.21702 1.01997 0.89681 0.86626 1.22063 0.91476 1.01099 1.13063 1.17686 0.90425 0.82669 0.78573 1.90908 1.70393 1.31359 1.54727 0.88926 0.87415 0.87511 0.78750 0.74895 0.88322 0.93327 0.89359 0.94884 0.89354 0.94233 0.94194 0.81422 0.81689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.39 10.55 127.77 1.35 1.74 16 2 N -0.49 -7.63 2.95 -673.10 -1.99 -9.62 16 3 C 0.22 3.32 9.92 84.21 0.84 4.16 16 4 C -0.26 -4.51 5.88 -20.08 -0.12 -4.63 16 5 C 0.57 14.18 7.76 86.67 0.67 14.85 16 6 O -0.59 -19.29 16.05 -4.08 -0.07 -19.35 16 7 N -0.69 -16.30 3.62 -437.11 -1.58 -17.88 16 8 C 0.15 5.03 3.10 46.82 0.15 5.18 16 9 H 0.06 2.30 7.71 -2.39 -0.02 2.28 16 10 C -0.12 -4.20 6.25 32.43 0.20 -4.00 16 11 C 0.14 5.83 4.72 46.60 0.22 6.05 16 12 H 0.12 6.02 5.52 -2.39 -0.01 6.00 16 13 C -0.13 -4.39 6.50 32.58 0.21 -4.17 16 14 C -0.12 -3.84 6.34 32.21 0.20 -3.64 16 15 C 0.12 4.73 5.29 46.22 0.24 4.98 16 16 H 0.07 2.84 8.14 -2.39 -0.02 2.82 16 17 N -0.62 -30.41 2.97 -613.35 -1.82 -32.24 16 18 C -0.22 -12.43 10.59 84.03 0.89 -11.54 16 19 H 0.07 3.88 7.83 -2.91 -0.02 3.86 16 20 C -0.06 -3.48 5.50 84.86 0.47 -3.02 16 21 N -0.94 -53.95 10.46 21.65 0.23 -53.73 16 22 Si 0.97 45.56 29.55 68.60 2.03 47.58 16 23 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 24 H -0.29 -13.61 7.11 99.48 0.71 -12.91 16 25 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 26 C 0.02 0.29 9.57 22.57 0.22 0.51 16 27 C -0.26 -4.23 9.97 22.36 0.22 -4.01 16 28 C 0.50 10.63 7.40 84.90 0.63 11.26 16 29 O -0.59 -16.65 16.33 -5.18 -0.08 -16.73 16 30 H 0.09 1.22 6.83 -2.39 -0.02 1.20 16 31 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.11 0.58 8.14 -2.38 -0.02 0.56 16 33 H 0.20 2.35 7.59 -2.91 -0.02 2.33 16 34 H 0.41 6.68 6.12 -92.71 -0.57 6.11 16 35 H 0.10 2.45 7.41 -2.39 -0.02 2.43 16 36 H 0.05 1.84 8.14 -2.38 -0.02 1.82 16 37 H 0.09 2.28 7.88 -2.39 -0.02 2.26 16 38 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.09 2.23 6.56 -2.39 -0.02 2.21 16 40 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.25 13.89 8.31 -92.70 -0.77 13.12 16 42 H 0.17 1.27 6.48 -2.91 -0.02 1.25 16 43 H 0.17 2.30 8.06 -2.91 -0.02 2.27 16 Total: -1.00 -75.61 347.74 3.58 -72.02 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: 0.48 Total: 16.22 kcal Atomic # 6 Polarization: 7.33 SS G_CDS: 6.39 Total: 13.72 kcal Atomic # 7 Polarization: -108.30 SS G_CDS: -5.16 Total: -113.46 kcal Atomic # 8 Polarization: -35.93 SS G_CDS: -0.15 Total: -36.08 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.58 kcal Total: -75.61 3.58 -72.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095677988.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.966 kcal (2) G-P(sol) polarization free energy of solvation -75.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds