Wall clock time and date at job start Tue Mar 31 2020 11:19:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.35583 * 118.80708 * 2 1 4 4 C 1.34863 * 121.79822 * 179.97438 * 3 2 1 5 5 C 1.41674 * 119.33963 * 359.75237 * 4 3 2 6 6 O 1.22088 * 121.06592 * 180.25398 * 5 4 3 7 7 C 1.47100 * 117.86221 * 0.45947 * 5 4 3 8 8 C 1.47285 * 120.87881 * 179.82052 * 7 5 4 9 9 O 1.21621 * 120.00423 * 359.72342 * 8 7 5 10 10 N 1.34778 * 119.99758 * 179.71476 * 8 7 5 11 11 C 1.46499 * 119.99921 * 180.02562 * 10 8 7 12 12 H 1.08997 * 110.68453 * 37.00247 * 11 10 8 13 13 C 1.55870 * 110.10242 * 160.86891 * 11 10 8 14 14 C 1.55840 * 103.53320 * 118.85859 * 13 11 10 15 15 H 1.08997 * 115.56031 * 158.20791 * 14 13 11 16 16 C 1.55838 * 105.74508 * 287.39194 * 14 13 11 17 17 C 1.55868 * 102.97610 * 71.12983 * 16 14 13 18 18 C 1.55850 * 110.62699 * 274.01984 * 11 10 8 19 19 H 1.08998 * 115.56377 * 82.69724 * 18 11 10 20 20 N 1.50240 * 101.04759 * 32.34224 * 14 13 11 21 21 C 1.36929 * 130.84289 * 126.01449 * 20 14 13 22 22 H 1.08008 * 120.00137 * 180.02562 * 21 20 14 23 23 C 1.38811 * 120.00010 * 0.02562 * 21 20 14 24 24 N 1.31612 * 120.00213 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 120.00136 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47238 * 60.00010 * 25 23 21 27 27 H 1.48497 * 109.47363 * 179.97438 * 25 23 21 28 28 H 1.48497 * 109.47240 * 300.00052 * 25 23 21 29 29 C 1.34350 * 118.79981 * 179.97438 * 2 1 3 30 30 H 1.09002 * 109.47817 * 270.03086 * 1 2 3 31 31 H 1.09004 * 109.46655 * 30.03065 * 1 2 3 32 32 H 1.09005 * 109.47337 * 150.02923 * 1 2 3 33 33 H 1.07998 * 119.10221 * 359.97438 * 3 2 1 34 34 H 1.07999 * 120.33122 * 180.02562 * 4 3 2 35 35 H 0.96993 * 119.99991 * 0.02562 * 10 8 7 36 36 H 1.09003 * 111.09846 * 0.09786 * 13 11 10 37 37 H 1.09001 * 110.21092 * 237.20613 * 13 11 10 38 38 H 1.08998 * 110.62880 * 190.50093 * 16 14 13 39 39 H 1.08999 * 110.62692 * 313.51686 * 16 14 13 40 40 H 1.08994 * 111.10374 * 242.11586 * 17 16 14 41 41 H 1.08995 * 110.07231 * 119.15123 * 17 16 14 42 42 H 0.97004 * 120.00626 * 180.02562 * 24 23 21 43 43 H 1.07997 * 119.81775 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1183 1.1880 0.0000 4 6 3.4651 1.2584 0.0005 5 6 4.2228 0.0613 0.0064 6 8 5.4433 0.0883 0.0117 7 6 3.4916 -1.2151 0.0013 8 6 4.2127 -2.4993 0.0030 9 8 5.4288 -2.5139 0.0036 10 7 3.5249 -3.6584 0.0041 11 6 4.2421 -4.9358 0.0063 12 1 5.1403 -4.8719 0.6206 13 6 3.2982 -6.0793 0.4869 14 6 3.2424 -7.0441 -0.7357 15 1 2.9525 -8.0707 -0.5118 16 6 2.3743 -6.3188 -1.8075 17 6 3.3016 -5.1596 -2.2830 18 6 4.6011 -5.3664 -1.4479 19 1 5.5032 -4.9165 -1.8625 20 7 4.6192 -6.8623 -1.3090 21 6 5.5913 -7.7779 -1.6115 22 1 6.5339 -7.4487 -2.0236 23 6 5.3655 -9.1293 -1.3886 24 7 4.2168 -9.5306 -0.8869 25 14 6.6920 -10.3784 -1.8007 26 1 7.9130 -10.0834 -1.0087 27 1 6.2067 -11.7427 -1.4714 28 1 7.0110 -10.3021 -3.2490 29 6 2.1122 -1.1773 0.0005 30 1 -0.3635 0.0006 1.0276 31 1 -0.3633 0.8898 -0.5143 32 1 -0.3634 -0.8903 -0.5134 33 1 1.5445 2.1030 -0.0004 34 1 3.9611 2.2178 0.0009 35 1 2.5550 -3.6467 0.0034 36 1 2.3046 -5.6963 0.7193 37 1 3.7270 -6.5822 1.3537 38 1 2.1278 -6.9965 -2.6248 39 1 1.4683 -5.9130 -1.3574 40 1 2.8572 -4.1880 -2.0674 41 1 3.5097 -5.2600 -3.3481 42 1 4.0591 -10.4749 -0.7308 43 1 1.5498 -2.0993 0.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001095739013.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:32 Heat of formation + Delta-G solvation = 27.578751 kcal Electronic energy + Delta-G solvation = -26946.499874 eV Core-core repulsion = 23187.235715 eV Total energy + Delta-G solvation = -3759.264159 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.22310 -39.68696 -38.29137 -37.49155 -33.88046 -32.79772 -32.48184 -31.79389 -29.18438 -28.93469 -27.68975 -27.08501 -24.95877 -24.02145 -22.95427 -21.43141 -20.75004 -19.47985 -18.63245 -18.14014 -17.55682 -17.05088 -16.67671 -16.10620 -15.82557 -15.17405 -14.88400 -14.71558 -14.68544 -14.16804 -13.90030 -13.70666 -13.50582 -13.41047 -13.00889 -12.60120 -12.30996 -12.25996 -12.16114 -11.71166 -11.43834 -11.01486 -10.86688 -10.85273 -10.78194 -10.16392 -10.06204 -9.95655 -9.80439 -9.73221 -9.34518 -9.28405 -9.04881 -8.89485 -8.43421 -8.09877 -6.86309 -5.68380 -3.05734 0.71628 1.12549 2.09331 3.16806 3.43995 3.47780 3.48233 3.52107 3.87865 3.92173 4.11980 4.36636 4.49746 4.52301 4.65562 4.81183 4.88657 5.18060 5.25933 5.38275 5.43926 5.54077 5.61134 5.86674 5.90836 5.95762 6.10184 6.12996 6.19043 6.29694 6.34736 6.37612 6.49481 6.56952 6.62847 6.75582 6.87752 7.02200 7.06083 7.31605 7.57588 7.79477 7.96509 8.11401 8.21064 8.73242 9.15345 9.77762 10.58434 11.41325 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.024913 B = 0.003284 C = 0.003025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.634853 B = 8523.973136 C = 9254.382150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 N -0.477 5.477 3 C 0.125 3.875 4 C -0.267 4.267 5 C 0.403 3.597 6 O -0.476 6.476 7 C -0.288 4.288 8 C 0.565 3.435 9 O -0.511 6.511 10 N -0.717 5.717 11 C 0.131 3.869 12 H 0.084 0.916 13 C -0.139 4.139 14 C 0.153 3.847 15 H 0.154 0.846 16 C -0.135 4.135 17 C -0.129 4.129 18 C 0.128 3.872 19 H 0.085 0.915 20 N -0.591 5.591 21 C -0.208 4.208 22 H 0.079 0.921 23 C -0.013 4.013 24 N -0.926 5.926 25 Si 0.917 3.083 26 H -0.285 1.285 27 H -0.290 1.290 28 H -0.286 1.286 29 C 0.165 3.835 30 H 0.080 0.920 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.163 0.837 34 H 0.152 0.848 35 H 0.385 0.615 36 H 0.052 0.948 37 H 0.065 0.935 38 H 0.056 0.944 39 H 0.042 0.958 40 H 0.050 0.950 41 H 0.049 0.951 42 H 0.253 0.747 43 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.858 20.236 2.790 26.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 N -0.165 5.165 3 C 0.001 3.999 4 C -0.292 4.292 5 C 0.288 3.712 6 O -0.356 6.356 7 C -0.299 4.299 8 C 0.351 3.649 9 O -0.386 6.386 10 N -0.370 5.370 11 C 0.026 3.974 12 H 0.103 0.897 13 C -0.178 4.178 14 C 0.046 3.954 15 H 0.170 0.830 16 C -0.174 4.174 17 C -0.169 4.169 18 C 0.019 3.981 19 H 0.103 0.897 20 N -0.311 5.311 21 C -0.336 4.336 22 H 0.097 0.903 23 C -0.208 4.208 24 N -0.574 5.574 25 Si 0.747 3.253 26 H -0.212 1.212 27 H -0.216 1.216 28 H -0.213 1.213 29 C 0.035 3.965 30 H 0.099 0.901 31 H 0.110 0.890 32 H 0.111 0.889 33 H 0.180 0.820 34 H 0.170 0.830 35 H 0.219 0.781 36 H 0.071 0.929 37 H 0.083 0.917 38 H 0.075 0.925 39 H 0.060 0.940 40 H 0.068 0.932 41 H 0.068 0.932 42 H 0.064 0.936 43 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -15.342 19.914 2.773 25.291 hybrid contribution -0.113 -0.495 -0.238 0.561 sum -15.456 19.419 2.535 24.948 Atomic orbital electron populations 1.22483 0.76233 1.05625 1.04335 1.42626 1.08519 1.04488 1.60822 1.21659 0.94300 0.88303 0.95662 1.22499 0.93159 1.01434 1.12081 1.18222 0.89357 0.87022 0.76559 1.90839 1.14316 1.88924 1.41539 1.22692 0.92179 0.97630 1.17425 1.17493 0.87371 0.82526 0.77545 1.90860 1.12890 1.86787 1.48015 1.46164 1.09046 1.06034 1.75765 1.22813 0.95080 0.80153 0.99376 0.89744 1.23449 0.96587 0.96747 1.01061 1.23742 0.84229 0.99284 0.88169 0.82959 1.23197 0.96503 0.97158 1.00552 1.23054 0.97671 0.96778 0.99357 1.23206 0.95670 0.86309 0.92937 0.89703 1.46480 1.13299 0.99125 1.72215 1.19045 0.93811 0.86285 1.34422 0.90338 1.24675 0.97527 0.96617 1.01977 1.69418 1.22840 1.14464 1.50718 0.86105 0.80740 0.80367 0.78052 1.21195 1.21634 1.21287 1.22228 0.93280 0.88995 0.92014 0.90096 0.89040 0.88910 0.81992 0.83034 0.78054 0.92914 0.91667 0.92523 0.93966 0.93187 0.93173 0.93602 0.81769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.03 10.53 59.84 0.63 0.66 16 2 N -0.48 -2.40 2.97 -124.39 -0.37 -2.77 16 3 C 0.12 0.69 10.17 -17.09 -0.17 0.51 16 4 C -0.27 -2.65 10.01 -39.47 -0.40 -3.04 16 5 C 0.40 6.34 6.97 -34.68 -0.24 6.10 16 6 O -0.48 -10.10 16.41 -15.18 -0.25 -10.35 16 7 C -0.29 -4.01 6.05 -102.72 -0.62 -4.63 16 8 C 0.56 10.09 7.77 -12.58 -0.10 9.99 16 9 O -0.51 -12.01 15.31 -14.76 -0.23 -12.23 16 10 N -0.72 -11.06 3.62 -51.98 -0.19 -11.25 16 11 C 0.13 2.56 3.17 -64.88 -0.21 2.36 16 12 H 0.08 1.89 7.70 -51.93 -0.40 1.49 16 13 C -0.14 -2.62 6.21 -23.68 -0.15 -2.77 16 14 C 0.15 3.42 4.67 -62.81 -0.29 3.12 16 15 H 0.15 3.90 5.52 -51.93 -0.29 3.61 16 16 C -0.13 -2.55 6.53 -23.68 -0.15 -2.70 16 17 C -0.13 -2.41 6.37 -23.68 -0.15 -2.56 16 18 C 0.13 2.79 5.30 -62.79 -0.33 2.46 16 19 H 0.08 1.99 8.14 -51.93 -0.42 1.57 16 20 N -0.59 -15.02 2.97 -145.81 -0.43 -15.45 16 21 C -0.21 -5.85 10.59 -15.06 -0.16 -6.01 16 22 H 0.08 2.19 7.83 -52.48 -0.41 1.78 16 23 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 24 N -0.93 -26.40 10.46 55.49 0.58 -25.82 16 25 Si 0.92 22.43 29.55 -169.99 -5.02 17.40 16 26 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 27 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 28 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 29 C 0.16 1.31 9.79 -16.54 -0.16 1.15 16 30 H 0.08 -0.03 8.14 -51.93 -0.42 -0.46 16 31 H 0.09 -0.12 7.96 -51.93 -0.41 -0.53 16 32 H 0.09 -0.04 7.96 -51.93 -0.41 -0.45 16 33 H 0.16 0.18 7.97 -52.49 -0.42 -0.24 16 34 H 0.15 1.28 8.06 -52.49 -0.42 0.86 16 35 H 0.39 4.40 6.10 -40.82 -0.25 4.15 16 36 H 0.05 0.80 7.38 -51.93 -0.38 0.42 16 37 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 38 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.04 0.65 7.85 -51.93 -0.41 0.24 16 40 H 0.05 0.79 6.55 -51.93 -0.34 0.45 16 41 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 43 H 0.17 0.79 6.35 -52.49 -0.33 0.45 16 LS Contribution 348.49 15.07 5.25 5.25 Total: -1.00 -39.66 348.49 -8.99 -48.65 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: -5.73 Total: 2.40 kcal Atomic # 6 Polarization: 6.77 SS G_CDS: -2.60 Total: 4.17 kcal Atomic # 7 Polarization: -54.88 SS G_CDS: -0.41 Total: -55.29 kcal Atomic # 8 Polarization: -22.10 SS G_CDS: -0.47 Total: -22.58 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -39.66 -8.99 -48.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095739013.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.224 kcal (2) G-P(sol) polarization free energy of solvation -39.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.645 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds