Wall clock time and date at job start Tue Mar 31 2020 11:19:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.35583 * 118.80708 * 2 1 4 4 C 1.34863 * 121.79822 * 179.97438 * 3 2 1 5 5 C 1.41674 * 119.33963 * 359.75237 * 4 3 2 6 6 O 1.22088 * 121.06592 * 180.25398 * 5 4 3 7 7 C 1.47100 * 117.86221 * 0.45947 * 5 4 3 8 8 C 1.47285 * 120.87881 * 179.82052 * 7 5 4 9 9 O 1.21621 * 120.00423 * 359.72342 * 8 7 5 10 10 N 1.34778 * 119.99758 * 179.71476 * 8 7 5 11 11 C 1.46499 * 119.99921 * 180.02562 * 10 8 7 12 12 H 1.08997 * 110.68453 * 37.00247 * 11 10 8 13 13 C 1.55870 * 110.10242 * 160.86891 * 11 10 8 14 14 C 1.55840 * 103.53320 * 118.85859 * 13 11 10 15 15 H 1.08997 * 115.56031 * 158.20791 * 14 13 11 16 16 C 1.55838 * 105.74508 * 287.39194 * 14 13 11 17 17 C 1.55868 * 102.97610 * 71.12983 * 16 14 13 18 18 C 1.55850 * 110.62699 * 274.01984 * 11 10 8 19 19 H 1.08998 * 115.56377 * 82.69724 * 18 11 10 20 20 N 1.50240 * 101.04759 * 32.34224 * 14 13 11 21 21 C 1.36929 * 130.84289 * 126.01449 * 20 14 13 22 22 H 1.08008 * 120.00137 * 180.02562 * 21 20 14 23 23 C 1.38811 * 120.00010 * 0.02562 * 21 20 14 24 24 N 1.31612 * 120.00213 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 120.00136 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47238 * 60.00010 * 25 23 21 27 27 H 1.48497 * 109.47363 * 179.97438 * 25 23 21 28 28 H 1.48497 * 109.47240 * 300.00052 * 25 23 21 29 29 C 1.34350 * 118.79981 * 179.97438 * 2 1 3 30 30 H 1.09002 * 109.47817 * 270.03086 * 1 2 3 31 31 H 1.09004 * 109.46655 * 30.03065 * 1 2 3 32 32 H 1.09005 * 109.47337 * 150.02923 * 1 2 3 33 33 H 1.07998 * 119.10221 * 359.97438 * 3 2 1 34 34 H 1.07999 * 120.33122 * 180.02562 * 4 3 2 35 35 H 0.96993 * 119.99991 * 0.02562 * 10 8 7 36 36 H 1.09003 * 111.09846 * 0.09786 * 13 11 10 37 37 H 1.09001 * 110.21092 * 237.20613 * 13 11 10 38 38 H 1.08998 * 110.62880 * 190.50093 * 16 14 13 39 39 H 1.08999 * 110.62692 * 313.51686 * 16 14 13 40 40 H 1.08994 * 111.10374 * 242.11586 * 17 16 14 41 41 H 1.08995 * 110.07231 * 119.15123 * 17 16 14 42 42 H 0.97004 * 120.00626 * 180.02562 * 24 23 21 43 43 H 1.07997 * 119.81775 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1183 1.1880 0.0000 4 6 3.4651 1.2584 0.0005 5 6 4.2228 0.0613 0.0064 6 8 5.4433 0.0883 0.0117 7 6 3.4916 -1.2151 0.0013 8 6 4.2127 -2.4993 0.0030 9 8 5.4288 -2.5139 0.0036 10 7 3.5249 -3.6584 0.0041 11 6 4.2421 -4.9358 0.0063 12 1 5.1403 -4.8719 0.6206 13 6 3.2982 -6.0793 0.4869 14 6 3.2424 -7.0441 -0.7357 15 1 2.9525 -8.0707 -0.5118 16 6 2.3743 -6.3188 -1.8075 17 6 3.3016 -5.1596 -2.2830 18 6 4.6011 -5.3664 -1.4479 19 1 5.5032 -4.9165 -1.8625 20 7 4.6192 -6.8623 -1.3090 21 6 5.5913 -7.7779 -1.6115 22 1 6.5339 -7.4487 -2.0236 23 6 5.3655 -9.1293 -1.3886 24 7 4.2168 -9.5306 -0.8869 25 14 6.6920 -10.3784 -1.8007 26 1 7.9130 -10.0834 -1.0087 27 1 6.2067 -11.7427 -1.4714 28 1 7.0110 -10.3021 -3.2490 29 6 2.1122 -1.1773 0.0005 30 1 -0.3635 0.0006 1.0276 31 1 -0.3633 0.8898 -0.5143 32 1 -0.3634 -0.8903 -0.5134 33 1 1.5445 2.1030 -0.0004 34 1 3.9611 2.2178 0.0009 35 1 2.5550 -3.6467 0.0034 36 1 2.3046 -5.6963 0.7193 37 1 3.7270 -6.5822 1.3537 38 1 2.1278 -6.9965 -2.6248 39 1 1.4683 -5.9130 -1.3574 40 1 2.8572 -4.1880 -2.0674 41 1 3.5097 -5.2600 -3.3481 42 1 4.0591 -10.4749 -0.7308 43 1 1.5498 -2.0993 0.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001095739013.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:31 Heat of formation + Delta-G solvation = -1.224947 kcal Electronic energy + Delta-G solvation = -26947.748896 eV Core-core repulsion = 23187.235715 eV Total energy + Delta-G solvation = -3760.513181 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.03560 -41.14644 -39.58943 -38.70254 -35.46963 -34.32953 -33.43957 -32.83298 -30.96414 -30.58292 -29.16240 -27.60239 -26.29432 -25.51611 -23.82567 -22.83025 -22.12621 -21.22712 -20.18610 -19.25459 -18.71878 -18.29637 -17.68586 -16.94505 -16.76175 -16.65168 -16.51031 -16.24725 -15.83578 -15.53318 -15.24529 -14.81956 -14.67790 -14.18826 -14.05095 -13.85794 -13.48634 -13.44837 -13.18297 -13.12766 -12.88880 -12.79090 -12.60789 -12.59622 -12.33982 -12.00493 -11.90736 -11.50586 -11.22562 -11.07524 -10.97531 -10.80032 -10.67437 -10.26482 -9.97731 -9.01438 -8.83187 -7.80057 -5.18703 -0.11438 0.43620 1.44546 1.47327 1.53284 1.60727 1.99012 2.19728 2.50458 2.87389 3.32860 3.36956 3.51983 3.73584 3.84461 3.92484 3.98981 4.11935 4.16103 4.33050 4.39733 4.47940 4.52476 4.63651 4.64668 4.70258 4.74667 4.83053 4.85053 4.98271 4.99296 5.06408 5.16385 5.24452 5.33455 5.40488 5.48578 5.57344 5.77087 5.79470 5.85157 5.90279 6.29642 6.74744 7.06858 7.16136 7.47092 7.68707 8.55429 9.26323 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.024913 B = 0.003284 C = 0.003025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.634853 B = 8523.973136 C = 9254.382150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.458 5.458 3 C 0.169 3.831 4 C -0.302 4.302 5 C 0.375 3.625 6 O -0.573 6.573 7 C -0.351 4.351 8 C 0.562 3.438 9 O -0.587 6.587 10 N -0.694 5.694 11 C 0.148 3.852 12 H 0.041 0.959 13 C -0.120 4.120 14 C 0.137 3.863 15 H 0.123 0.877 16 C -0.120 4.120 17 C -0.113 4.113 18 C 0.113 3.887 19 H 0.049 0.951 20 N -0.621 5.621 21 C -0.230 4.230 22 H 0.063 0.937 23 C -0.059 4.059 24 N -0.941 5.941 25 Si 0.974 3.026 26 H -0.287 1.287 27 H -0.285 1.285 28 H -0.283 1.283 29 C 0.222 3.778 30 H 0.102 0.898 31 H 0.121 0.879 32 H 0.113 0.887 33 H 0.226 0.774 34 H 0.156 0.844 35 H 0.412 0.588 36 H 0.108 0.892 37 H 0.043 0.957 38 H 0.038 0.962 39 H 0.098 0.902 40 H 0.090 0.910 41 H 0.037 0.963 42 H 0.251 0.749 43 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.412 22.399 2.955 32.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 N -0.140 5.140 3 C 0.043 3.957 4 C -0.325 4.325 5 C 0.268 3.732 6 O -0.462 6.462 7 C -0.361 4.361 8 C 0.352 3.648 9 O -0.467 6.467 10 N -0.349 5.349 11 C 0.041 3.959 12 H 0.059 0.941 13 C -0.160 4.160 14 C 0.031 3.969 15 H 0.140 0.860 16 C -0.159 4.159 17 C -0.152 4.152 18 C 0.005 3.995 19 H 0.067 0.933 20 N -0.343 5.343 21 C -0.359 4.359 22 H 0.081 0.919 23 C -0.252 4.252 24 N -0.590 5.590 25 Si 0.803 3.197 26 H -0.214 1.214 27 H -0.211 1.211 28 H -0.209 1.209 29 C 0.087 3.913 30 H 0.120 0.880 31 H 0.140 0.860 32 H 0.132 0.868 33 H 0.243 0.757 34 H 0.173 0.827 35 H 0.251 0.749 36 H 0.127 0.873 37 H 0.062 0.938 38 H 0.057 0.943 39 H 0.116 0.884 40 H 0.108 0.892 41 H 0.056 0.944 42 H 0.060 0.940 43 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -22.059 22.134 2.940 31.387 hybrid contribution 1.655 -1.034 -0.270 1.970 sum -20.404 21.100 2.670 29.473 Atomic orbital electron populations 1.23062 0.71799 1.08372 1.06623 1.43350 1.11083 1.03542 1.56028 1.22435 0.92900 0.90375 0.89966 1.22363 0.95058 0.99435 1.15649 1.19142 0.88953 0.89747 0.75341 1.90785 1.17727 1.90172 1.47551 1.22132 0.94624 0.94685 1.24685 1.18170 0.86773 0.84159 0.75695 1.90824 1.16487 1.87841 1.51516 1.45728 1.09983 1.03895 1.75251 1.22238 0.94519 0.82354 0.96828 0.94098 1.23285 0.98877 0.95182 0.98613 1.23727 0.83418 0.99124 0.90613 0.86004 1.23081 0.97697 0.96230 0.98851 1.22951 0.95612 0.98813 0.97858 1.23313 0.96294 0.84715 0.95153 0.93306 1.46754 1.14261 1.00196 1.73072 1.19227 0.94393 0.87613 1.34635 0.91906 1.25348 0.99570 0.97856 1.02405 1.69628 1.23778 1.14327 1.51253 0.85218 0.78421 0.78313 0.77756 1.21376 1.21078 1.20894 1.22644 0.91005 0.91710 0.85984 0.87950 0.86038 0.86806 0.75740 0.82675 0.74914 0.87337 0.93774 0.94335 0.88374 0.89174 0.94416 0.93980 0.77201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 -0.34 10.53 127.77 1.34 1.01 16 2 N -0.46 -1.26 2.97 -547.47 -1.63 -2.88 16 3 C 0.17 0.85 10.17 83.34 0.85 1.70 16 4 C -0.30 -5.60 10.01 22.34 0.22 -5.37 16 5 C 0.37 12.52 6.97 25.45 0.18 12.69 16 6 O -0.57 -27.51 16.41 13.53 0.22 -27.29 16 7 C -0.35 -9.50 6.05 -18.63 -0.11 -9.61 16 8 C 0.56 20.78 7.77 86.62 0.67 21.45 16 9 O -0.59 -30.49 15.31 15.04 0.23 -30.26 16 10 N -0.69 -20.33 3.62 -436.60 -1.58 -21.91 16 11 C 0.15 5.88 3.17 46.97 0.15 6.03 16 12 H 0.04 1.99 7.70 -2.39 -0.02 1.97 16 13 C -0.12 -4.36 6.21 32.57 0.20 -4.16 16 14 C 0.14 6.08 4.67 46.22 0.22 6.29 16 15 H 0.12 6.29 5.52 -2.39 -0.01 6.28 16 16 C -0.12 -4.16 6.53 32.57 0.21 -3.95 16 17 C -0.11 -4.03 6.37 32.57 0.21 -3.82 16 18 C 0.11 5.17 5.30 46.23 0.24 5.42 16 19 H 0.05 2.52 8.14 -2.39 -0.02 2.50 16 20 N -0.62 -32.90 2.97 -615.23 -1.83 -34.73 16 21 C -0.23 -13.67 10.59 84.03 0.89 -12.78 16 22 H 0.06 3.78 7.83 -2.91 -0.02 3.76 16 23 C -0.06 -3.41 5.50 84.86 0.47 -2.94 16 24 N -0.94 -55.00 10.46 21.65 0.23 -54.77 16 25 Si 0.97 47.65 29.55 68.60 2.03 49.68 16 26 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 27 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 28 H -0.28 -13.54 7.11 99.48 0.71 -12.83 16 29 C 0.22 2.27 9.79 84.25 0.83 3.10 16 30 H 0.10 -1.06 8.14 -2.39 -0.02 -1.08 16 31 H 0.12 -1.54 7.96 -2.38 -0.02 -1.55 16 32 H 0.11 -1.23 7.96 -2.38 -0.02 -1.25 16 33 H 0.23 -1.51 7.97 -2.91 -0.02 -1.54 16 34 H 0.16 2.61 8.06 -2.91 -0.02 2.59 16 35 H 0.41 7.17 6.10 -92.71 -0.57 6.60 16 36 H 0.11 2.70 7.38 -2.39 -0.02 2.68 16 37 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.10 2.35 7.85 -2.39 -0.02 2.33 16 40 H 0.09 2.46 6.55 -2.39 -0.02 2.44 16 41 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 42 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 43 H 0.21 0.20 6.35 -2.91 -0.02 0.18 16 Total: -1.00 -106.87 348.49 4.72 -102.15 By element: Atomic # 1 Polarization: 4.48 SS G_CDS: 0.48 Total: 4.96 kcal Atomic # 6 Polarization: 8.49 SS G_CDS: 6.57 Total: 15.06 kcal Atomic # 7 Polarization: -109.49 SS G_CDS: -4.81 Total: -114.30 kcal Atomic # 8 Polarization: -58.00 SS G_CDS: 0.45 Total: -57.55 kcal Atomic # 14 Polarization: 47.65 SS G_CDS: 2.03 Total: 49.68 kcal Total: -106.87 4.72 -102.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095739013.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.926 kcal (2) G-P(sol) polarization free energy of solvation -106.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -102.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds