Wall clock time and date at job start Tue Mar 31 2020 11:43:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35750 * 116.99917 * 2 1 4 4 C 1.39211 * 120.81220 * 359.97438 * 3 2 1 5 5 C 1.38315 * 119.28449 * 179.97438 * 4 3 2 6 6 N 1.31616 * 120.97610 * 0.02562 * 5 4 3 7 7 C 1.32805 * 121.77599 * 359.97412 * 6 5 4 8 8 C 1.48176 * 119.69322 * 179.97438 * 7 6 5 9 9 O 1.21511 * 120.00164 * 180.02562 * 8 7 6 10 10 N 1.34777 * 120.00479 * 0.02562 * 8 7 6 11 11 C 1.46502 * 120.00452 * 179.97438 * 10 8 7 12 12 H 1.09005 * 110.55598 * 42.57006 * 11 10 8 13 13 C 1.54852 * 110.76491 * 165.56378 * 11 10 8 14 14 C 1.55842 * 103.44298 * 118.55522 * 13 11 10 15 15 H 1.08998 * 115.55800 * 158.81093 * 14 13 11 16 16 C 1.55841 * 105.06851 * 287.42509 * 14 13 11 17 17 C 1.56687 * 102.59991 * 72.29985 * 16 14 13 18 18 C 1.55843 * 110.62790 * 279.67518 * 11 10 8 19 19 H 1.08992 * 115.56395 * 81.78061 * 18 11 10 20 20 N 1.50235 * 101.04864 * 208.41176 * 18 11 10 21 21 C 1.36936 * 130.84177 * 233.94554 * 20 18 11 22 22 H 1.07999 * 120.00710 * 165.01749 * 21 20 18 23 23 C 1.38820 * 119.99586 * 345.02033 * 21 20 18 24 24 N 1.31617 * 119.99977 * 155.74349 * 23 21 20 25 25 Si 1.86802 * 119.99922 * 335.73471 * 23 21 20 26 26 H 1.48504 * 109.46743 * 88.31854 * 25 23 21 27 27 H 1.48496 * 109.47348 * 208.31621 * 25 23 21 28 28 H 1.48504 * 109.47231 * 328.32022 * 25 23 21 29 29 C 1.39101 * 120.60382 * 0.27619 * 7 6 5 30 30 H 1.09001 * 109.46634 * 60.00225 * 1 2 3 31 31 H 1.09000 * 109.47285 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47211 * 300.00391 * 1 2 3 33 33 H 1.07992 * 120.35827 * 359.97438 * 4 3 2 34 34 H 1.07998 * 119.51452 * 179.97438 * 5 4 3 35 35 H 0.97001 * 120.00034 * 0.02562 * 10 8 7 36 36 H 1.08998 * 110.62821 * 237.04560 * 13 11 10 37 37 H 1.09001 * 110.62299 * 359.91304 * 13 11 10 38 38 H 1.08998 * 110.63066 * 190.31884 * 16 14 13 39 39 H 1.09004 * 110.62752 * 313.17814 * 16 14 13 40 40 H 1.08996 * 110.35591 * 241.22431 * 17 16 14 41 41 H 1.09001 * 110.74983 * 118.29846 * 17 16 14 42 42 H 0.97003 * 119.99719 * 180.02562 * 24 23 21 43 43 H 1.07998 * 120.50579 * 179.72614 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2095 0.0000 4 6 1.3037 2.3877 -0.0005 5 6 1.9642 3.6029 0.0000 6 7 3.2792 3.6592 0.0005 7 6 4.0261 2.5611 0.0011 8 6 5.5033 2.6782 0.0011 9 8 6.1921 1.6772 0.0011 10 7 6.0829 3.8949 0.0010 11 6 7.5434 4.0107 0.0016 12 1 7.9846 3.2915 -0.6885 13 6 7.9800 5.4518 -0.3595 14 6 8.7504 5.9257 0.9096 15 1 9.4432 6.7533 0.7575 16 6 7.6498 6.1596 1.9879 17 6 7.2150 4.6996 2.3548 18 6 8.1095 3.8100 1.4397 19 1 8.2257 2.7744 1.7591 20 7 9.3634 4.6347 1.3731 21 6 10.6646 4.3100 1.6501 22 1 11.4646 4.9553 1.3185 23 6 10.9553 3.1512 2.3571 24 7 12.1337 2.5794 2.2274 25 14 9.6742 2.4037 3.4926 26 1 8.8179 1.4656 2.7232 27 1 10.3536 1.6679 4.5890 28 1 8.8326 3.4834 4.0683 29 6 3.4345 1.3022 -0.0047 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 0.2243 2.3532 -0.0014 34 1 1.3926 4.5192 -0.0008 35 1 5.5331 4.6941 0.0014 36 1 8.6377 5.4474 -1.2286 37 1 7.1097 6.0825 -0.5411 38 1 8.0665 6.6662 2.8584 39 1 6.8206 6.7322 1.5723 40 1 6.1604 4.5489 2.1244 41 1 7.4133 4.4903 3.4060 42 1 12.3366 1.7695 2.7211 43 1 4.0435 0.4103 -0.0087 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001095854878.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:10 Heat of formation + Delta-G solvation = 29.704903 kcal Electronic energy + Delta-G solvation = -26885.163254 eV Core-core repulsion = 23125.991292 eV Total energy + Delta-G solvation = -3759.171962 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.09775 -40.05858 -38.87035 -37.91136 -34.04363 -32.41291 -31.89168 -31.68072 -29.58309 -29.35192 -28.28781 -27.89751 -24.64372 -23.73041 -23.66159 -21.67118 -20.88516 -19.75321 -19.09167 -18.64748 -17.59621 -16.93848 -16.51069 -16.32358 -16.02919 -15.76196 -15.65755 -14.95602 -14.86002 -14.24655 -14.16486 -13.92368 -13.50785 -13.46530 -12.94186 -12.78789 -12.32411 -12.21141 -12.03761 -11.86326 -11.74336 -11.33849 -11.15165 -10.90913 -10.83207 -10.41689 -10.28470 -10.16413 -9.73138 -9.70462 -9.55687 -9.52579 -9.26559 -9.25299 -8.84556 -8.43951 -7.13935 -5.89186 -3.14273 0.41062 0.97392 2.58721 2.76089 3.32047 3.45647 3.56056 3.57900 3.73192 4.02008 4.23183 4.45802 4.62022 4.63463 4.64399 4.77169 4.80227 4.98001 5.03563 5.22200 5.25379 5.32229 5.46179 5.50271 5.64618 5.68136 5.68959 5.86359 5.91315 6.02495 6.04898 6.08255 6.30656 6.40213 6.49713 6.52450 6.69021 6.75810 6.77862 6.95312 6.98850 7.44130 7.48988 7.82263 8.36346 8.40370 8.77808 9.71279 10.32251 11.26865 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.019376 B = 0.003692 C = 0.003348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.717537 B = 7582.270802 C = 8360.898158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.307 6.307 3 C 0.163 3.837 4 C -0.248 4.248 5 C 0.136 3.864 6 N -0.482 5.482 7 C 0.123 3.877 8 C 0.562 3.438 9 O -0.523 6.523 10 N -0.691 5.691 11 C 0.128 3.872 12 H 0.089 0.911 13 C -0.132 4.132 14 C 0.138 3.862 15 H 0.096 0.904 16 C -0.132 4.132 17 C -0.142 4.142 18 C 0.114 3.886 19 H 0.103 0.897 20 N -0.600 5.600 21 C -0.231 4.231 22 H 0.096 0.904 23 C 0.024 3.976 24 N -0.907 5.907 25 Si 0.864 3.136 26 H -0.282 1.282 27 H -0.303 1.303 28 H -0.263 1.263 29 C -0.145 4.145 30 H 0.059 0.941 31 H 0.105 0.895 32 H 0.059 0.941 33 H 0.143 0.857 34 H 0.165 0.835 35 H 0.406 0.594 36 H 0.072 0.928 37 H 0.065 0.935 38 H 0.058 0.942 39 H 0.057 0.943 40 H 0.058 0.942 41 H 0.062 0.938 42 H 0.263 0.737 43 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.661 2.660 -5.764 27.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.218 6.218 3 C 0.109 3.891 4 C -0.269 4.269 5 C -0.023 4.023 6 N -0.197 5.197 7 C -0.014 4.014 8 C 0.345 3.655 9 O -0.399 6.399 10 N -0.342 5.342 11 C 0.023 3.977 12 H 0.107 0.893 13 C -0.172 4.172 14 C 0.031 3.969 15 H 0.114 0.886 16 C -0.172 4.172 17 C -0.181 4.181 18 C 0.007 3.993 19 H 0.120 0.880 20 N -0.322 5.322 21 C -0.357 4.357 22 H 0.113 0.887 23 C -0.175 4.175 24 N -0.550 5.550 25 Si 0.695 3.305 26 H -0.210 1.210 27 H -0.232 1.232 28 H -0.188 1.188 29 C -0.167 4.167 30 H 0.078 0.922 31 H 0.123 0.877 32 H 0.078 0.922 33 H 0.160 0.840 34 H 0.182 0.818 35 H 0.243 0.757 36 H 0.091 0.909 37 H 0.084 0.916 38 H 0.077 0.923 39 H 0.075 0.925 40 H 0.077 0.923 41 H 0.080 0.920 42 H 0.073 0.927 43 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -25.255 2.346 -5.670 25.989 hybrid contribution -1.813 -0.930 0.806 2.191 sum -27.067 1.416 -4.864 27.537 Atomic orbital electron populations 1.23171 0.77586 1.04592 1.01677 1.86114 1.21995 1.25989 1.87734 1.19211 0.92112 0.84847 0.92931 1.22382 1.01722 0.93225 1.09592 1.22574 0.89709 0.97146 0.92918 1.67634 1.07265 1.31259 1.13559 1.21127 0.94664 0.88542 0.97098 1.17775 0.85414 0.84387 0.77905 1.90846 1.63094 1.36513 1.49424 1.46033 1.08188 1.07685 1.72295 1.22596 0.77050 0.98140 0.99942 0.89300 1.23155 0.99715 0.94453 0.99882 1.22951 0.92233 0.90069 0.91637 0.88583 1.23279 0.98267 0.95915 0.99711 1.23470 0.98503 0.95875 1.00238 1.23493 0.86711 0.96303 0.92826 0.87999 1.46768 1.02388 1.05181 1.77899 1.18583 0.79722 1.07534 1.29875 0.88661 1.24845 0.95842 0.97024 0.99759 1.69859 1.22542 1.19713 1.42887 0.87188 0.81719 0.79399 0.82195 1.20958 1.23159 1.18801 1.21448 0.91984 1.00006 1.03246 0.92236 0.87687 0.92211 0.83969 0.81772 0.75737 0.90916 0.91649 0.92294 0.92463 0.92341 0.91980 0.92744 0.82582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.84 101.05 0.99 1.11 16 2 O -0.31 -2.98 10.51 -18.96 -0.20 -3.18 16 3 C 0.16 1.73 6.73 -38.85 -0.26 1.47 16 4 C -0.25 -2.01 9.12 -39.19 -0.36 -2.37 16 5 C 0.14 1.19 11.17 -17.62 -0.20 1.00 16 6 N -0.48 -5.80 9.54 -9.87 -0.09 -5.90 16 7 C 0.12 1.75 6.75 -83.04 -0.56 1.19 16 8 C 0.56 9.74 7.75 -12.18 -0.09 9.65 16 9 O -0.52 -11.09 16.15 5.36 0.09 -11.00 16 10 N -0.69 -11.06 3.56 -52.23 -0.19 -11.25 16 11 C 0.13 2.42 3.00 -65.44 -0.20 2.23 16 12 H 0.09 1.87 7.87 -51.93 -0.41 1.47 16 13 C -0.13 -2.14 6.21 -24.24 -0.15 -2.29 16 14 C 0.14 2.58 5.43 -62.80 -0.34 2.24 16 15 H 0.10 1.69 8.14 -51.93 -0.42 1.26 16 16 C -0.13 -2.24 6.58 -23.23 -0.15 -2.39 16 17 C -0.14 -2.75 6.17 -23.22 -0.14 -2.89 16 18 C 0.11 2.58 3.42 -62.80 -0.21 2.36 16 19 H 0.10 2.66 4.12 -51.93 -0.21 2.44 16 20 N -0.60 -14.48 2.77 -145.82 -0.40 -14.88 16 21 C -0.23 -6.60 10.90 -15.06 -0.16 -6.77 16 22 H 0.10 2.84 8.06 -52.49 -0.42 2.42 16 23 C 0.02 0.72 5.48 -17.43 -0.10 0.62 16 24 N -0.91 -28.73 13.97 55.49 0.78 -27.96 16 25 Si 0.86 23.36 24.85 -169.99 -4.22 19.14 16 26 H -0.28 -7.75 6.30 56.52 0.36 -7.40 16 27 H -0.30 -8.30 7.11 56.52 0.40 -7.90 16 28 H -0.26 -6.79 5.19 56.52 0.29 -6.50 16 29 C -0.15 -1.93 9.60 -38.89 -0.37 -2.30 16 30 H 0.06 0.21 7.71 -51.93 -0.40 -0.19 16 31 H 0.10 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.23 7.71 -51.93 -0.40 -0.17 16 33 H 0.14 0.68 6.45 -52.49 -0.34 0.34 16 34 H 0.17 0.86 8.06 -52.49 -0.42 0.44 16 35 H 0.41 5.49 7.47 -40.82 -0.30 5.19 16 36 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 37 H 0.07 0.85 7.29 -51.93 -0.38 0.47 16 38 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.06 0.79 7.81 -51.93 -0.41 0.38 16 40 H 0.06 1.01 6.60 -51.93 -0.34 0.67 16 41 H 0.06 1.32 6.24 -51.93 -0.32 0.99 16 42 H 0.26 7.97 8.31 -40.82 -0.34 7.63 16 43 H 0.16 2.18 7.64 -52.49 -0.40 1.78 16 LS Contribution 341.96 15.07 5.15 5.15 Total: -1.00 -35.29 341.96 -7.14 -42.44 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -5.74 Total: 4.57 kcal Atomic # 6 Polarization: 5.17 SS G_CDS: -2.31 Total: 2.86 kcal Atomic # 7 Polarization: -60.07 SS G_CDS: 0.09 Total: -59.98 kcal Atomic # 8 Polarization: -14.07 SS G_CDS: -0.11 Total: -14.18 kcal Atomic # 14 Polarization: 23.36 SS G_CDS: -4.22 Total: 19.14 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -35.29 -7.14 -42.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095854878.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.142 kcal (2) G-P(sol) polarization free energy of solvation -35.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.437 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds