Wall clock time and date at job start Tue Mar 31 2020 11:43:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35750 * 116.99917 * 2 1 4 4 C 1.39211 * 120.81220 * 359.97438 * 3 2 1 5 5 C 1.38315 * 119.28449 * 179.97438 * 4 3 2 6 6 N 1.31616 * 120.97610 * 0.02562 * 5 4 3 7 7 C 1.32805 * 121.77599 * 359.97412 * 6 5 4 8 8 C 1.48176 * 119.69322 * 179.97438 * 7 6 5 9 9 O 1.21511 * 120.00164 * 180.02562 * 8 7 6 10 10 N 1.34777 * 120.00479 * 0.02562 * 8 7 6 11 11 C 1.46502 * 120.00452 * 179.97438 * 10 8 7 12 12 H 1.09005 * 110.55598 * 42.57006 * 11 10 8 13 13 C 1.54852 * 110.76491 * 165.56378 * 11 10 8 14 14 C 1.55842 * 103.44298 * 118.55522 * 13 11 10 15 15 H 1.08998 * 115.55800 * 158.81093 * 14 13 11 16 16 C 1.55841 * 105.06851 * 287.42509 * 14 13 11 17 17 C 1.56687 * 102.59991 * 72.29985 * 16 14 13 18 18 C 1.55843 * 110.62790 * 279.67518 * 11 10 8 19 19 H 1.08992 * 115.56395 * 81.78061 * 18 11 10 20 20 N 1.50235 * 101.04864 * 208.41176 * 18 11 10 21 21 C 1.36936 * 130.84177 * 233.94554 * 20 18 11 22 22 H 1.07999 * 120.00710 * 165.01749 * 21 20 18 23 23 C 1.38820 * 119.99586 * 345.02033 * 21 20 18 24 24 N 1.31617 * 119.99977 * 155.74349 * 23 21 20 25 25 Si 1.86802 * 119.99922 * 335.73471 * 23 21 20 26 26 H 1.48504 * 109.46743 * 88.31854 * 25 23 21 27 27 H 1.48496 * 109.47348 * 208.31621 * 25 23 21 28 28 H 1.48504 * 109.47231 * 328.32022 * 25 23 21 29 29 C 1.39101 * 120.60382 * 0.27619 * 7 6 5 30 30 H 1.09001 * 109.46634 * 60.00225 * 1 2 3 31 31 H 1.09000 * 109.47285 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47211 * 300.00391 * 1 2 3 33 33 H 1.07992 * 120.35827 * 359.97438 * 4 3 2 34 34 H 1.07998 * 119.51452 * 179.97438 * 5 4 3 35 35 H 0.97001 * 120.00034 * 0.02562 * 10 8 7 36 36 H 1.08998 * 110.62821 * 237.04560 * 13 11 10 37 37 H 1.09001 * 110.62299 * 359.91304 * 13 11 10 38 38 H 1.08998 * 110.63066 * 190.31884 * 16 14 13 39 39 H 1.09004 * 110.62752 * 313.17814 * 16 14 13 40 40 H 1.08996 * 110.35591 * 241.22431 * 17 16 14 41 41 H 1.09001 * 110.74983 * 118.29846 * 17 16 14 42 42 H 0.97003 * 119.99719 * 180.02562 * 24 23 21 43 43 H 1.07998 * 120.50579 * 179.72614 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2095 0.0000 4 6 1.3037 2.3877 -0.0005 5 6 1.9642 3.6029 0.0000 6 7 3.2792 3.6592 0.0005 7 6 4.0261 2.5611 0.0011 8 6 5.5033 2.6782 0.0011 9 8 6.1921 1.6772 0.0011 10 7 6.0829 3.8949 0.0010 11 6 7.5434 4.0107 0.0016 12 1 7.9846 3.2915 -0.6885 13 6 7.9800 5.4518 -0.3595 14 6 8.7504 5.9257 0.9096 15 1 9.4432 6.7533 0.7575 16 6 7.6498 6.1596 1.9879 17 6 7.2150 4.6996 2.3548 18 6 8.1095 3.8100 1.4397 19 1 8.2257 2.7744 1.7591 20 7 9.3634 4.6347 1.3731 21 6 10.6646 4.3100 1.6501 22 1 11.4646 4.9553 1.3185 23 6 10.9553 3.1512 2.3571 24 7 12.1337 2.5794 2.2274 25 14 9.6742 2.4037 3.4926 26 1 8.8179 1.4656 2.7232 27 1 10.3536 1.6679 4.5890 28 1 8.8326 3.4834 4.0683 29 6 3.4345 1.3022 -0.0047 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 0.2243 2.3532 -0.0014 34 1 1.3926 4.5192 -0.0008 35 1 5.5331 4.6941 0.0014 36 1 8.6377 5.4474 -1.2286 37 1 7.1097 6.0825 -0.5411 38 1 8.0665 6.6662 2.8584 39 1 6.8206 6.7322 1.5723 40 1 6.1604 4.5489 2.1244 41 1 7.4133 4.4903 3.4060 42 1 12.3366 1.7695 2.7211 43 1 4.0435 0.4103 -0.0087 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001095854878.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:09 Heat of formation + Delta-G solvation = 2.872373 kcal Electronic energy + Delta-G solvation = -26886.326800 eV Core-core repulsion = 23125.991292 eV Total energy + Delta-G solvation = -3760.335508 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.06746 -41.36952 -40.01940 -38.96239 -35.60324 -34.46463 -32.72635 -32.57129 -31.41519 -30.89228 -29.67365 -28.51510 -26.17775 -25.18822 -24.43234 -23.01744 -22.28370 -21.36126 -20.54088 -19.74287 -18.90392 -18.43458 -17.93938 -17.15250 -17.08968 -16.92736 -16.70925 -16.41545 -15.78618 -15.65342 -15.50469 -15.24936 -14.92349 -14.78316 -14.42176 -14.07710 -13.79008 -13.48116 -13.36453 -13.25988 -12.84548 -12.68971 -12.54788 -12.52434 -12.33391 -12.22943 -11.82179 -11.53824 -11.48960 -11.31210 -11.02277 -10.86519 -10.74187 -10.42711 -10.06626 -10.00106 -9.17040 -8.20746 -5.37977 -0.49845 0.18997 1.24763 1.29202 1.37658 1.62931 1.77894 2.26084 2.39303 2.76790 2.90793 3.10413 3.23628 3.57596 3.73781 3.79055 3.88321 3.94132 3.97390 4.12488 4.22043 4.31478 4.34890 4.37512 4.46704 4.47572 4.53865 4.67288 4.69297 4.74142 4.77822 4.89526 4.91936 5.01018 5.11722 5.19948 5.31098 5.35744 5.40707 5.57087 5.62954 6.09411 6.13231 6.38702 6.60473 6.77917 7.13753 7.47242 8.23242 8.99684 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.019376 B = 0.003692 C = 0.003348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.717537 B = 7582.270802 C = 8360.898158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.331 6.331 3 C 0.158 3.842 4 C -0.224 4.224 5 C 0.139 3.861 6 N -0.488 5.488 7 C 0.104 3.896 8 C 0.558 3.442 9 O -0.577 6.577 10 N -0.674 5.674 11 C 0.138 3.862 12 H 0.054 0.946 13 C -0.115 4.115 14 C 0.132 3.868 15 H 0.111 0.889 16 C -0.117 4.117 17 C -0.135 4.135 18 C 0.096 3.904 19 H 0.057 0.943 20 N -0.627 5.627 21 C -0.203 4.203 22 H 0.076 0.924 23 C -0.038 4.038 24 N -0.955 5.955 25 Si 0.919 3.081 26 H -0.302 1.302 27 H -0.311 1.311 28 H -0.244 1.244 29 C -0.169 4.169 30 H 0.078 0.922 31 H 0.119 0.881 32 H 0.076 0.924 33 H 0.186 0.814 34 H 0.211 0.789 35 H 0.423 0.577 36 H 0.074 0.926 37 H 0.115 0.885 38 H 0.057 0.943 39 H 0.108 0.892 40 H 0.082 0.918 41 H 0.039 0.961 42 H 0.258 0.742 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.067 5.998 -6.379 33.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.242 6.242 3 C 0.104 3.896 4 C -0.245 4.245 5 C -0.020 4.020 6 N -0.204 5.204 7 C -0.032 4.032 8 C 0.343 3.657 9 O -0.456 6.456 10 N -0.326 5.326 11 C 0.032 3.968 12 H 0.073 0.927 13 C -0.155 4.155 14 C 0.027 3.973 15 H 0.128 0.872 16 C -0.156 4.156 17 C -0.174 4.174 18 C -0.012 4.012 19 H 0.074 0.926 20 N -0.350 5.350 21 C -0.332 4.332 22 H 0.093 0.907 23 C -0.232 4.232 24 N -0.603 5.603 25 Si 0.751 3.249 26 H -0.231 1.231 27 H -0.240 1.240 28 H -0.168 1.168 29 C -0.191 4.191 30 H 0.097 0.903 31 H 0.137 0.863 32 H 0.095 0.905 33 H 0.203 0.797 34 H 0.228 0.772 35 H 0.263 0.737 36 H 0.093 0.907 37 H 0.133 0.867 38 H 0.076 0.924 39 H 0.126 0.874 40 H 0.101 0.899 41 H 0.058 0.942 42 H 0.067 0.933 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -30.760 5.759 -6.290 31.920 hybrid contribution -0.348 -1.964 0.877 2.179 sum -31.108 3.795 -5.414 31.803 Atomic orbital electron populations 1.23552 0.74935 1.06280 1.03348 1.86100 1.24734 1.25872 1.87493 1.19254 0.91221 0.86346 0.92733 1.22835 1.03665 0.91650 1.06309 1.23381 0.88598 0.99157 0.90844 1.67603 1.08859 1.29872 1.14053 1.20526 0.92812 0.89676 1.00168 1.18356 0.87009 0.83832 0.76456 1.90818 1.64821 1.38274 1.51686 1.45779 1.06920 1.08146 1.71789 1.22204 0.78586 0.99403 0.96648 0.92744 1.23102 1.01207 0.92618 0.98524 1.23339 0.92847 0.88109 0.92978 0.87155 1.23254 0.98991 0.94287 0.99072 1.23394 0.99084 0.96988 0.97977 1.23521 0.87138 0.94549 0.95951 0.92562 1.46930 1.01433 1.08558 1.78125 1.18615 0.81760 1.05964 1.26834 0.90664 1.25356 0.97224 0.98440 1.02184 1.69960 1.24537 1.20836 1.45007 0.86303 0.79589 0.78720 0.80270 1.23139 1.24032 1.16804 1.21362 0.93685 0.99010 1.05060 0.90340 0.86321 0.90524 0.79693 0.77222 0.73673 0.90734 0.86674 0.92438 0.87351 0.89933 0.94239 0.93270 0.85193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.08 9.84 113.37 1.12 1.19 16 2 O -0.33 -5.86 10.51 -90.75 -0.95 -6.81 16 3 C 0.16 3.08 6.73 22.74 0.15 3.23 16 4 C -0.22 -2.58 9.12 22.52 0.21 -2.37 16 5 C 0.14 1.73 11.17 84.74 0.95 2.68 16 6 N -0.49 -10.12 9.54 -185.14 -1.77 -11.89 16 7 C 0.10 2.91 6.75 41.85 0.28 3.19 16 8 C 0.56 19.70 7.75 86.88 0.67 20.37 16 9 O -0.58 -26.24 16.15 -3.75 -0.06 -26.30 16 10 N -0.67 -20.60 3.56 -437.45 -1.56 -22.16 16 11 C 0.14 5.15 3.00 46.61 0.14 5.29 16 12 H 0.05 2.40 7.87 -2.38 -0.02 2.38 16 13 C -0.12 -3.34 6.21 32.21 0.20 -3.14 16 14 C 0.13 4.54 5.43 46.23 0.25 4.79 16 15 H 0.11 3.49 8.14 -2.39 -0.02 3.47 16 16 C -0.12 -3.45 6.58 32.87 0.22 -3.23 16 17 C -0.14 -4.97 6.17 32.87 0.20 -4.77 16 18 C 0.10 4.34 3.42 46.23 0.16 4.50 16 19 H 0.06 3.09 4.12 -2.39 -0.01 3.08 16 20 N -0.63 -30.28 2.77 -615.26 -1.70 -31.98 16 21 C -0.20 -11.98 10.90 84.04 0.92 -11.06 16 22 H 0.08 4.64 8.06 -2.91 -0.02 4.62 16 23 C -0.04 -2.39 5.48 84.86 0.46 -1.92 16 24 N -0.96 -63.88 13.97 21.65 0.30 -63.57 16 25 Si 0.92 51.46 24.85 68.60 1.70 53.17 16 26 H -0.30 -17.70 6.30 99.48 0.63 -17.08 16 27 H -0.31 -17.52 7.11 99.48 0.71 -16.82 16 28 H -0.24 -12.64 5.19 99.48 0.52 -12.13 16 29 C -0.17 -4.58 9.60 22.72 0.22 -4.36 16 30 H 0.08 0.21 7.71 -2.39 -0.02 0.20 16 31 H 0.12 0.42 8.14 -2.39 -0.02 0.40 16 32 H 0.08 0.24 7.71 -2.39 -0.02 0.22 16 33 H 0.19 0.51 6.45 -2.91 -0.02 0.49 16 34 H 0.21 0.68 8.06 -2.91 -0.02 0.65 16 35 H 0.42 9.82 7.47 -92.71 -0.69 9.13 16 36 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 37 H 0.12 2.25 7.29 -2.39 -0.02 2.23 16 38 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.11 2.18 7.81 -2.39 -0.02 2.16 16 40 H 0.08 2.60 6.60 -2.39 -0.02 2.59 16 41 H 0.04 1.62 6.24 -2.39 -0.01 1.60 16 42 H 0.26 16.64 8.31 -92.71 -0.77 15.87 16 43 H 0.13 4.06 7.64 -2.91 -0.02 4.04 16 Total: -1.00 -86.33 341.96 2.20 -84.14 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: 0.09 Total: 11.01 kcal Atomic # 6 Polarization: 8.26 SS G_CDS: 6.14 Total: 14.40 kcal Atomic # 7 Polarization: -124.88 SS G_CDS: -4.73 Total: -129.60 kcal Atomic # 8 Polarization: -32.10 SS G_CDS: -1.01 Total: -33.11 kcal Atomic # 14 Polarization: 51.46 SS G_CDS: 1.70 Total: 53.17 kcal Total: -86.33 2.20 -84.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095854878.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.011 kcal (2) G-P(sol) polarization free energy of solvation -86.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.139 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds