Wall clock time and date at job start Tue Mar 31 2020 11:40:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35423 * 117.00243 * 2 1 4 4 N 1.32240 * 119.80100 * 0.30927 * 3 2 1 5 5 C 1.31880 * 121.80126 * 180.31808 * 4 3 2 6 6 C 1.38351 * 121.18577 * 359.65548 * 5 4 3 7 7 C 1.38340 * 119.46101 * 0.02562 * 6 5 4 8 8 C 1.39994 * 118.34553 * 359.97438 * 7 6 5 9 9 C 1.47517 * 120.59610 * 180.02562 * 8 7 6 10 10 O 1.21592 * 120.00307 * 180.02562 * 9 8 7 11 11 N 1.34778 * 119.99958 * 0.02562 * 9 8 7 12 12 C 1.46499 * 119.99921 * 179.97438 * 11 9 8 13 13 H 1.09001 * 110.68413 * 37.01000 * 12 11 9 14 14 C 1.54850 * 110.62873 * 159.99823 * 12 11 9 15 15 C 1.55847 * 103.44660 * 118.48627 * 14 12 11 16 16 H 1.09001 * 115.55794 * 158.81469 * 15 14 12 17 17 C 1.55842 * 105.06702 * 288.18113 * 15 14 12 18 18 C 1.55867 * 103.53327 * 72.42567 * 17 15 14 19 19 C 1.55848 * 110.62795 * 274.02519 * 12 11 9 20 20 H 1.08999 * 115.56400 * 82.69735 * 19 12 11 21 21 N 1.50241 * 101.04854 * 32.94457 * 15 14 12 22 22 C 1.36931 * 130.84272 * 126.01479 * 21 15 14 23 23 H 1.08003 * 120.00334 * 180.02562 * 22 21 15 24 24 C 1.38817 * 119.99756 * 0.02562 * 22 21 15 25 25 N 1.31617 * 119.99987 * 0.02562 * 24 22 21 26 26 Si 1.86804 * 119.99748 * 180.02562 * 24 22 21 27 27 H 1.48499 * 109.47278 * 0.02562 * 26 24 22 28 28 H 1.48500 * 109.47136 * 120.00344 * 26 24 22 29 29 H 1.48503 * 109.46855 * 240.00342 * 26 24 22 30 30 H 1.09001 * 109.46814 * 300.00309 * 1 2 3 31 31 H 1.08998 * 109.47151 * 60.00027 * 1 2 3 32 32 H 1.08995 * 109.47213 * 180.02562 * 1 2 3 33 33 H 1.08001 * 119.40780 * 179.68096 * 5 4 3 34 34 H 1.08004 * 120.27296 * 180.02562 * 6 5 4 35 35 H 1.07998 * 120.82999 * 179.97438 * 7 6 5 36 36 H 0.96993 * 119.99991 * 0.02562 * 11 9 8 37 37 H 1.09001 * 110.62667 * 0.02562 * 14 12 11 38 38 H 1.08996 * 110.63188 * 236.97735 * 14 12 11 39 39 H 1.09003 * 110.62706 * 190.31386 * 17 15 14 40 40 H 1.09004 * 110.62337 * 313.16999 * 17 15 14 41 41 H 1.09004 * 110.10177 * 241.14317 * 18 17 15 42 42 H 1.08992 * 111.60510 * 117.80573 * 18 17 15 43 43 H 0.97002 * 119.99939 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0438 1.2066 0.0000 4 7 1.3198 2.3132 0.0062 5 6 1.8772 3.5084 0.0002 6 6 3.2526 3.6574 -0.0058 7 6 4.0588 2.5332 -0.0060 8 6 3.4450 1.2751 0.0004 9 6 4.2569 0.0435 0.0010 10 8 3.7125 -1.0437 0.0062 11 7 5.6023 0.1233 -0.0041 12 6 6.4087 -1.0998 -0.0029 13 1 5.9385 -1.8715 -0.6125 14 6 7.8441 -0.8074 -0.5048 15 6 8.7379 -1.1803 0.7162 16 1 9.7815 -1.3956 0.4867 17 6 8.4836 -0.0544 1.7633 18 6 7.0449 -0.3562 2.2813 19 6 6.6307 -1.6097 1.4529 20 1 5.8183 -2.2032 1.8724 21 7 7.9514 -2.3123 1.3138 22 6 8.3234 -3.5908 1.6331 23 1 7.6031 -4.2718 2.0618 24 6 9.6266 -4.0117 1.4056 25 7 10.5045 -3.1817 0.8835 26 14 10.1340 -5.7561 1.8404 27 1 8.9703 -6.4832 2.4082 28 1 10.6045 -6.4543 0.6172 29 1 11.2305 -5.7177 2.8412 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.2486 4.3866 0.0004 34 1 3.6934 4.6434 -0.0102 35 1 5.1350 2.6239 -0.0110 36 1 6.0367 0.9905 -0.0078 37 1 7.9562 0.2478 -0.7542 38 1 8.0859 -1.4340 -1.3632 39 1 9.1987 -0.1237 2.5831 40 1 8.5358 0.9271 1.2920 41 1 6.3845 0.4832 2.0636 42 1 7.0415 -0.5824 3.3475 43 1 11.4152 -3.4757 0.7249 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001095959536.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:27 Heat of formation + Delta-G solvation = 22.958220 kcal Electronic energy + Delta-G solvation = -26991.920888 eV Core-core repulsion = 23232.456367 eV Total energy + Delta-G solvation = -3759.464520 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.03221 -39.70329 -38.09504 -37.94859 -34.00579 -32.87468 -32.14267 -31.03014 -29.23503 -29.00861 -27.72253 -27.19711 -24.84097 -24.00032 -23.08953 -21.47582 -20.73203 -19.49803 -18.83243 -18.41897 -17.55946 -17.21392 -16.76735 -16.18997 -15.43643 -15.26838 -14.91765 -14.75804 -14.40068 -14.19203 -14.11285 -13.82894 -13.37040 -13.22348 -12.78262 -12.30379 -12.22086 -11.88232 -11.75508 -11.47782 -11.37438 -11.01452 -10.90344 -10.87471 -10.81279 -10.20857 -10.19398 -10.17766 -10.04913 -9.82592 -9.53764 -9.35346 -9.21655 -8.92474 -8.75809 -8.43798 -6.89492 -5.71438 -3.08955 0.51621 1.00642 2.92968 2.99117 3.37020 3.41504 3.47108 3.49231 3.75258 4.04664 4.47022 4.48173 4.62917 4.79242 4.94684 5.15556 5.18519 5.22746 5.23456 5.40441 5.48709 5.56705 5.61194 5.78228 5.82778 5.87344 5.96387 6.06826 6.10090 6.12602 6.31726 6.34632 6.54882 6.61906 6.70285 6.83233 6.98009 7.01581 7.08179 7.28497 7.51399 7.54824 7.76281 7.87345 8.18303 8.54685 9.12308 9.74712 10.55155 11.38404 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.024026 B = 0.003312 C = 0.003036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.109248 B = 8451.476154 C = 9220.137893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.268 6.268 3 C 0.369 3.631 4 N -0.547 5.547 5 C 0.160 3.840 6 C -0.221 4.221 7 C -0.010 4.010 8 C -0.202 4.202 9 C 0.556 3.444 10 O -0.517 6.517 11 N -0.709 5.709 12 C 0.131 3.869 13 H 0.083 0.917 14 C -0.141 4.141 15 C 0.154 3.846 16 H 0.155 0.845 17 C -0.136 4.136 18 C -0.129 4.129 19 C 0.128 3.872 20 H 0.085 0.915 21 N -0.591 5.591 22 C -0.207 4.207 23 H 0.080 0.920 24 C -0.013 4.013 25 N -0.924 5.924 26 Si 0.916 3.084 27 H -0.280 1.280 28 H -0.291 1.291 29 H -0.291 1.291 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.098 0.902 33 H 0.163 0.837 34 H 0.143 0.857 35 H 0.145 0.855 36 H 0.391 0.609 37 H 0.054 0.946 38 H 0.066 0.934 39 H 0.054 0.946 40 H 0.045 0.955 41 H 0.049 0.951 42 H 0.052 0.948 43 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.133 16.545 -2.898 21.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.172 6.172 3 C 0.189 3.811 4 N -0.272 5.272 5 C 0.003 3.997 6 C -0.242 4.242 7 C -0.036 4.036 8 C -0.208 4.208 9 C 0.342 3.658 10 O -0.393 6.393 11 N -0.361 5.361 12 C 0.025 3.975 13 H 0.102 0.898 14 C -0.181 4.181 15 C 0.047 3.953 16 H 0.172 0.828 17 C -0.176 4.176 18 C -0.169 4.169 19 C 0.019 3.981 20 H 0.103 0.897 21 N -0.311 5.311 22 C -0.336 4.336 23 H 0.098 0.902 24 C -0.208 4.208 25 N -0.573 5.573 26 Si 0.747 3.253 27 H -0.205 1.205 28 H -0.218 1.218 29 H -0.218 1.218 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.116 0.884 33 H 0.180 0.820 34 H 0.161 0.839 35 H 0.162 0.838 36 H 0.226 0.774 37 H 0.072 0.928 38 H 0.085 0.915 39 H 0.072 0.928 40 H 0.064 0.936 41 H 0.067 0.933 42 H 0.071 0.929 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -15.114 15.045 -2.859 21.516 hybrid contribution 1.040 -0.043 0.241 1.068 sum -14.074 15.002 -2.618 20.736 Atomic orbital electron populations 1.22946 0.77693 1.03314 1.02090 1.86569 1.22166 1.22919 1.85513 1.19897 0.88240 0.85079 0.87867 1.67467 1.40438 0.98702 1.20576 1.22618 0.93074 0.93717 0.90257 1.21915 0.94747 0.99881 1.07610 1.21686 1.00754 0.90578 0.90602 1.20211 0.91715 0.95398 1.13521 1.17740 0.82342 0.88067 0.77682 1.90836 1.71592 1.28246 1.48605 1.46115 1.05356 1.10076 1.74541 1.22628 0.90576 0.84878 0.99425 0.89845 1.23308 0.94610 0.99102 1.01068 1.23772 0.99177 0.84302 0.88060 0.82819 1.23220 0.96041 0.98012 1.00298 1.23053 0.96719 0.97884 0.99244 1.23195 0.90037 0.92016 0.92820 0.89739 1.46499 1.04531 1.08914 1.71161 1.19124 0.94740 0.85999 1.33689 0.90244 1.24691 0.95895 0.98372 1.01867 1.69440 1.03829 1.33871 1.50125 0.85957 0.78157 0.83650 0.77525 1.20537 1.21796 1.21844 0.92331 0.92382 0.88361 0.82022 0.83934 0.83761 0.77397 0.92791 0.91533 0.92752 0.93624 0.93287 0.92909 0.93651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.38 101.05 1.05 1.42 16 2 O -0.27 -4.07 8.58 -39.73 -0.34 -4.41 16 3 C 0.37 5.18 7.51 -16.61 -0.12 5.06 16 4 N -0.55 -6.40 9.21 -12.98 -0.12 -6.52 16 5 C 0.16 1.35 11.17 -17.49 -0.20 1.15 16 6 C -0.22 -1.67 10.09 -39.50 -0.40 -2.07 16 7 C -0.01 -0.10 9.64 -38.89 -0.37 -0.47 16 8 C -0.20 -2.74 5.90 -104.69 -0.62 -3.36 16 9 C 0.56 9.25 7.77 -12.48 -0.10 9.15 16 10 O -0.52 -10.70 14.92 -16.49 -0.25 -10.95 16 11 N -0.71 -10.77 3.62 -52.44 -0.19 -10.96 16 12 C 0.13 2.47 3.08 -65.44 -0.20 2.27 16 13 H 0.08 1.78 7.70 -51.93 -0.40 1.38 16 14 C -0.14 -2.66 6.20 -24.24 -0.15 -2.81 16 15 C 0.15 3.43 4.72 -62.80 -0.30 3.14 16 16 H 0.16 3.93 5.52 -51.93 -0.29 3.64 16 17 C -0.14 -2.60 6.46 -23.68 -0.15 -2.75 16 18 C -0.13 -2.41 6.42 -23.68 -0.15 -2.56 16 19 C 0.13 2.74 5.30 -62.79 -0.33 2.40 16 20 H 0.08 1.90 8.14 -51.93 -0.42 1.48 16 21 N -0.59 -14.79 2.98 -145.81 -0.43 -15.22 16 22 C -0.21 -5.76 10.59 -15.06 -0.16 -5.92 16 23 H 0.08 2.18 7.83 -52.48 -0.41 1.77 16 24 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 25 N -0.92 -26.18 10.47 55.49 0.58 -25.60 16 26 Si 0.92 22.14 29.55 -169.99 -5.02 17.12 16 27 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 28 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 29 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 30 H 0.06 0.57 8.10 -51.93 -0.42 0.15 16 31 H 0.06 0.56 8.11 -51.93 -0.42 0.13 16 32 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.16 0.78 8.06 -52.49 -0.42 0.36 16 34 H 0.14 0.63 8.06 -52.48 -0.42 0.20 16 35 H 0.14 1.01 6.51 -52.49 -0.34 0.67 16 36 H 0.39 4.71 6.15 -40.82 -0.25 4.46 16 37 H 0.05 0.84 7.34 -51.93 -0.38 0.45 16 38 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 39 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.05 0.72 7.82 -51.93 -0.41 0.31 16 41 H 0.05 0.78 6.55 -51.93 -0.34 0.44 16 42 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 43 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 348.13 15.07 5.25 5.25 Total: -1.00 -33.39 348.13 -8.58 -41.97 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -5.75 Total: 5.13 kcal Atomic # 6 Polarization: 6.50 SS G_CDS: -2.30 Total: 4.20 kcal Atomic # 7 Polarization: -58.14 SS G_CDS: -0.16 Total: -58.30 kcal Atomic # 8 Polarization: -14.77 SS G_CDS: -0.59 Total: -15.36 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.39 -8.58 -41.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095959536.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.926 kcal (2) G-P(sol) polarization free energy of solvation -33.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.967 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds